Parkinson’s Disease scRNA-seq: CD14++ Monocytes
Brian M. Schilder, Bioinformatician II
Raj Lab
Department of Neuroscience
Icahn School of Medicine at Mount Sinai
NYC, New York
2019-01-11
Setup
resultsPath=file.path(getwd(),"Results")
# Gather parameters from command line
#dir.create(file.path(resultsPath,"cache"), showWarnings=F, recursive=T)
nCores <- parallel::detectCores()#params$nCores
subsetGenes <- params$subsetGenes
subsetCells <- params$subsetCells
resolution <- as.numeric(params$resolution)
interactive <- params$interactive
root <- getwd()
# Have to setwd via knitr
# knitr::opts_knit$set(root.dir=resultsPath, child.path = resultsPath)
knitr::opts_chunk$set(echo=T, error=T, root.dir = resultsPath
# cache=T, cache.lazy=T
)
# Utilize parallel processing later on
print(paste("**** Utilized Cores **** =", nCores)) ## [1] "**** Utilized Cores **** = 4"params ## $subsetGenes
## [1] "protein_coding"
##
## $subsetCells
## [1] "400"
##
## $resolution
## [1] "0.6"
##
## $resultsPath
## [1] "/Users/schilder/Desktop/PD_scRNAseq/Results/subsetGenes-protein_coding__subsetCells-400__Resolution-0.6"
##
## $interactive
## [1] "F"** /Users/schilder/Desktop/PD_scRNAseq/Results/subsetGenes-protein_coding__subsetCells-400__Resolution-0.6 **
Load Libraries & Report Versions
library(Seurat)
library(dplyr)
library(gridExtra)
library(knitr)
library(plotly)
library(ggplot2)
library(reshape2)
library(shiny)
library(ggrepel)
library(DT)
#
# install.packages('devtools')
# devtools::install_github('talgalili/heatmaply')
## Install Bioconductor
# if (!requireNamespace("BiocManager"))
# install.packages("BiocManager")
# BiocManager::install(c("biomaRt"))
library(biomaRt)
# BiocManager::install(c("DESeq2"))
library(DESeq2)
# library(snow); #BiocManager::install("Rmpi") #NOTE: different lib name than install name (snow vs Rmpi)
createDT <- function(DF, caption="", scrollY=500){
data <- DT::datatable(DF, caption=caption,
extensions = list('Buttons','Scroller'),
options = list( dom = 'Bfrtip',
buttons = c('copy', 'csv', 'excel', 'pdf', 'print'),
scrollY = scrollY, scrollX=T, scrollCollapse = T, paging = F,
columnDefs = list(list(className = 'dt-center', targets = "_all"))
)
)
return(data)
}
# Useful Seurat functions
## Seurat::FindGeneTerms() # Enrichr API
## Seurat::MultiModal_CCA() # Integrates data from disparate datasets (CIA version too)
sessionInfo()## R version 3.5.1 (2018-07-02)
## Platform: x86_64-apple-darwin15.6.0 (64-bit)
## Running under: macOS 10.14.2
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## attached base packages:
## [1] parallel stats4 stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] DESeq2_1.22.2 SummarizedExperiment_1.12.0
## [3] DelayedArray_0.8.0 BiocParallel_1.16.5
## [5] matrixStats_0.54.0 Biobase_2.42.0
## [7] GenomicRanges_1.34.0 GenomeInfoDb_1.18.1
## [9] IRanges_2.16.0 S4Vectors_0.20.1
## [11] BiocGenerics_0.28.0 biomaRt_2.38.0
## [13] DT_0.5.1 ggrepel_0.8.0
## [15] shiny_1.2.0 reshape2_1.4.3
## [17] plotly_4.8.0 knitr_1.21
## [19] gridExtra_2.3 dplyr_0.7.8
## [21] Seurat_2.3.4 Matrix_1.2-15
## [23] cowplot_0.9.4 ggplot2_3.1.0
##
## loaded via a namespace (and not attached):
## [1] snow_0.4-3 backports_1.1.3 Hmisc_4.1-1
## [4] plyr_1.8.4 igraph_1.2.2 lazyeval_0.2.1
## [7] splines_3.5.1 digest_0.6.18 foreach_1.4.4
## [10] htmltools_0.3.6 lars_1.2 gdata_2.18.0
## [13] magrittr_1.5 checkmate_1.9.0 memoise_1.1.0
## [16] cluster_2.0.7-1 mixtools_1.1.0 ROCR_1.0-7
## [19] annotate_1.60.0 R.utils_2.7.0 prettyunits_1.0.2
## [22] colorspace_1.3-2 blob_1.1.1 xfun_0.4
## [25] crayon_1.3.4 RCurl_1.95-4.11 jsonlite_1.6
## [28] genefilter_1.64.0 bindr_0.1.1 survival_2.43-3
## [31] zoo_1.8-4 iterators_1.0.10 ape_5.2
## [34] glue_1.3.0 gtable_0.2.0 zlibbioc_1.28.0
## [37] XVector_0.22.0 kernlab_0.9-27 prabclus_2.2-6
## [40] DEoptimR_1.0-8 scales_1.0.0 mvtnorm_1.0-8
## [43] DBI_1.0.0 bibtex_0.4.2 Rcpp_1.0.0
## [46] metap_1.0 dtw_1.20-1 viridisLite_0.3.0
## [49] xtable_1.8-3 progress_1.2.0 htmlTable_1.13.1
## [52] reticulate_1.10 foreign_0.8-71 bit_1.1-14
## [55] proxy_0.4-22 mclust_5.4.2 SDMTools_1.1-221
## [58] Formula_1.2-3 tsne_0.1-3 htmlwidgets_1.3
## [61] httr_1.4.0 gplots_3.0.1 RColorBrewer_1.1-2
## [64] fpc_2.1-11.1 acepack_1.4.1 modeltools_0.2-22
## [67] ica_1.0-2 pkgconfig_2.0.2 XML_3.98-1.16
## [70] R.methodsS3_1.7.1 flexmix_2.3-14 nnet_7.3-12
## [73] locfit_1.5-9.1 tidyselect_0.2.5 rlang_0.3.1
## [76] later_0.7.5 AnnotationDbi_1.44.0 munsell_0.5.0
## [79] tools_3.5.1 RSQLite_2.1.1 ggridges_0.5.1
## [82] evaluate_0.12 stringr_1.3.1 yaml_2.2.0
## [85] npsurv_0.4-0 bit64_0.9-7 fitdistrplus_1.0-11
## [88] robustbase_0.93-3 caTools_1.17.1.1 purrr_0.2.5
## [91] RANN_2.6.1 bindrcpp_0.2.2 pbapply_1.3-4
## [94] nlme_3.1-137 mime_0.6 R.oo_1.22.0
## [97] hdf5r_1.0.1 compiler_3.5.1 rstudioapi_0.9.0
## [100] png_0.1-7 lsei_1.2-0 geneplotter_1.60.0
## [103] tibble_2.0.0 stringi_1.2.4 lattice_0.20-38
## [106] trimcluster_0.1-2.1 pillar_1.3.1 Rdpack_0.10-1
## [109] lmtest_0.9-36 data.table_1.11.8 bitops_1.0-6
## [112] irlba_2.3.2 gbRd_0.4-11 httpuv_1.4.5.1
## [115] R6_2.3.0 latticeExtra_0.6-28 promises_1.0.1
## [118] KernSmooth_2.23-15 codetools_0.2-16 MASS_7.3-51.1
## [121] gtools_3.8.1 assertthat_0.2.0 withr_2.1.2
## [124] GenomeInfoDbData_1.2.0 diptest_0.75-7 doSNOW_1.0.16
## [127] hms_0.4.2 grid_3.5.1 rpart_4.1-13
## [130] tidyr_0.8.2 class_7.3-15 rmarkdown_1.11
## [133] segmented_0.5-3.0 Rtsne_0.15 base64enc_0.1-3print(paste("Seurat ", packageVersion("Seurat")))## [1] "Seurat 2.3.4"Load Data
## ! IMPORTANT! Must not setwd to local path when launching on cluster
# setwd("~/Desktop/PD_scRNAseq/")
dir.create(file.path(root,"Data"), showWarnings=F)
load(file.path(root,"Data/seurat_object_add_HTO_ids.Rdata"))
pbmc <- seurat.obj
rm(seurat.obj)Pre-filtered Dimensions
pbmc## An object of class seurat in project RAJ_13357
## 24914 genes across 22113 samples.Clean Metadata
Add Metadata
metadata <- read.table(file.path(root,"Data/meta.data4.tsv"))
createDT( metadata, caption = "Metadata") ## Warning in instance$preRenderHook(instance): It seems your data is too
## big for client-side DataTables. You may consider server-side processing:
## https://rstudio.github.io/DT/server.html# Make AgeGroups
makeAgeGroups <- function(){
dim(metadata)
getMaxRound <- function(vals=metadata$Age, unit=10)unit*ceiling((max(vals)/unit))
getMinRound <- function(vals=metadata$Age, unit=10)unit*floor((min(vals)/unit))
ageBreaks = c(seq(getMinRound(), getMaxRound(), by = 10), getMaxRound()+10)
AgeGroupsUniq <- c()
for (i in 1:(length(ageBreaks)-1)){
AgeGroupsUniq <- append(AgeGroupsUniq, paste(ageBreaks[i],ageBreaks[i+1], sep="-"))
}
data.table::setDT(metadata,keep.rownames = T,check.names = F)[, AgeGroups := cut(Age,
breaks = ageBreaks,
right = F,
labels = AgeGroupsUniq,
nclude.lowest=T)]
metadata <- data.frame(metadata)
unique(metadata$AgeGroups)
head(metadata)
dim(metadata)
return(metadata)
}
# metadata <- makeAgeGroups()
pbmc <- AddMetaData(object = pbmc, metadata = metadata)
# Get rid of any NAs (cells that don't match up with the metadata)
if(subsetCells==F){
pbmc <- FilterCells(object = pbmc, subset.names = "nGene", low.thresholds = 0)
} else {pbmc <- FilterCells(object = pbmc, subset.names = "nGene", low.thresholds = 0,
# Subset for testing
cells.use = pbmc@cell.names[0:subsetCells]
)
} Filter & Normalize Data
Subset Genes by Biotype
Include only subsets of genes by type. Biotypes from: https://useast.ensembl.org/info/genome/genebuild/biotypes.html
subsetBiotypes <- function(pbmc, subsetGenes){
if( subsetGenes!=F ){
print(paste("Subsetting genes:",subsetGenes))
# If the gene_biotypes file exists, import csv. Otherwise, get from biomaRt
if(file_test("-f", file.path(root,"Data/gene_biotypes.csv"))){
biotypes <- read.csv(file.path(root,"Data/gene_biotypes.csv"))
}
else {
ensembl <- useMart(biomart="ENSEMBL_MART_ENSEMBL", host="grch37.ensembl.org",
dataset="hsapiens_gene_ensembl")
ensembl <- useDataset(mart = ensembl, dataset = "hsapiens_gene_ensembl")
listFilters(ensembl)
listAttributes(ensembl)
biotypes <- getBM(attributes=c("hgnc_symbol", "gene_biotype"), filters="hgnc_symbol",
values=row.names(pbmc@data), mart=ensembl)
write.csv(biotypes, file.path(root,"Data/gene_biotypes.csv"), quote=F, row.names=F)
}
# Subset data by creating new Seurat object (annoying but necessary)
geneSubset <- biotypes[biotypes$gene_biotype==subsetGenes,"hgnc_symbol"]
print(paste(dim(pbmc@raw.data[geneSubset, ])[1],"/", dim(pbmc@raw.data)[1],
"genes are", subsetGenes))
# Add back into pbmc
subset.matrix <- pbmc@raw.data[geneSubset, ] # Pull the raw expression matrix from the original Seurat object containing only the genes of interest
pbmc_sub <- CreateSeuratObject(subset.matrix) # Create a new Seurat object with just the genes of interest
orig.ident <- row.names(pbmc@meta.data) # Pull the identities from the original Seurat object as a data.frame
pbmc_sub <- AddMetaData(object = pbmc_sub, metadata = pbmc@meta.data) # Add the idents to the meta.data slot
pbmc_sub <- SetAllIdent(object = pbmc_sub, id = "ident") # Assign identities for the new Seurat object
pbmc <- pbmc_sub
rm(list = c("pbmc_sub","geneSubset", "subset.matrix", "orig.ident"))
}
}
subsetBiotypes(pbmc, subsetGenes)## [1] "Subsetting genes: protein_coding"
## [1] "14827 / 24914 genes are protein_coding"Subset Cells
Filter by cells, normalize , filter by gene variability.
pbmc <- FilterCells(object = pbmc, subset.names = c("nGene", "percent.mito"),
low.thresholds = c(200, -Inf), high.thresholds = c(2500, 0.05))
pbmc <- NormalizeData(object = pbmc, normalization.method = "LogNormalize",
scale.factor = 10000)Subset Genes by Variance
** Important!**: Specify do.par = T, and num.cores = nCores in ‘ScaleData’ to use all available cores.
# Store the top most variable genes in @var.genes
pbmc <- FindVariableGenes(object = pbmc, mean.function = ExpMean, dispersion.function = LogVMR,
x.low.cutoff = 0.0125, x.high.cutoff = 3, y.cutoff = 0.5)
# IMPORTANT!: Must set do.par=T and num.cors = n for large datasets being processed on computing clusters
# IMPORTANT!: Use only the var.genes identified by 'FindVariableGenes' as the 'gene.use' arg in 'ScaleData'
## This will greatly reduced the computational load.
# par.Cores <- ifelse(nCores <= 12, 48, nCores)
pbmc <- ScaleData(object = pbmc, genes.use = pbmc@var.genes, vars.to.regress = c("nUMI", "percent.mito"),
do.par = T, num.cores = nCores)## Regressing out: nUMI, percent.mito##
## Time Elapsed: 11.2049210071564 secs## Scaling data matrixFiltered Dimensions
pbmc## An object of class seurat in project RAJ_13357
## 24914 genes across 396 samples.Diagnostic Plots
Violin Plots
vp <- VlnPlot(object = pbmc, features.plot = c("nGene", "nUMI", "percent.mito"),nCol = 3, do.return = T) %>% + ggplot2::aes(alpha=0.5)
vp
Gene Plots
percent.mito plot
# par(mfrow = c(1, 2))
gp1 <- GenePlot(object = pbmc, gene1 = "nUMI", gene2 = "percent.mito", pch.use=20,
do.hover=T, data.hover = "mut")gp1nGene plot
gp2 <- GenePlot(object = pbmc, gene1 = "nUMI", gene2 = "nGene", pch.use=20,
do.hover=T, data.hover = "mut")gp2Dimensionality Reduction
PCA
ProjectPCA scores each gene in the dataset (including genes not included in the PCA) based on their correlation with the calculated components. Though we don’t use this further here, it can be used to identify markers that are strongly correlated with cellular heterogeneity, but may not have passed through variable gene selection. The results of the projected PCA can be explored by setting use.full=T in the functions above
- Other Dim Reduction Methods in Seurat
- RunCCA()
- RunMultiCCA()
- RunDiffusion()
- RunPHATE()
- RunUMAP()
- RunICA()
# Run PCA with only the top most variables genes
pbmc <- RunPCA(object = pbmc, pc.genes = pbmc@var.genes, do.print=F) #, pcs.print = 1:5, genes.print = 5
# Store in Seurat object so you don't have to recalculate it for the tSNE/UMAP steps
pbmc <- ProjectPCA(object = pbmc, do.print=F) VizPCA
VizPCA(object = pbmc, pcs.use = 1:2)
PCA plot
PCAPlot(object = pbmc, dim.1 = 1, dim.2 = 2, do.hover=T, data.hover="mut")PCHeatmaps
# 'PCHeatmap' is a wrapper for heatmap.2
PCHeatmap(object = pbmc, pc.use = 1:12, do.balanced=T, label.columns=F, use.full=F) 
Significant PCs
Determine statistically significant PCs for further analysis. NOTE: This process can take a long time for big datasets, comment out for expediency. More approximate techniques such as those implemented in PCElbowPlot() can be used to reduce computation time
#pbmc <- JackStraw(object = pbmc, num.replicate = 100, display.progress = FALSE)
PCElbowPlot(object = pbmc)
Find Cell Clusters
We first construct a KNN graph based on the euclidean distance in PCA space, and refine the edge weights between any two cells based on the shared overlap in their local neighborhoods (Jaccard similarity). To cluster the cells, we apply modularity optimization techniques such as the Louvain algorithm (default) or SLM [SLM, Blondel et al., Journal of Statistical Mechanics], to iteratively group cells together, with the goal of optimizing the standard modularity function.
On Resolution
The FindClusters function implements the procedure, and contains a resolution parameter that sets the ‘granularity’ of the downstream clustering, with increased values leading to a greater number of clusters. We find that setting this parameter between 0.6-1.2 typically returns good results for single cell datasets of around 3K cells. Optimal resolution often increases for larger datasets. The clusters are saved in the object@ident slot.
- To further increase speed, you can employ an approximate nearest neighbor search via the RANN package by increasing the nn.eps + parameter. Setting this at 0 (the default) represents an exact neighbor search.
- By default, we perform 100 random starts for clustering and select the result with highest modularity. You can lower this through the n.start parameter to reduce clustering time.
# TRY DIFFERENT RESOLUTIONS
pbmc <- StashIdent(object = pbmc, save.name = "pre_clustering")
# pbmc <- SetAllIdent(object = pbmc, id = "pre_clustering")
pbmc <- FindClusters(object = pbmc, reduction.type = "pca", dims.use = 1:10,
resolution = resolution, print.output = F, save.SNN = T,
n.start = 10, nn.eps = 0.5)
PrintFindClustersParams(object = pbmc) ## Parameters used in latest FindClusters calculation run on: 2019-01-11 01:03:20
## =============================================================================
## Resolution: 0.6
## -----------------------------------------------------------------------------
## Modularity Function Algorithm n.start n.iter
## 1 1 10 10
## -----------------------------------------------------------------------------
## Reduction used k.param prune.SNN
## pca 30 0.0667
## -----------------------------------------------------------------------------
## Dims used in calculation
## =============================================================================
## 1 2 3 4 5 6 7 8 9 10pbmc <- StashIdent(object = pbmc, save.name = "post_clustering") UMAP
pbmc <- RunUMAP(object = pbmc, dims.use = 1:10, num_threads=0)
# Plot results
DimPlot(object = pbmc, reduction.use = 'umap')
t-SNE
As input to the tSNE, we suggest using the same PCs as input to the clustering analysis, although computing the tSNE based on scaled gene expression is also supported using the genes.use argument.
** Important!**: Specify num_threads=0 in ‘RunTSNE’ to use all available cores.
“FItSNE”, a new fast implementation of t-SNE, is also available through RunTSNE. However FItSNE must first be setup on your computer.
labSize <- 6
pbmc <- RunTSNE(object=pbmc, reduction.use = "pca", dims.use = 1:10, do.fast = TRUE,
tsne.method = "Rtsne", num_threads=0) # FItSNE
# note that you can set do.label=T to help label individual clusters
tp <- TSNEPlot(object = pbmc, do.label=T, label.size = labSize, do.return=T)
ifelse(interactive, tp %>% ggplotly() %>% toWebGL() %>% print(), print(tp))
## [[1]]
## tSNE_1 tSNE_2 ident x
## GTCATTTTCCGCATCT -8.657445e+00 0.22898545 1 -8.657445e+00
## ATAAGAGAGGAGTTGC -5.176955e+00 2.76507088 1 -5.176955e+00
## CATTATCCATGGTCTA 1.155586e+00 2.26353705 0 1.155586e+00
## CTTAGGAGTGGCGAAT 1.219443e+00 -1.46785659 0 1.219443e+00
## CATCAGAAGCACCGCT 6.644504e-04 4.81762700 0 6.644504e-04
## GCGGGTTAGTAGCCGA 4.379003e+00 3.34423767 0 4.379003e+00
## CAGAGAGAGCGCCTTG 6.704459e+00 -0.07468406 0 6.704459e+00
## CTGAAGTCAGACACTT 1.482259e+00 2.11618901 0 1.482259e+00
## GGACGTCCAGGTGCCT -7.422198e+00 6.70733341 1 -7.422198e+00
## AAAGCAAGTGGTGTAG 4.675011e+00 0.42397557 0 4.675011e+00
## TCTCATACAGGGCATA -4.598105e+00 -3.24906447 0 -4.598105e+00
## AACTCAGGTACTCGCG 5.242496e+00 3.11792498 0 5.242496e+00
## CACATTTGTGAGTATA -2.980013e-01 3.84801123 0 -2.980013e-01
## ACTTTCAAGGTGTTAA -5.514153e+00 1.72482926 1 -5.514153e+00
## TGCCCATCAGACGCAA 6.670565e+00 7.60624163 0 6.670565e+00
## CTAAGACCAATGCCAT -4.931751e-01 -0.51975752 0 -4.931751e-01
## CGGAGCTCATTTGCTT -3.166285e+00 -5.11813943 0 -3.166285e+00
## GAGCAGATCGACGGAA 2.853900e-01 2.60195317 0 2.853900e-01
## TAAACCGAGATCGATA -1.165963e+00 -2.42873993 0 -1.165963e+00
## GTCTCGTGTACATCCA -4.332121e+00 -4.60524475 0 -4.332121e+00
## GTATCTTAGACCCACC -3.171266e+00 6.10661192 1 -3.171266e+00
## GAGCAGAAGAGCCTAG -1.889856e+00 6.77566688 1 -1.889856e+00
## GTGCAGCTCACATAGC 5.977330e-01 2.11794566 0 5.977330e-01
## CCTATTAGTAAACCTC -2.864881e+00 -5.19432271 0 -2.864881e+00
## AGAGTGGAGTTTAGGA 1.209681e+00 -9.17804309 0 1.209681e+00
## TACGGGCAGGTGATTA 5.874006e+00 6.72907579 0 5.874006e+00
## ACTATCTCAATCTACG 1.472580e+00 6.53659187 0 1.472580e+00
## CGAGCCATCAGGCAAG 2.426180e+00 -7.45576833 0 2.426180e+00
## CGAATGTCAATTGCTG 6.564554e+00 -1.58694914 0 6.564554e+00
## TACGGTATCGTTACGA 2.557060e-01 2.41872600 0 2.557060e-01
## CTGTGCTCAAGGTGTG 6.065800e+00 1.51692437 0 6.065800e+00
## CCATGTCGTAACGACG -4.861762e+00 -4.61285178 0 -4.861762e+00
## TGCTGCTAGACACTAA 1.719350e+00 -5.88253455 0 1.719350e+00
## ACGGGTCTCGCTTAGA 8.131599e+00 2.80709852 0 8.131599e+00
## ACGAGGAAGGCTAGCA 3.444834e+00 1.77472927 0 3.444834e+00
## GCACTCTGTCGGCACT 3.690039e+00 5.22575486 0 3.690039e+00
## ATCATGGGTTTAAGCC 3.911044e+00 -6.49426793 0 3.911044e+00
## GCATGTAGTAAAGGAG 4.738446e+00 5.69774790 0 4.738446e+00
## CAACTAGAGTGGGCTA 1.496028e+00 -1.39212210 0 1.496028e+00
## AACACGTCAATCAGAA -8.670766e+00 6.66057665 1 -8.670766e+00
## AAAGTAGGTGTCTGAT -9.300675e+00 6.61832477 1 -9.300675e+00
## CTCATTATCGCTGATA 7.747000e+00 6.32235222 0 7.747000e+00
## TACTCGCCAACGCACC 2.896174e+00 5.87014251 0 2.896174e+00
## GGACATTGTCCTGCTT -7.910233e+00 5.18829695 1 -7.910233e+00
## ACTGAACAGAGCTGGT -2.665102e-02 1.49894341 0 -2.665102e-02
## CTCGGGAAGTGCAAGC 8.650236e-01 -0.96140589 0 8.650236e-01
## AGCTCCTAGCATGGCA -5.652088e-01 -7.08463854 0 -5.652088e-01
## TATTACCGTCGACTGC 2.813359e+00 1.60991296 0 2.813359e+00
## GAACGGACATTTCACT 3.555423e+00 7.68055960 0 3.555423e+00
## CACAAACTCCCGGATG -3.685737e-01 -4.50206567 0 -3.685737e-01
## GCTCCTAAGGGAGTAA 4.114673e+00 3.32689089 0 4.114673e+00
## GACTAACCATCACGTA -8.977484e+00 5.97296458 1 -8.977484e+00
## TACTCGCTCTTAACCT 4.185830e+00 6.64479053 0 4.185830e+00
## AGGCCGTCAGGAACGT -2.204399e+00 0.51695877 0 -2.204399e+00
## CCACTACAGTGCTGCC 3.342191e+00 -0.93090772 0 3.342191e+00
## ATCCACCCAAGCCGTC 7.761106e+00 -5.95121223 0 7.761106e+00
## GAGTCCGAGACTGTAA 3.264741e+00 3.44709883 0 3.264741e+00
## AAGCCGCCAGAAGCAC 4.757493e+00 -3.16282887 0 4.757493e+00
## GACACGCCAGATTGCT 6.573146e+00 -1.63140169 0 6.573146e+00
## CGACTTCAGGCTACGA 5.276949e+00 -7.47923376 0 5.276949e+00
## GGGTTGCCAGTAAGCG 5.181468e+00 3.92768967 0 5.181468e+00
## AGTGAGGGTCAGAATA -2.199857e-01 4.14113976 0 -2.199857e-01
## GATCTAGCAGCCACCA 2.955631e+00 -9.82737782 0 2.955631e+00
## ACGAGGACAAGACGTG 3.794809e+00 -1.09445161 0 3.794809e+00
## CATATGGCAAGCCGCT 2.243866e-01 -3.12559374 0 2.243866e-01
## TTATGCTCAGACGCTC -1.458651e+00 -7.41360423 0 -1.458651e+00
## AGTGTCAAGTCGCCGT 4.594438e+00 -3.53316367 0 4.594438e+00
## AAGGCAGGTCTGCCAG 3.771036e+00 4.74299989 0 3.771036e+00
## TCAGGATAGCCCGAAA 8.801190e+00 3.29020655 0 8.801190e+00
## CCACTACCACTAGTAC 5.587682e+00 -9.23213655 1 5.587682e+00
## AGCAGCCTCGCCAAAT 2.172374e+00 8.36989228 0 2.172374e+00
## CTGCCTATCCATGCTC 2.711108e+00 -0.31664211 0 2.711108e+00
## GCTGCAGCATAGTAAG -2.423937e-01 3.78247853 0 -2.423937e-01
## GCGCAGTTCAGTTCGA -3.281175e+00 4.41627051 1 -3.281175e+00
## GGGCATCGTAGCGCTC 3.953198e+00 4.50317876 0 3.953198e+00
## CTAATGGGTTACGTCA 7.742022e+00 -2.58641670 0 7.742022e+00
## ATTCTACGTTATCGGT 9.639884e-01 -6.27692049 0 9.639884e-01
## GAAATGATCAGCTGGC 2.335541e+00 -5.50233211 0 2.335541e+00
## TGCTACCTCGTCCAGG 7.173994e-01 0.69917563 0 7.173994e-01
## ACATGGTCACTTACGA -2.593202e+00 7.61287539 0 -2.593202e+00
## ACTTTCAAGCGTTGCC 8.610835e+00 -3.49755962 0 8.610835e+00
## CCTACACGTAAACCTC 3.361248e+00 -1.81771097 0 3.361248e+00
## ATTGGTGAGATCCCAT 2.434441e+00 -0.19750949 0 2.434441e+00
## CCGGGATCACAGACAG -5.058401e+00 -3.06630110 0 -5.058401e+00
## CAGTAACTCTCTTGAT -1.567436e+00 -5.95114617 0 -1.567436e+00
## ATCTACTCAATAGCGG 9.544696e-01 -3.90651495 0 9.544696e-01
## ACCCACTGTTAAGAAC -7.424191e+00 4.82483508 1 -7.424191e+00
## ACATACGTCTGCTTGC -1.387212e+00 -6.16631089 0 -1.387212e+00
## CGTCTACGTTGAACTC 1.499977e+00 2.82186087 0 1.499977e+00
## ATTATCCCAGCAGTTT 6.597516e-01 4.52982408 0 6.597516e-01
## GAAACTCTCGTTACGA 7.170608e-01 -2.25962565 0 7.170608e-01
## GATGAAACATCATCCC 6.536961e+00 3.37784845 0 6.536961e+00
## CACAGTATCTGTCCGT 5.044328e+00 -1.05686075 0 5.044328e+00
## TGAAAGAAGGAGCGAG 8.378323e+00 0.15021670 0 8.378323e+00
## CCGGTAGAGACCGGAT 6.098751e+00 2.59708784 0 6.098751e+00
## TGCGGGTTCTAACCGA -8.542563e+00 4.19464935 1 -8.542563e+00
## GGCGACTTCGCGCCAA -8.112348e-01 -1.07821877 0 -8.112348e-01
## GGGATGAAGTCGCCGT 4.339055e+00 -6.41080183 0 4.339055e+00
## GATTCAGGTACAGACG 1.086021e-01 -0.79382160 0 1.086021e-01
## TAGACCACAAGAAGAG 6.469297e-01 -4.84616542 0 6.469297e-01
## AATCCAGGTCAGAGGT -6.299324e+00 2.04616857 1 -6.299324e+00
## TGAGCCGCAATGGACG -4.533750e+00 -2.82498997 0 -4.533750e+00
## CACATAGGTACTCTCC -1.630605e+00 -0.25945645 0 -1.630605e+00
## CATGGCGAGCAATATG -8.896476e+00 6.80217814 1 -8.896476e+00
## CAGTAACGTTATTCTC -3.248291e+00 5.73738875 1 -3.248291e+00
## GCGAGAAGTTCCGTCT 2.301985e+00 -8.72120370 0 2.301985e+00
## TTTACTGGTCCCTTGT -7.170291e+00 -2.26381632 1 -7.170291e+00
## ATCATGGCACGAAATA 3.911615e+00 -1.45908464 0 3.911615e+00
## CGCCAAGAGGCAGTCA -1.049559e+00 -5.65424376 0 -1.049559e+00
## CGTCCATGTCCAGTAT -9.065749e-01 -12.14631589 0 -9.065749e-01
## TGGCGCATCCATTCTA 1.082823e+00 -5.83746787 0 1.082823e+00
## CCCATACGTAGCTTGT -1.274327e+00 -4.23696194 0 -1.274327e+00
## GCATGCGGTGCTGTAT -1.105904e+00 -2.30929762 0 -1.105904e+00
## TTCTTAGCATGCTAGT 4.518414e+00 -10.98999135 0 4.518414e+00
## TGCGCAGAGTGGACGT -4.740021e+00 2.27632786 1 -4.740021e+00
## ATTATCCGTTGCTCCT 1.019460e+01 1.60068503 0 1.019460e+01
## AGAATAGAGACTAGGC 2.574607e-01 8.19470211 0 2.574607e-01
## CCTACACAGCTGCAAG -4.579187e+00 3.78036762 1 -4.579187e+00
## GACAGAGAGTGCTGCC 2.674800e+00 7.80813469 0 2.674800e+00
## GTTCGGGTCCCAAGAT 5.078476e+00 5.85749790 0 5.078476e+00
## AGTAGTCGTAAGCACG -4.204170e+00 -7.66123928 0 -4.204170e+00
## CTCACACGTACCTACA -3.218777e+00 -7.27508623 0 -3.218777e+00
## GCAGTTAAGTGGGTTG 1.666565e+00 -0.71374206 0 1.666565e+00
## GTCAAGTCAGCTCGAC -9.307978e-02 4.66083424 1 -9.307978e-02
## GCTGCGATCCCTAACC -7.367523e+00 -2.18373837 1 -7.367523e+00
## GATCGTATCCCTAACC -5.129086e-01 -10.37214175 0 -5.129086e-01
## TGAGAGGTCCGTAGTA -3.068281e+00 -3.50342754 0 -3.068281e+00
## CTCGTCAGTGCACTTA -1.869924e+00 -1.73791864 0 -1.869924e+00
## AGCATACAGCAAATCA 2.038829e+00 1.50302028 0 2.038829e+00
## TCGGGACGTGTCAATC 1.893738e+00 0.79349361 0 1.893738e+00
## ATGCGATGTAAACACA 8.023736e+00 -7.23045009 0 8.023736e+00
## CATGACACACAACGTT 5.681009e+00 2.02909006 0 5.681009e+00
## GCTTGAAGTGCTAGCC 3.164570e+00 -8.10136604 0 3.164570e+00
## TTTGGTTTCTCTTATG 6.542839e+00 -2.60279866 0 6.542839e+00
## ACACCCTGTGAAATCA 6.644580e+00 4.13445131 0 6.644580e+00
## ATCATGGTCCCTCAGT -5.518678e+00 -5.00020672 0 -5.518678e+00
## CCTCTGACAATCAGAA 4.913926e+00 -4.21936812 0 4.913926e+00
## ACATACGAGACACTAA 6.863066e-01 8.37578804 0 6.863066e-01
## TCACAAGTCCGTAGGC -7.494170e+00 1.55313421 1 -7.494170e+00
## GCAGTTAGTCCAGTGC -8.718299e+00 0.25433822 1 -8.718299e+00
## AGTGAGGGTTACAGAA 9.690106e+00 4.93468788 0 9.690106e+00
## CACACAAGTAATCACC 4.260916e-01 -9.85862531 0 4.260916e-01
## GATCGCGAGGCTAGAC -4.562177e+00 -4.19709412 0 -4.562177e+00
## CTCGTACTCCTTTCGG 1.916499e+00 -1.03062040 0 1.916499e+00
## ATCCACCTCGGCGGTT 5.593286e+00 9.23465138 0 5.593286e+00
## GAAGCAGAGCTAGTTC 8.548682e+00 -2.52295127 0 8.548682e+00
## CAGTCCTAGTGTCTCA 4.405758e+00 2.29180444 0 4.405758e+00
## CGCTTCACAATGGATA 2.354838e+00 -5.76518775 0 2.354838e+00
## TCCCGATTCATATCGG 4.848905e+00 -2.95373630 0 4.848905e+00
## TGTGGTACATATACCG 3.850445e+00 6.02642958 0 3.850445e+00
## TACCTTACACTACAGT -7.650567e+00 2.79350107 1 -7.650567e+00
## GTAGGCCGTCCGTCAG -5.136115e+00 -7.66884750 0 -5.136115e+00
## CAGAATCCAATCAGAA 1.161542e+00 5.89630599 0 1.161542e+00
## GGATTACTCTGTGCAA -7.848723e-01 8.08541832 1 -7.848723e-01
## GTCGTAAGTTTGTTTC -2.150638e+00 9.16075689 0 -2.150638e+00
## GATCGTAAGCCAGTAG 4.521357e+00 -4.09050881 0 4.521357e+00
## GACTACAGTTAAAGAC 9.046054e+00 -5.62714169 0 9.046054e+00
## CATGACACAACACCTA 9.638608e+00 -2.21053324 0 9.638608e+00
## CACCAGGTCACGCGGT -8.503426e-01 -12.63334048 0 -8.503426e-01
## GTCTTCGTCTGAGTGT -1.637446e+00 3.38244355 1 -1.637446e+00
## CCTTCGAAGTGGGATC -5.864636e-01 -5.18497688 0 -5.864636e-01
## GTGCGGTGTCCTGCTT -8.092565e-01 -10.46623537 0 -8.092565e-01
## GTCACAACATGCCTTC -8.945527e+00 0.21219912 1 -8.945527e+00
## CAGAGAGTCAGTCAGT 1.882167e+00 -8.03577464 0 1.882167e+00
## GTGCGGTGTACTCTCC -1.594496e+00 0.59424017 0 -1.594496e+00
## CAGCTAATCAAGATCC -3.467392e+00 2.54671915 1 -3.467392e+00
## CAAGATCGTTGGGACA 6.727197e+00 -7.81771923 0 6.727197e+00
## TTTATGCCATCACAAC 8.119497e+00 4.99454347 0 8.119497e+00
## CGGTTAATCCCAAGTA 4.719813e+00 0.59786472 0 4.719813e+00
## TAGCCGGTCCGTAGTA -1.057834e+01 4.01096450 1 -1.057834e+01
## ACGAGCCGTGTTTGTG 1.527536e+00 6.21024586 0 1.527536e+00
## AGCATACCAAACCCAT -2.128794e+00 10.23627590 0 -2.128794e+00
## GAAATGATCAACACTG 1.815332e+00 1.47737360 0 1.815332e+00
## TATCTCACATAACCTG 7.864979e+00 0.95320144 0 7.864979e+00
## CCGTACTCACTTCTGC -1.099125e+01 3.55343253 1 -1.099125e+01
## CTAGAGTTCAGAGGTG -2.306152e+00 -2.89765320 0 -2.306152e+00
## CTGATAGCATACAGCT 3.543732e+00 -5.15230097 0 3.543732e+00
## TCGAGGCCACGGTAGA -7.359257e+00 6.80325879 1 -7.359257e+00
## GATCAGTTCACTTATC -2.132532e+00 -4.12827976 0 -2.132532e+00
## GTTTCTAAGCCCTAAT -1.683131e+00 -9.40520559 0 -1.683131e+00
## CAGCTGGAGGAATTAC -6.002086e+00 0.86911471 1 -6.002086e+00
## AGAGTGGTCGATCCCT 8.532731e-01 -9.90547100 0 8.532731e-01
## CATGGCGCAACTGCTA 2.487109e-01 -3.40613878 0 2.487109e-01
## CTGGTCTGTATATGGA -8.675774e+00 4.52674174 1 -8.675774e+00
## CGTCACTCACAGGAGT 1.885011e+00 -2.60302610 0 1.885011e+00
## AACTGGTTCAACCAAC -9.370409e+00 5.35380332 1 -9.370409e+00
## CCATTCGCAGGGAGAG -8.842309e-01 0.52838436 0 -8.842309e-01
## CATCAGATCTTCAACT -4.073099e+00 -1.89936601 0 -4.073099e+00
## GAATGAATCAGGCAAG 1.415408e+00 -4.64746711 0 1.415408e+00
## TGTCCCATCGAATGCT -1.416379e+00 1.20136027 0 -1.416379e+00
## AGTGGGACAGCCAATT 1.334275e+00 -1.67811345 0 1.334275e+00
## AGAGCTTTCACATGCA 6.969329e+00 -4.36323009 0 6.969329e+00
## TGCGGGTTCTGCAGTA 7.199681e+00 -4.99074850 0 7.199681e+00
## GTCGTAAGTCGGCACT 5.213620e+00 -7.54120103 0 5.213620e+00
## CTCGAGGTCGGAGCAA -1.535957e+00 -0.55751139 0 -1.535957e+00
## CTACACCAGATGAGAG -8.532659e+00 -1.13772535 0 -8.532659e+00
## ACGGCCATCTTACCTA 4.122792e+00 -0.69767734 0 4.122792e+00
## CCCAGTTCACACCGAC 3.324179e+00 -10.88652323 1 3.324179e+00
## TCGGGACTCGGATGGA -5.395824e+00 1.82109018 1 -5.395824e+00
## CATCGGGTCCCGACTT -3.868171e+00 0.94192704 1 -3.868171e+00
## CTTAACTGTAAGGATT 6.268201e+00 6.53823839 0 6.268201e+00
## AACCATGAGCGTAATA 6.636750e+00 -0.11980178 0 6.636750e+00
## TCAGATGGTCTTCTCG 3.658707e-01 -7.47340137 0 3.658707e-01
## CTCACACTCCCAACGG -2.236868e+00 10.66971754 0 -2.236868e+00
## CCATGTCAGGATGGAA -8.761853e-01 -1.77491162 0 -8.761853e-01
## GGGTCTGGTACTTGAC 7.585292e+00 -2.08513676 0 7.585292e+00
## GGAACTTCACAGTCGC 2.743753e+00 -9.54205886 0 2.743753e+00
## GACCTGGCACATCCAA 5.736315e+00 4.49306281 0 5.736315e+00
## CAGTCCTCAAGACACG -8.236154e+00 7.68925514 1 -8.236154e+00
## AGATCTGCATATGGTC 3.379516e+00 -5.83544768 0 3.379516e+00
## CATCAGAGTATTCTCT 1.946420e+00 -3.52228141 0 1.946420e+00
## TGCACCTTCGATAGAA -1.028930e+00 -10.37898033 0 -1.028930e+00
## CCTACACTCCCAAGTA 5.781861e+00 -4.44594705 0 5.781861e+00
## ACTTTCATCGTAGATC -8.388015e+00 5.10639949 1 -8.388015e+00
## TTGCGTCCACCATGTA -2.117388e-01 6.96255417 0 -2.117388e-01
## AAATGCCAGGTGCTAG 5.683804e+00 9.63927708 0 5.683804e+00
## ATGCGATGTCCATCCT -4.718003e+00 4.08013484 1 -4.718003e+00
## CCAGCGAAGCCACTAT 6.664703e+00 -1.59871243 0 6.664703e+00
## TACTTGTAGTGTACTC 3.182150e+00 5.13650489 0 3.182150e+00
## AGGGATGTCTCGCTTG -2.855192e+00 3.06418591 1 -2.855192e+00
## TGTCCCAGTATTAGCC 5.163745e+00 -9.31851269 0 5.163745e+00
## TGCTACCTCGCACTCT -6.830137e+00 0.52454619 0 -6.830137e+00
## GTAACGTCAGTATAAG -1.061979e+01 3.21165533 1 -1.061979e+01
## GCGCAACGTTCGTTGA -7.511986e+00 3.38075416 1 -7.511986e+00
## GCGAGAACATGAGCGA -1.055116e+01 5.87375864 1 -1.055116e+01
## TGCCCTAGTGCACCAC -7.779413e+00 -0.42046420 1 -7.779413e+00
## CTAGAGTGTAAACACA -1.137294e+00 2.07444697 0 -1.137294e+00
## AGTAGTCCACCGGAAA 1.920283e+00 3.98464886 0 1.920283e+00
## CATATTCTCAGCGATT 4.459245e+00 0.35512934 0 4.459245e+00
## GAATGAAGTAACGACG 5.748431e+00 1.31015961 0 5.748431e+00
## GATCAGTAGTACTTGC 6.831021e+00 -3.75167056 0 6.831021e+00
## CAAGAAACAGGATTGG -4.725736e+00 3.83764871 1 -4.725736e+00
## CCTATTATCAACACTG -2.448638e+00 -5.68727759 0 -2.448638e+00
## CAGCAGCTCTGCGGCA -5.855051e+00 -2.67097026 0 -5.855051e+00
## ATAAGAGAGCTGCGAA 7.939433e+00 2.81866772 0 7.939433e+00
## AGATCTGCACCTATCC 7.902560e-01 -10.53155833 0 7.902560e-01
## GACACGCGTAGAGCTG -4.289512e+00 -6.28180753 0 -4.289512e+00
## TACACGAAGCTAGGCA -1.708622e+00 0.26584942 0 -1.708622e+00
## AACACGTTCCGAAGAG 1.372862e+00 -4.29921878 0 1.372862e+00
## TTAACTCGTGTAATGA -8.131753e+00 7.87178795 1 -8.131753e+00
## TGGCGCAGTTCAGACT 3.440412e+00 1.05951864 0 3.440412e+00
## CATCAGAGTCTAGTCA -1.794150e+00 5.54726428 1 -1.794150e+00
## CTAGAGTAGCATGGCA 5.615897e+00 6.74860631 0 5.615897e+00
## TACGGTAAGCGTGAAC 5.904719e+00 4.34339294 0 5.904719e+00
## TGACTTTTCGGATGTT -6.298207e+00 3.39041386 1 -6.298207e+00
## CTCACACTCCTACAGA -4.976099e+00 -8.66432922 0 -4.976099e+00
## CCGTACTCACTGAAGG 5.639067e+00 -5.92724179 0 5.639067e+00
## ATAACGCGTGGAAAGA -1.204078e+00 -4.89083534 0 -1.204078e+00
## GCTTGAAAGCTAGGCA -5.859117e+00 6.75708117 1 -5.859117e+00
## AAGTCTGGTGTTGGGA 5.248984e+00 -6.11249735 0 5.248984e+00
## CGATCGGGTACAGCAG 1.280231e+00 3.20085234 0 1.280231e+00
## AGTAGTCTCGATGAGG 3.546329e+00 2.51762719 0 3.546329e+00
## CGACCTTCAGACGCTC -7.387409e+00 4.50772268 1 -7.387409e+00
## GCATACACATGCAACT 4.223245e+00 1.53875690 0 4.223245e+00
## TCCCGATTCGCAGGCT 4.113075e+00 8.66711686 0 4.113075e+00
## TTAGGCAAGATCGATA -7.279612e+00 5.77674193 1 -7.279612e+00
## TCGTACCAGGCAAAGA 2.142047e+00 -7.62956725 0 2.142047e+00
## GGATGTTGTATAGGGC 4.427690e+00 4.41660737 0 4.427690e+00
## AATCCAGCAGAGTGTG 3.610174e+00 -4.31960620 0 3.610174e+00
## CATGCCTCACGGCCAT -4.504154e+00 4.85747142 1 -4.504154e+00
## CTCGAAACACATGACT 4.477078e+00 -0.07689102 0 4.477078e+00
## CTGCCTAGTTGCGTTA -3.511288e-01 -4.57535706 0 -3.511288e-01
## GGCGACTAGACAGAGA -8.618505e+00 0.16510837 1 -8.618505e+00
## TACAGTGGTGTAATGA -5.612653e+00 5.76301057 1 -5.612653e+00
## ACGAGCCTCTTATCTG 9.873352e+00 5.07518514 0 9.873352e+00
## GGGAATGCAAATACAG -9.394105e+00 6.71830037 1 -9.394105e+00
## TGCACCTGTACCGAGA 5.148232e+00 -6.22147826 0 5.148232e+00
## ATCATCTTCAGTCAGT 1.057280e+01 -0.16951143 0 1.057280e+01
## CATATTCGTACAGTTC -8.839006e-01 -1.90872262 0 -8.839006e-01
## GCATGATGTTCCACTC -2.044203e+00 -0.14753598 0 -2.044203e+00
## AAGGCAGTCACGACTA -4.332109e+00 0.26554382 0 -4.332109e+00
## GAAACTCTCTATCCCG -2.170408e+00 -1.44928431 0 -2.170408e+00
## AGCATACTCTGCTGTC -4.235250e+00 3.18573562 1 -4.235250e+00
## TGGGCGTCAGCGTTCG -4.861304e+00 1.23644683 1 -4.861304e+00
## TCGTAGAGTTCGTCTC -5.829069e+00 -4.81356261 0 -5.829069e+00
## GACAGAGGTACCGCTG -1.004446e+01 4.00260346 1 -1.004446e+01
## TCTCATACACATAACC -1.552873e+00 -6.72790597 0 -1.552873e+00
## TGGGCGTCATTGAGCT 1.491094e+00 -9.73154313 0 1.491094e+00
## CATGACACATGTCTCC 7.862207e-01 -6.98352499 0 7.862207e-01
## GAATAAGGTGCACGAA -4.015221e+00 7.96834932 1 -4.015221e+00
## TGCGCAGCAAGCGAGT -4.738201e-01 -2.23807869 0 -4.738201e-01
## CTTCTCTCAGCCAGAA 6.522834e-01 -0.28475056 0 6.522834e-01
## AAGCCGCAGTGGCACA 5.381163e-01 -1.19173322 0 5.381163e-01
## CTCTACGAGTGGACGT 5.418260e+00 -9.95085912 0 5.418260e+00
## GTCATTTTCTATCCCG 6.020399e+00 7.31827049 0 6.020399e+00
## CGAGCACAGCCACTAT -9.532625e+00 -0.37672640 1 -9.532625e+00
## AGTAGTCGTAACGACG -4.960707e+00 -4.80736220 0 -4.960707e+00
## GACGTGCAGAGGGATA -8.659590e-01 3.00008337 0 -8.659590e-01
## GTCTTCGTCCAACCAA 8.078407e+00 4.35234047 0 8.078407e+00
## CAAGGCCTCGCCCTTA -1.650036e+00 -4.10777888 0 -1.650036e+00
## TGTGGTACATGGTTGT 4.333766e+00 5.97931693 0 4.333766e+00
## CCTCAGTTCGAATGCT -6.298901e+00 3.10075920 1 -6.298901e+00
## ACCGTAATCTGAGGGA -4.851655e+00 4.67346558 1 -4.851655e+00
## GTTAAGCCAGTTCATG 3.330227e+00 -5.74955731 0 3.330227e+00
## CTGCCTATCAATCTCT -1.781482e+00 1.58814641 0 -1.781482e+00
## GACGGCTTCTCCAACC 1.974222e+00 -0.61419188 0 1.974222e+00
## TTTCCTCCAGTTCCCT -8.956004e-01 -12.34614791 0 -8.956004e-01
## GCGCCAAAGCCCTAAT -9.713814e-01 -1.29271016 0 -9.713814e-01
## CCACCTATCCCGACTT -2.462155e+00 4.05638367 1 -2.462155e+00
## TTTATGCCAGGGCATA 4.095397e+00 -10.93641161 1 4.095397e+00
## TACAGTGTCGCGGATC -4.287943e+00 1.27509811 1 -4.287943e+00
## AGCTCTCCACCACGTG 1.028960e+00 -3.34557017 0 1.028960e+00
## GTGGGTCCATTGAGCT 7.492028e-03 10.47053957 1 7.492028e-03
## GGGATGACAGACTCGC 8.605070e+00 -3.65092807 0 8.605070e+00
## ACACCAAGTTCGGGCT -7.993369e+00 5.14879219 1 -7.993369e+00
## TGATTTCAGCTATGCT -9.880691e+00 1.23120054 1 -9.880691e+00
## TGGCCAGAGAGGGCTT 5.145418e+00 4.47840018 0 5.145418e+00
## TCGGTAAGTAAAGTCA 3.494028e+00 7.48264607 0 3.494028e+00
## TGAAAGAGTCCCTTGT -5.314825e+00 5.75532917 1 -5.314825e+00
## CCGTGGATCGTTTATC -5.444200e+00 0.42559319 1 -5.444200e+00
## GAACCTATCCTCAACC -4.169842e+00 -5.69093177 0 -4.169842e+00
## GCGCAGTCATCCAACA -8.963229e+00 3.37677607 1 -8.963229e+00
## ACATGGTTCGCGCCAA -2.653004e+00 3.75391014 1 -2.653004e+00
## CTTGGCTGTACGCACC -1.284867e+00 -8.30851167 0 -1.284867e+00
## AGATTGCAGGCCCGTT -4.800783e+00 -8.83620605 0 -4.800783e+00
## AGGCCGTGTTACGGAG -8.124113e+00 5.75832235 1 -8.124113e+00
## GGTGTTAGTTAAGATG 2.140839e+00 -2.00817489 0 2.140839e+00
## GGAATAATCCTGTAGA -5.574210e+00 4.13971276 1 -5.574210e+00
## TATTACCGTATTAGCC -9.308046e+00 1.17733605 1 -9.308046e+00
## ATAACGCGTTAGTGGG -3.988616e+00 -3.50692765 0 -3.988616e+00
## AAACGGGGTTATCCGA -3.579510e+00 1.64545336 0 -3.579510e+00
## TGTGGTATCGTTTAGG -6.913373e+00 3.87820458 1 -6.913373e+00
## ATCACGAGTATGAATG -2.439721e+00 3.41487553 1 -2.439721e+00
## CAGCAGCTCACCTCGT -6.141276e-01 -10.44154398 0 -6.141276e-01
## CCAATCCGTATTACCG -5.904125e+00 5.00515791 1 -5.904125e+00
## TTCTACATCACATAGC 6.112852e+00 6.55028648 0 6.112852e+00
## TGTCCCATCGTATCAG 8.800517e+00 -3.51706822 0 8.800517e+00
## AGCTCTCAGTGTTTGC -1.325945e+00 -3.44325153 0 -1.325945e+00
## CAACCTCAGTAACCCT 7.877974e+00 6.43545138 0 7.877974e+00
## GTGGGTCAGGTAAACT -3.630388e+00 -0.64842123 0 -3.630388e+00
## TAAGTGCCACGTCAGC -5.644045e+00 7.28087341 1 -5.644045e+00
## GACCTGGCAGCCACCA 4.301284e+00 -8.71281307 0 4.301284e+00
## ACAGCCGCAGGATCGA 1.029330e+00 -6.90833618 0 1.029330e+00
## AACTCCCCAGCTCGCA 4.247216e+00 -3.48441558 0 4.247216e+00
## GGAAAGCGTCTCTCGT 3.510818e+00 0.23251375 0 3.510818e+00
## CGCTTCAAGCAGGTCA -4.914605e+00 1.46609183 1 -4.914605e+00
## GATCGCGAGAAGGGTA -6.413629e+00 4.14813503 1 -6.413629e+00
## AAGCCGCCAGGATTGG -1.051683e+01 2.88993836 1 -1.051683e+01
## ATTGGACGTCGTGGCT 3.329373e+00 4.28667964 0 3.329373e+00
## CCCATACCACTAAGTC 7.907591e+00 7.07868143 0 7.907591e+00
## TCTCTAATCCCATTTA -1.048328e+01 5.66378840 1 -1.048328e+01
## TCGTAGAGTGGTACAG -5.836787e+00 -2.69605685 1 -5.836787e+00
## AAACGGGAGAGACGAA 9.998998e-01 -2.25437695 0 9.998998e-01
## GACTACATCACCACCT 5.440028e+00 9.01486282 0 5.440028e+00
## GAAACTCAGTTGAGTA -1.566576e+00 -4.50723060 0 -1.566576e+00
## CCCTCCTTCCTCCTAG -9.636273e+00 1.29110803 1 -9.636273e+00
## GCGACCATCACGGTTA 1.531680e-02 5.39959967 0 1.531680e-02
## TCTCTAAAGAGTCGGT -5.121621e+00 3.61876677 1 -5.121621e+00
## GGCTCGATCTCACATT 6.662753e+00 -0.06355014 0 6.662753e+00
## CTGATAGAGGCAGGTT -3.275426e+00 6.18298026 1 -3.275426e+00
## CATGCCTAGGAGTTTA -7.325889e+00 2.49315506 1 -7.325889e+00
## TGGCTGGTCAGCCTAA 4.277762e+00 -4.58668200 0 4.277762e+00
## TCAGATGTCGTTACAG 6.788437e+00 -7.74072556 0 6.788437e+00
## CAGCTGGGTTATGTGC -1.377998e+00 -2.77598063 0 -1.377998e+00
## GGAACTTAGTCGTACT 1.345522e+00 -7.65630497 0 1.345522e+00
## CCGGGATCACCGGAAA -6.241643e+00 4.79185561 1 -6.241643e+00
## CCTTCGATCAAAGACA 6.271899e-01 -5.16949311 0 6.271899e-01
## CGAGAAGGTATCGCAT -2.545856e+00 1.23219604 1 -2.545856e+00
## CCTAAAGAGACTGGGT 1.613359e+00 -8.39922297 0 1.613359e+00
## CAGATCACATTGGCGC -6.193854e+00 4.88584554 1 -6.193854e+00
## CTAGCCTAGCTGGAAC -1.673475e+00 5.83014130 1 -1.673475e+00
## ATTGGTGTCTCGTATT 7.618206e+00 6.26252206 0 7.618206e+00
## GGGAATGTCAAAGTAG -5.763744e+00 2.12691943 1 -5.763744e+00
## CCATGTCCACGGCCAT -5.515122e+00 -6.39443455 0 -5.515122e+00
## GGCAATTCATATGGTC 1.203202e+00 -4.46128743 0 1.203202e+00
## CTGTGCTCATGTCCTC -3.119671e+00 2.10428535 0 -3.119671e+00
## TTAACTCCAACGCACC -2.089245e+00 1.95839630 0 -2.089245e+00
## CGAACATAGCGGCTTC 2.669011e+00 -5.94601457 0 2.669011e+00
## TCGCGTTAGGCACATG -6.214042e+00 4.00673550 1 -6.214042e+00
## GGGTTGCCAAACTGCT -2.283807e+00 4.09198288 0 -2.283807e+00
## ATAAGAGCAGGTGCCT -5.758653e+00 0.55407994 1 -5.758653e+00
## CGGACACGTATTCGTG 7.420237e+00 4.91444266 0 7.420237e+00
## CTGATAGTCACGACTA -1.590383e+00 -8.04744340 0 -1.590383e+00
## GAACATCGTGAGTATA 5.053656e+00 2.55620440 0 5.053656e+00
## TGCTACCAGTGGTCCC 3.986098e+00 1.52336714 0 3.986098e+00
## GCTGGGTAGTCTTGCA -2.628358e+00 -6.99109831 0 -2.628358e+00
## TACGGATGTCTAACGT 2.227207e+00 3.20282438 0 2.227207e+00
## TGGGCGTCAATGGATA -7.339674e+00 1.21547427 1 -7.339674e+00
## CTGCTGTCATTTGCTT 6.421546e+00 1.81413427 0 6.421546e+00
## GGGCATCAGCAGCCTC -8.370552e+00 4.42006712 1 -8.370552e+00
## CGTGAGCAGACTAGAT 1.732701e+00 -8.24611111 0 1.732701e+00
## CAGCGACCACACCGAC 5.095460e+00 6.69669295 0 5.095460e+00
## CCCAATCCAGTTAACC 6.760060e+00 6.46831432 0 6.760060e+00
## CAGCGACTCAGCGACC 1.377572e+00 0.74564999 0 1.377572e+00
## GAGCAGAAGCTATGCT 5.996503e+00 5.40775242 0 5.996503e+00
## CTCTGGTTCACTTCAT -6.633507e-01 0.97420778 0 -6.633507e-01
## CGCGTTTCAGCTGTGC -7.789296e+00 2.72469496 1 -7.789296e+00
## GGACGTCCACCTCGGA 6.804610e+00 -3.36186641 0 6.804610e+00
## TAGTTGGAGAGTTGGC 3.246687e+00 -1.20152036 0 3.246687e+00
## ATTGGTGTCGGAATCT -3.666721e+00 0.53841459 0 -3.666721e+00
## GAATGAACACGGCCAT 7.946070e+00 4.70701237 0 7.946070e+00
## GTGCATACAAGGTGTG 2.006366e+00 -3.57461214 0 2.006366e+00
## GGAATAAGTCGGCACT 2.471427e+00 -4.38734743 0 2.471427e+00
## ACCCACTTCCAAAGTC 8.661584e+00 -4.50665306 0 8.661584e+00
## ACTATCTCAATTCCTT -4.769779e+00 7.01717630 1 -4.769779e+00
## AGCATACAGTGGGATC -4.206730e+00 2.49401762 0 -4.206730e+00
## y pt.size
## GTCATTTTCCGCATCT 0.22898545 1
## ATAAGAGAGGAGTTGC 2.76507088 1
## CATTATCCATGGTCTA 2.26353705 1
## CTTAGGAGTGGCGAAT -1.46785659 1
## CATCAGAAGCACCGCT 4.81762700 1
## GCGGGTTAGTAGCCGA 3.34423767 1
## CAGAGAGAGCGCCTTG -0.07468406 1
## CTGAAGTCAGACACTT 2.11618901 1
## GGACGTCCAGGTGCCT 6.70733341 1
## AAAGCAAGTGGTGTAG 0.42397557 1
## TCTCATACAGGGCATA -3.24906447 1
## AACTCAGGTACTCGCG 3.11792498 1
## CACATTTGTGAGTATA 3.84801123 1
## ACTTTCAAGGTGTTAA 1.72482926 1
## TGCCCATCAGACGCAA 7.60624163 1
## CTAAGACCAATGCCAT -0.51975752 1
## CGGAGCTCATTTGCTT -5.11813943 1
## GAGCAGATCGACGGAA 2.60195317 1
## TAAACCGAGATCGATA -2.42873993 1
## GTCTCGTGTACATCCA -4.60524475 1
## GTATCTTAGACCCACC 6.10661192 1
## GAGCAGAAGAGCCTAG 6.77566688 1
## GTGCAGCTCACATAGC 2.11794566 1
## CCTATTAGTAAACCTC -5.19432271 1
## AGAGTGGAGTTTAGGA -9.17804309 1
## TACGGGCAGGTGATTA 6.72907579 1
## ACTATCTCAATCTACG 6.53659187 1
## CGAGCCATCAGGCAAG -7.45576833 1
## CGAATGTCAATTGCTG -1.58694914 1
## TACGGTATCGTTACGA 2.41872600 1
## CTGTGCTCAAGGTGTG 1.51692437 1
## CCATGTCGTAACGACG -4.61285178 1
## TGCTGCTAGACACTAA -5.88253455 1
## ACGGGTCTCGCTTAGA 2.80709852 1
## ACGAGGAAGGCTAGCA 1.77472927 1
## GCACTCTGTCGGCACT 5.22575486 1
## ATCATGGGTTTAAGCC -6.49426793 1
## GCATGTAGTAAAGGAG 5.69774790 1
## CAACTAGAGTGGGCTA -1.39212210 1
## AACACGTCAATCAGAA 6.66057665 1
## AAAGTAGGTGTCTGAT 6.61832477 1
## CTCATTATCGCTGATA 6.32235222 1
## TACTCGCCAACGCACC 5.87014251 1
## GGACATTGTCCTGCTT 5.18829695 1
## ACTGAACAGAGCTGGT 1.49894341 1
## CTCGGGAAGTGCAAGC -0.96140589 1
## AGCTCCTAGCATGGCA -7.08463854 1
## TATTACCGTCGACTGC 1.60991296 1
## GAACGGACATTTCACT 7.68055960 1
## CACAAACTCCCGGATG -4.50206567 1
## GCTCCTAAGGGAGTAA 3.32689089 1
## GACTAACCATCACGTA 5.97296458 1
## TACTCGCTCTTAACCT 6.64479053 1
## AGGCCGTCAGGAACGT 0.51695877 1
## CCACTACAGTGCTGCC -0.93090772 1
## ATCCACCCAAGCCGTC -5.95121223 1
## GAGTCCGAGACTGTAA 3.44709883 1
## AAGCCGCCAGAAGCAC -3.16282887 1
## GACACGCCAGATTGCT -1.63140169 1
## CGACTTCAGGCTACGA -7.47923376 1
## GGGTTGCCAGTAAGCG 3.92768967 1
## AGTGAGGGTCAGAATA 4.14113976 1
## GATCTAGCAGCCACCA -9.82737782 1
## ACGAGGACAAGACGTG -1.09445161 1
## CATATGGCAAGCCGCT -3.12559374 1
## TTATGCTCAGACGCTC -7.41360423 1
## AGTGTCAAGTCGCCGT -3.53316367 1
## AAGGCAGGTCTGCCAG 4.74299989 1
## TCAGGATAGCCCGAAA 3.29020655 1
## CCACTACCACTAGTAC -9.23213655 1
## AGCAGCCTCGCCAAAT 8.36989228 1
## CTGCCTATCCATGCTC -0.31664211 1
## GCTGCAGCATAGTAAG 3.78247853 1
## GCGCAGTTCAGTTCGA 4.41627051 1
## GGGCATCGTAGCGCTC 4.50317876 1
## CTAATGGGTTACGTCA -2.58641670 1
## ATTCTACGTTATCGGT -6.27692049 1
## GAAATGATCAGCTGGC -5.50233211 1
## TGCTACCTCGTCCAGG 0.69917563 1
## ACATGGTCACTTACGA 7.61287539 1
## ACTTTCAAGCGTTGCC -3.49755962 1
## CCTACACGTAAACCTC -1.81771097 1
## ATTGGTGAGATCCCAT -0.19750949 1
## CCGGGATCACAGACAG -3.06630110 1
## CAGTAACTCTCTTGAT -5.95114617 1
## ATCTACTCAATAGCGG -3.90651495 1
## ACCCACTGTTAAGAAC 4.82483508 1
## ACATACGTCTGCTTGC -6.16631089 1
## CGTCTACGTTGAACTC 2.82186087 1
## ATTATCCCAGCAGTTT 4.52982408 1
## GAAACTCTCGTTACGA -2.25962565 1
## GATGAAACATCATCCC 3.37784845 1
## CACAGTATCTGTCCGT -1.05686075 1
## TGAAAGAAGGAGCGAG 0.15021670 1
## CCGGTAGAGACCGGAT 2.59708784 1
## TGCGGGTTCTAACCGA 4.19464935 1
## GGCGACTTCGCGCCAA -1.07821877 1
## GGGATGAAGTCGCCGT -6.41080183 1
## GATTCAGGTACAGACG -0.79382160 1
## TAGACCACAAGAAGAG -4.84616542 1
## AATCCAGGTCAGAGGT 2.04616857 1
## TGAGCCGCAATGGACG -2.82498997 1
## CACATAGGTACTCTCC -0.25945645 1
## CATGGCGAGCAATATG 6.80217814 1
## CAGTAACGTTATTCTC 5.73738875 1
## GCGAGAAGTTCCGTCT -8.72120370 1
## TTTACTGGTCCCTTGT -2.26381632 1
## ATCATGGCACGAAATA -1.45908464 1
## CGCCAAGAGGCAGTCA -5.65424376 1
## CGTCCATGTCCAGTAT -12.14631589 1
## TGGCGCATCCATTCTA -5.83746787 1
## CCCATACGTAGCTTGT -4.23696194 1
## GCATGCGGTGCTGTAT -2.30929762 1
## TTCTTAGCATGCTAGT -10.98999135 1
## TGCGCAGAGTGGACGT 2.27632786 1
## ATTATCCGTTGCTCCT 1.60068503 1
## AGAATAGAGACTAGGC 8.19470211 1
## CCTACACAGCTGCAAG 3.78036762 1
## GACAGAGAGTGCTGCC 7.80813469 1
## GTTCGGGTCCCAAGAT 5.85749790 1
## AGTAGTCGTAAGCACG -7.66123928 1
## CTCACACGTACCTACA -7.27508623 1
## GCAGTTAAGTGGGTTG -0.71374206 1
## GTCAAGTCAGCTCGAC 4.66083424 1
## GCTGCGATCCCTAACC -2.18373837 1
## GATCGTATCCCTAACC -10.37214175 1
## TGAGAGGTCCGTAGTA -3.50342754 1
## CTCGTCAGTGCACTTA -1.73791864 1
## AGCATACAGCAAATCA 1.50302028 1
## TCGGGACGTGTCAATC 0.79349361 1
## ATGCGATGTAAACACA -7.23045009 1
## CATGACACACAACGTT 2.02909006 1
## GCTTGAAGTGCTAGCC -8.10136604 1
## TTTGGTTTCTCTTATG -2.60279866 1
## ACACCCTGTGAAATCA 4.13445131 1
## ATCATGGTCCCTCAGT -5.00020672 1
## CCTCTGACAATCAGAA -4.21936812 1
## ACATACGAGACACTAA 8.37578804 1
## TCACAAGTCCGTAGGC 1.55313421 1
## GCAGTTAGTCCAGTGC 0.25433822 1
## AGTGAGGGTTACAGAA 4.93468788 1
## CACACAAGTAATCACC -9.85862531 1
## GATCGCGAGGCTAGAC -4.19709412 1
## CTCGTACTCCTTTCGG -1.03062040 1
## ATCCACCTCGGCGGTT 9.23465138 1
## GAAGCAGAGCTAGTTC -2.52295127 1
## CAGTCCTAGTGTCTCA 2.29180444 1
## CGCTTCACAATGGATA -5.76518775 1
## TCCCGATTCATATCGG -2.95373630 1
## TGTGGTACATATACCG 6.02642958 1
## TACCTTACACTACAGT 2.79350107 1
## GTAGGCCGTCCGTCAG -7.66884750 1
## CAGAATCCAATCAGAA 5.89630599 1
## GGATTACTCTGTGCAA 8.08541832 1
## GTCGTAAGTTTGTTTC 9.16075689 1
## GATCGTAAGCCAGTAG -4.09050881 1
## GACTACAGTTAAAGAC -5.62714169 1
## CATGACACAACACCTA -2.21053324 1
## CACCAGGTCACGCGGT -12.63334048 1
## GTCTTCGTCTGAGTGT 3.38244355 1
## CCTTCGAAGTGGGATC -5.18497688 1
## GTGCGGTGTCCTGCTT -10.46623537 1
## GTCACAACATGCCTTC 0.21219912 1
## CAGAGAGTCAGTCAGT -8.03577464 1
## GTGCGGTGTACTCTCC 0.59424017 1
## CAGCTAATCAAGATCC 2.54671915 1
## CAAGATCGTTGGGACA -7.81771923 1
## TTTATGCCATCACAAC 4.99454347 1
## CGGTTAATCCCAAGTA 0.59786472 1
## TAGCCGGTCCGTAGTA 4.01096450 1
## ACGAGCCGTGTTTGTG 6.21024586 1
## AGCATACCAAACCCAT 10.23627590 1
## GAAATGATCAACACTG 1.47737360 1
## TATCTCACATAACCTG 0.95320144 1
## CCGTACTCACTTCTGC 3.55343253 1
## CTAGAGTTCAGAGGTG -2.89765320 1
## CTGATAGCATACAGCT -5.15230097 1
## TCGAGGCCACGGTAGA 6.80325879 1
## GATCAGTTCACTTATC -4.12827976 1
## GTTTCTAAGCCCTAAT -9.40520559 1
## CAGCTGGAGGAATTAC 0.86911471 1
## AGAGTGGTCGATCCCT -9.90547100 1
## CATGGCGCAACTGCTA -3.40613878 1
## CTGGTCTGTATATGGA 4.52674174 1
## CGTCACTCACAGGAGT -2.60302610 1
## AACTGGTTCAACCAAC 5.35380332 1
## CCATTCGCAGGGAGAG 0.52838436 1
## CATCAGATCTTCAACT -1.89936601 1
## GAATGAATCAGGCAAG -4.64746711 1
## TGTCCCATCGAATGCT 1.20136027 1
## AGTGGGACAGCCAATT -1.67811345 1
## AGAGCTTTCACATGCA -4.36323009 1
## TGCGGGTTCTGCAGTA -4.99074850 1
## GTCGTAAGTCGGCACT -7.54120103 1
## CTCGAGGTCGGAGCAA -0.55751139 1
## CTACACCAGATGAGAG -1.13772535 1
## ACGGCCATCTTACCTA -0.69767734 1
## CCCAGTTCACACCGAC -10.88652323 1
## TCGGGACTCGGATGGA 1.82109018 1
## CATCGGGTCCCGACTT 0.94192704 1
## CTTAACTGTAAGGATT 6.53823839 1
## AACCATGAGCGTAATA -0.11980178 1
## TCAGATGGTCTTCTCG -7.47340137 1
## CTCACACTCCCAACGG 10.66971754 1
## CCATGTCAGGATGGAA -1.77491162 1
## GGGTCTGGTACTTGAC -2.08513676 1
## GGAACTTCACAGTCGC -9.54205886 1
## GACCTGGCACATCCAA 4.49306281 1
## CAGTCCTCAAGACACG 7.68925514 1
## AGATCTGCATATGGTC -5.83544768 1
## CATCAGAGTATTCTCT -3.52228141 1
## TGCACCTTCGATAGAA -10.37898033 1
## CCTACACTCCCAAGTA -4.44594705 1
## ACTTTCATCGTAGATC 5.10639949 1
## TTGCGTCCACCATGTA 6.96255417 1
## AAATGCCAGGTGCTAG 9.63927708 1
## ATGCGATGTCCATCCT 4.08013484 1
## CCAGCGAAGCCACTAT -1.59871243 1
## TACTTGTAGTGTACTC 5.13650489 1
## AGGGATGTCTCGCTTG 3.06418591 1
## TGTCCCAGTATTAGCC -9.31851269 1
## TGCTACCTCGCACTCT 0.52454619 1
## GTAACGTCAGTATAAG 3.21165533 1
## GCGCAACGTTCGTTGA 3.38075416 1
## GCGAGAACATGAGCGA 5.87375864 1
## TGCCCTAGTGCACCAC -0.42046420 1
## CTAGAGTGTAAACACA 2.07444697 1
## AGTAGTCCACCGGAAA 3.98464886 1
## CATATTCTCAGCGATT 0.35512934 1
## GAATGAAGTAACGACG 1.31015961 1
## GATCAGTAGTACTTGC -3.75167056 1
## CAAGAAACAGGATTGG 3.83764871 1
## CCTATTATCAACACTG -5.68727759 1
## CAGCAGCTCTGCGGCA -2.67097026 1
## ATAAGAGAGCTGCGAA 2.81866772 1
## AGATCTGCACCTATCC -10.53155833 1
## GACACGCGTAGAGCTG -6.28180753 1
## TACACGAAGCTAGGCA 0.26584942 1
## AACACGTTCCGAAGAG -4.29921878 1
## TTAACTCGTGTAATGA 7.87178795 1
## TGGCGCAGTTCAGACT 1.05951864 1
## CATCAGAGTCTAGTCA 5.54726428 1
## CTAGAGTAGCATGGCA 6.74860631 1
## TACGGTAAGCGTGAAC 4.34339294 1
## TGACTTTTCGGATGTT 3.39041386 1
## CTCACACTCCTACAGA -8.66432922 1
## CCGTACTCACTGAAGG -5.92724179 1
## ATAACGCGTGGAAAGA -4.89083534 1
## GCTTGAAAGCTAGGCA 6.75708117 1
## AAGTCTGGTGTTGGGA -6.11249735 1
## CGATCGGGTACAGCAG 3.20085234 1
## AGTAGTCTCGATGAGG 2.51762719 1
## CGACCTTCAGACGCTC 4.50772268 1
## GCATACACATGCAACT 1.53875690 1
## TCCCGATTCGCAGGCT 8.66711686 1
## TTAGGCAAGATCGATA 5.77674193 1
## TCGTACCAGGCAAAGA -7.62956725 1
## GGATGTTGTATAGGGC 4.41660737 1
## AATCCAGCAGAGTGTG -4.31960620 1
## CATGCCTCACGGCCAT 4.85747142 1
## CTCGAAACACATGACT -0.07689102 1
## CTGCCTAGTTGCGTTA -4.57535706 1
## GGCGACTAGACAGAGA 0.16510837 1
## TACAGTGGTGTAATGA 5.76301057 1
## ACGAGCCTCTTATCTG 5.07518514 1
## GGGAATGCAAATACAG 6.71830037 1
## TGCACCTGTACCGAGA -6.22147826 1
## ATCATCTTCAGTCAGT -0.16951143 1
## CATATTCGTACAGTTC -1.90872262 1
## GCATGATGTTCCACTC -0.14753598 1
## AAGGCAGTCACGACTA 0.26554382 1
## GAAACTCTCTATCCCG -1.44928431 1
## AGCATACTCTGCTGTC 3.18573562 1
## TGGGCGTCAGCGTTCG 1.23644683 1
## TCGTAGAGTTCGTCTC -4.81356261 1
## GACAGAGGTACCGCTG 4.00260346 1
## TCTCATACACATAACC -6.72790597 1
## TGGGCGTCATTGAGCT -9.73154313 1
## CATGACACATGTCTCC -6.98352499 1
## GAATAAGGTGCACGAA 7.96834932 1
## TGCGCAGCAAGCGAGT -2.23807869 1
## CTTCTCTCAGCCAGAA -0.28475056 1
## AAGCCGCAGTGGCACA -1.19173322 1
## CTCTACGAGTGGACGT -9.95085912 1
## GTCATTTTCTATCCCG 7.31827049 1
## CGAGCACAGCCACTAT -0.37672640 1
## AGTAGTCGTAACGACG -4.80736220 1
## GACGTGCAGAGGGATA 3.00008337 1
## GTCTTCGTCCAACCAA 4.35234047 1
## CAAGGCCTCGCCCTTA -4.10777888 1
## TGTGGTACATGGTTGT 5.97931693 1
## CCTCAGTTCGAATGCT 3.10075920 1
## ACCGTAATCTGAGGGA 4.67346558 1
## GTTAAGCCAGTTCATG -5.74955731 1
## CTGCCTATCAATCTCT 1.58814641 1
## GACGGCTTCTCCAACC -0.61419188 1
## TTTCCTCCAGTTCCCT -12.34614791 1
## GCGCCAAAGCCCTAAT -1.29271016 1
## CCACCTATCCCGACTT 4.05638367 1
## TTTATGCCAGGGCATA -10.93641161 1
## TACAGTGTCGCGGATC 1.27509811 1
## AGCTCTCCACCACGTG -3.34557017 1
## GTGGGTCCATTGAGCT 10.47053957 1
## GGGATGACAGACTCGC -3.65092807 1
## ACACCAAGTTCGGGCT 5.14879219 1
## TGATTTCAGCTATGCT 1.23120054 1
## TGGCCAGAGAGGGCTT 4.47840018 1
## TCGGTAAGTAAAGTCA 7.48264607 1
## TGAAAGAGTCCCTTGT 5.75532917 1
## CCGTGGATCGTTTATC 0.42559319 1
## GAACCTATCCTCAACC -5.69093177 1
## GCGCAGTCATCCAACA 3.37677607 1
## ACATGGTTCGCGCCAA 3.75391014 1
## CTTGGCTGTACGCACC -8.30851167 1
## AGATTGCAGGCCCGTT -8.83620605 1
## AGGCCGTGTTACGGAG 5.75832235 1
## GGTGTTAGTTAAGATG -2.00817489 1
## GGAATAATCCTGTAGA 4.13971276 1
## TATTACCGTATTAGCC 1.17733605 1
## ATAACGCGTTAGTGGG -3.50692765 1
## AAACGGGGTTATCCGA 1.64545336 1
## TGTGGTATCGTTTAGG 3.87820458 1
## ATCACGAGTATGAATG 3.41487553 1
## CAGCAGCTCACCTCGT -10.44154398 1
## CCAATCCGTATTACCG 5.00515791 1
## TTCTACATCACATAGC 6.55028648 1
## TGTCCCATCGTATCAG -3.51706822 1
## AGCTCTCAGTGTTTGC -3.44325153 1
## CAACCTCAGTAACCCT 6.43545138 1
## GTGGGTCAGGTAAACT -0.64842123 1
## TAAGTGCCACGTCAGC 7.28087341 1
## GACCTGGCAGCCACCA -8.71281307 1
## ACAGCCGCAGGATCGA -6.90833618 1
## AACTCCCCAGCTCGCA -3.48441558 1
## GGAAAGCGTCTCTCGT 0.23251375 1
## CGCTTCAAGCAGGTCA 1.46609183 1
## GATCGCGAGAAGGGTA 4.14813503 1
## AAGCCGCCAGGATTGG 2.88993836 1
## ATTGGACGTCGTGGCT 4.28667964 1
## CCCATACCACTAAGTC 7.07868143 1
## TCTCTAATCCCATTTA 5.66378840 1
## TCGTAGAGTGGTACAG -2.69605685 1
## AAACGGGAGAGACGAA -2.25437695 1
## GACTACATCACCACCT 9.01486282 1
## GAAACTCAGTTGAGTA -4.50723060 1
## CCCTCCTTCCTCCTAG 1.29110803 1
## GCGACCATCACGGTTA 5.39959967 1
## TCTCTAAAGAGTCGGT 3.61876677 1
## GGCTCGATCTCACATT -0.06355014 1
## CTGATAGAGGCAGGTT 6.18298026 1
## CATGCCTAGGAGTTTA 2.49315506 1
## TGGCTGGTCAGCCTAA -4.58668200 1
## TCAGATGTCGTTACAG -7.74072556 1
## CAGCTGGGTTATGTGC -2.77598063 1
## GGAACTTAGTCGTACT -7.65630497 1
## CCGGGATCACCGGAAA 4.79185561 1
## CCTTCGATCAAAGACA -5.16949311 1
## CGAGAAGGTATCGCAT 1.23219604 1
## CCTAAAGAGACTGGGT -8.39922297 1
## CAGATCACATTGGCGC 4.88584554 1
## CTAGCCTAGCTGGAAC 5.83014130 1
## ATTGGTGTCTCGTATT 6.26252206 1
## GGGAATGTCAAAGTAG 2.12691943 1
## CCATGTCCACGGCCAT -6.39443455 1
## GGCAATTCATATGGTC -4.46128743 1
## CTGTGCTCATGTCCTC 2.10428535 1
## TTAACTCCAACGCACC 1.95839630 1
## CGAACATAGCGGCTTC -5.94601457 1
## TCGCGTTAGGCACATG 4.00673550 1
## GGGTTGCCAAACTGCT 4.09198288 1
## ATAAGAGCAGGTGCCT 0.55407994 1
## CGGACACGTATTCGTG 4.91444266 1
## CTGATAGTCACGACTA -8.04744340 1
## GAACATCGTGAGTATA 2.55620440 1
## TGCTACCAGTGGTCCC 1.52336714 1
## GCTGGGTAGTCTTGCA -6.99109831 1
## TACGGATGTCTAACGT 3.20282438 1
## TGGGCGTCAATGGATA 1.21547427 1
## CTGCTGTCATTTGCTT 1.81413427 1
## GGGCATCAGCAGCCTC 4.42006712 1
## CGTGAGCAGACTAGAT -8.24611111 1
## CAGCGACCACACCGAC 6.69669295 1
## CCCAATCCAGTTAACC 6.46831432 1
## CAGCGACTCAGCGACC 0.74564999 1
## GAGCAGAAGCTATGCT 5.40775242 1
## CTCTGGTTCACTTCAT 0.97420778 1
## CGCGTTTCAGCTGTGC 2.72469496 1
## GGACGTCCACCTCGGA -3.36186641 1
## TAGTTGGAGAGTTGGC -1.20152036 1
## ATTGGTGTCGGAATCT 0.53841459 1
## GAATGAACACGGCCAT 4.70701237 1
## GTGCATACAAGGTGTG -3.57461214 1
## GGAATAAGTCGGCACT -4.38734743 1
## ACCCACTTCCAAAGTC -4.50665306 1
## ACTATCTCAATTCCTT 7.01717630 1
## AGCATACAGTGGGATC 2.49401762 1t-SNE + Metadata Plots
tSNE_metadata_plot <- function(var){
print(paste("t-SNE Metadata plot for ", var))
# Metadata plot
p1 <- TSNEPlot(pbmc, do.return = T, do.label = T, group.by = var, pt.size=1,
plot.title=paste("Color by ",var), vector.friendly=T) %>%
# layout(legend = list(orientation = 'h', xanchor = "center", x = 0.5, y = .999))
# t-SNE clusters plot
p2 <- TSNEPlot(pbmc, do.return = T, do.label = T, pt.size=1,
plot.title=paste("Color by Clusters"), vector.friendly=T) %>%
layout(legend = list(orientation = 'h', xanchor = "center", x = 0.5, y = .999))
#print(plot_grid(ggplotly(p1), ggplotly(p2)))
fluidPage(
fluidRow(
column(6, p1), column(6, p2)
)
)
}
# metaVars <- c(dx","mut","Gender","Age")
#
# for (var in metaVars){
# print(paste("t-SNE Metadata plot for ",var))
# # Metadata plot
# p1 <- TSNEPlot(pbmc, do.return = T, pt.size = 0.5, group.by = var, do.label = T,
# dark.theme=F, plot.title=paste("Color by ",var))
# # t-SNE clusters plot
# p2 <- TSNEPlot(pbmc, do.label = T, do.return = T, pt.size = 0.5, plot.title=paste("Color by t-SNE clusters"))
# print(plot_grid(p1, p2))
# } tSNE Disease
tSNE_metadata_plot("dx") ## [1] "t-SNE Metadata plot for dx"## Error in UseMethod("layout"): no applicable method for 'layout' applied to an object of class "c('gg', 'ggplot')"Mutations
tSNE_metadata_plot("mut") ## [1] "t-SNE Metadata plot for mut"## Error in UseMethod("layout"): no applicable method for 'layout' applied to an object of class "c('gg', 'ggplot')"Gender
tSNE_metadata_plot("Gender") ## [1] "t-SNE Metadata plot for Gender"## Error in UseMethod("layout"): no applicable method for 'layout' applied to an object of class "c('gg', 'ggplot')"Age
tSNE_metadata_plot("Age") ## [1] "t-SNE Metadata plot for Age"## Error in UseMethod("layout"): no applicable method for 'layout' applied to an object of class "c('gg', 'ggplot')"Cluster Biomarkers
Seurat has several tests for differential expression which can be set with the test.use parameter (see the DE vignette for details). For example, the ROC test returns the ‘classification power’ for any individual marker (ranging from 0 - random, to 1 - perfect).
Shown here: Biomarkers of each cluster vs. all other clusters.
Biomarkers Data
All Biomarkers
# Limit to only top variable genes?:
# Set arg 'only.pos=F' to capture negative biomarkers
pbmc.markers <- FindAllMarkers(object = pbmc, min.pct = 0.25, thresh.use = 0.25, only.pos = F, test.use = "wilcox")
pbmc.markers <- pbmc.markers %>% mutate(FC = 2^avg_logFC)
createDT(pbmc.markers, caption = paste("All Biomarkers: All Clusters"))Top Biomarkers
topNum = 5
topBiomarkers <- pbmc.markers %>% group_by(cluster) %>% top_n(topNum, avg_logFC)
createDT(pbmc.markers, caption = paste("All Biomarkers: All Clusters"))Cluster Biomarker: Violin Plots
getTopBiomarker <- function(pbmc.markers, clusterID, topN=1){
df <-pbmc.markers %>%
subset(p_val_adj<0.05 & cluster==as.character(clusterID)) %>%
arrange(desc(avg_logFC))
top_pct_markers <- df[1:topN,"gene"]
return(top_pct_markers)
}
# clust1_biomarkers <- getTopBiomarker(pbmc.markers, clusterID=1, topN=2)
# clust2_biomarkers <- getTopBiomarker(pbmc.markers, clusterID=2, topN=2)
### Plot biomarkers
plotBiomarkers <- function(pbmc, biomarkers, cluster){
biomarkerPlots <- list()
for (marker in biomarkers){
p <- VlnPlot(object = pbmc, features.plot = c(marker), y.log=T, return.plotlist=T)
biomarkerPlots[[marker]] <- p + ggplot2::aes(alpha=0.5) + xlab( "Cluster") + ylab( "Expression")
}
combinedPlot <- do.call(grid.arrange, c(biomarkerPlots, list(ncol=2, top=paste("Top DEG Biomarkers for Cluster",cluster))) )
# biomarkerPlots <- lapply(biomarkers, function(marker) {
# VlnPlot(object = pbmc, features.plot = c(marker), y.log=T, return.plotlist=T) %>% + ggplot2::ggtitle(marker) %>% ggplotly()
# })
# return(subplot(biomarkerPlots) )
}
top1 <- pbmc.markers %>% group_by(cluster) %>% top_n(1, avg_logFC)
nCols <- floor( sqrt(length(unique(top1$cluster))) )
figHeight <- nCols *7
# Plot top 2 biomarker genes for each
for (clust in unique(pbmc.markers$cluster)){
cat('\n')
cat("### Cluster ",clust,"\n")
biomarkers <- getTopBiomarker(pbmc.markers, clusterID=clust, topN=2)
plotBiomarkers(pbmc, biomarkers, clust)
cat('\n')
} Cluster 0
Cluster 1
Cluster Biomarker: Volcano Plots
##Construct the plot object
volcanoPlot <- function(DEG_df, caption="", topFC_labeled=5){
DEG_df$sig<- ifelse( DEG_df$p_val_adj<0.05 & DEG_df$avg_logFC<1.5, "p_val_adj<0.05",
ifelse( DEG_df$p_val_adj<0.05 & DEG_df$avg_logFC>1.5, "p_val_adj<0.05 & avg_logFC>1.5",
"p_val_adj>0.05"
))
DEG_df <- arrange(DEG_df, desc(sig))
vol <- ggplot(data=DEG_df, aes(x=avg_logFC, y= -log10(p_val_adj))) +
geom_point(alpha=0.5, size=3, aes(col=sig)) +
scale_color_manual(values=list("p_val_adj<0.05"="turquoise3",
"p_val_adj<0.05 & avg_logFC>1.5"="purple",
"p_val_adj>0.05" = "darkgray")) +
theme(legend.position = "none") +
xlab(expression(paste("Average ",log^{2},"(fold change)"))) +
ylab(expression(paste(-log^{10},"(p-value)"))) + xlim(-2,2) +
## ggrepl labels
geom_text_repel(data= arrange(DEG_df, p_val_adj, desc(avg_logFC))[1:topFC_labeled,],
# filter(DEG_df, avg_logFC>=1.5)[1:10,],
aes(label=gene), color="black", alpha=.5,
segment.color="black", segment.alpha=.5
) +
# Lines
geom_vline(xintercept= -1.5,lty=4, lwd=.3, alpha=.5) +
geom_vline(xintercept= 1.5,lty=4, lwd=.3, alpha=.5) +
geom_hline(yintercept= -log10(0.05),lty=4, lwd=.3, alpha=.5) +
ggtitle(caption)
print(vol)
}
for (clust in unique(pbmc.markers$cluster)){
cat('\n')
cat("### Cluster ",clust,": Volcano")
cap <- paste("Cluster",clust,"DEG Table")
DEG_df <- subset(pbmc.markers, cluster==as.character(clust)) %>% arrange(desc(avg_logFC))
volcanoPlot(DEG_df, caption = cap)
createDT(DEG_df, caption = cap)
cat('\n')
}##
## ### Cluster 0 : Volcano
##
##
## ### Cluster 1 : Volcano
Top Biomarker Plot
Biomarkers tSNE
fp <- FeaturePlot(object = pbmc, features.plot = top1$gene, cols.use = c("grey", "purple"),
reduction.use = "tsne", nCol = nCols, do.return = T)
Biomarkers Heatmap
top5 <- pbmc.markers %>% group_by(cluster) %>% top_n(5, avg_logFC)
# setting slim.col.label to TRUE will print just the cluster IDS instead of
# every cell name
p <- DoHeatmap(object = pbmc, genes.use = top5$gene, slim.col.label=T, remove.key=T)
ifelse(interactive, p %>% ggplotly() %>% toWebGL() %>% print(), print(p))
## [[1]]
## cell gene expression ident
## 1 GTCATTTTCCGCATCT CFD 0.3048683883 1
## 2 ATAAGAGAGGAGTTGC CFD 0.2641856840 1
## 3 CATTATCCATGGTCTA CFD 0.7536857043 0
## 4 CTTAGGAGTGGCGAAT CFD 0.1539306498 0
## 5 CATCAGAAGCACCGCT CFD -0.2456560016 0
## 6 GCGGGTTAGTAGCCGA CFD -0.3300627442 0
## 7 CAGAGAGAGCGCCTTG CFD 0.1018353597 0
## 8 CTGAAGTCAGACACTT CFD 0.8340648306 0
## 9 GGACGTCCAGGTGCCT CFD -0.7863998695 1
## 10 AAAGCAAGTGGTGTAG CFD -1.7589225367 0
## 11 TCTCATACAGGGCATA CFD 0.1536905034 0
## 12 AACTCAGGTACTCGCG CFD 0.0393522789 0
## 13 CACATTTGTGAGTATA CFD 0.3660059017 0
## 14 ACTTTCAAGGTGTTAA CFD -0.7362153963 1
## 15 TGCCCATCAGACGCAA CFD 0.9477649698 0
## 16 CTAAGACCAATGCCAT CFD 0.2278682547 0
## 17 CGGAGCTCATTTGCTT CFD -1.6472185502 0
## 18 GAGCAGATCGACGGAA CFD 0.2463768270 0
## 19 TAAACCGAGATCGATA CFD -0.5511566763 0
## 20 GTCTCGTGTACATCCA CFD -0.2793875971 0
## 21 GTATCTTAGACCCACC CFD -0.1612449859 1
## 22 GAGCAGAAGAGCCTAG CFD -1.7230661861 1
## 23 GTGCAGCTCACATAGC CFD 0.4560958621 0
## 24 CCTATTAGTAAACCTC CFD 0.4665627039 0
## 25 AGAGTGGAGTTTAGGA CFD -0.4857585630 0
## 26 TACGGGCAGGTGATTA CFD -0.1165157334 0
## 27 ACTATCTCAATCTACG CFD 1.0151271614 0
## 28 CGAGCCATCAGGCAAG CFD 0.3184446394 0
## 29 CGAATGTCAATTGCTG CFD 0.6712761908 0
## 30 TACGGTATCGTTACGA CFD -0.4973007093 0
## 31 CTGTGCTCAAGGTGTG CFD -0.0091204852 0
## 32 CCATGTCGTAACGACG CFD 0.0238378419 0
## 33 TGCTGCTAGACACTAA CFD -1.7430435805 0
## 34 ACGGGTCTCGCTTAGA CFD -0.5920231854 0
## 35 ACGAGGAAGGCTAGCA CFD 0.5867241345 0
## 36 GCACTCTGTCGGCACT CFD -0.2727298254 0
## 37 ATCATGGGTTTAAGCC CFD 0.1837589917 0
## 38 GCATGTAGTAAAGGAG CFD 0.1453013123 0
## 39 CAACTAGAGTGGGCTA CFD 0.8954171006 0
## 40 AACACGTCAATCAGAA CFD -1.6684040739 1
## 41 AAAGTAGGTGTCTGAT CFD 0.2499303208 1
## 42 CTCATTATCGCTGATA CFD 0.5498993737 0
## 43 TACTCGCCAACGCACC CFD 0.3308876605 0
## 44 GGACATTGTCCTGCTT CFD -1.6123073852 1
## 45 ACTGAACAGAGCTGGT CFD -0.4365473241 0
## 46 CTCGGGAAGTGCAAGC CFD 0.0778372572 0
## 47 AGCTCCTAGCATGGCA CFD 1.6656724201 0
## 48 TATTACCGTCGACTGC CFD 1.2168764842 0
## 49 GAACGGACATTTCACT CFD -0.2554050448 0
## 50 CACAAACTCCCGGATG CFD -0.2618024927 0
## 51 GCTCCTAAGGGAGTAA CFD 0.3185674822 0
## 52 GACTAACCATCACGTA CFD -1.6848594344 1
## 53 TACTCGCTCTTAACCT CFD 1.5276634996 0
## 54 AGGCCGTCAGGAACGT CFD 0.4114011629 0
## 55 CCACTACAGTGCTGCC CFD -1.9616351010 0
## 56 ATCCACCCAAGCCGTC CFD -0.1494670538 0
## 57 GAGTCCGAGACTGTAA CFD 0.5956322043 0
## 58 AAGCCGCCAGAAGCAC CFD -1.6319486395 0
## 59 GACACGCCAGATTGCT CFD 0.4366102132 0
## 60 CGACTTCAGGCTACGA CFD 0.3401516841 0
## 61 GGGTTGCCAGTAAGCG CFD 1.2079717190 0
## 62 AGTGAGGGTCAGAATA CFD 0.8998585072 0
## 63 GATCTAGCAGCCACCA CFD 0.4096340733 0
## 64 ACGAGGACAAGACGTG CFD 0.4994294377 0
## 65 CATATGGCAAGCCGCT CFD 1.2461929121 0
## 66 TTATGCTCAGACGCTC CFD 1.0701662289 0
## 67 AGTGTCAAGTCGCCGT CFD 0.3355680643 0
## 68 AAGGCAGGTCTGCCAG CFD 1.1908729217 0
## 69 TCAGGATAGCCCGAAA CFD 1.2622494269 0
## 70 CCACTACCACTAGTAC CFD 0.3831345169 1
## 71 AGCAGCCTCGCCAAAT CFD -0.3425026952 0
## 72 CTGCCTATCCATGCTC CFD -0.3945235145 0
## 73 GCTGCAGCATAGTAAG CFD 0.7198020385 0
## 74 GCGCAGTTCAGTTCGA CFD -0.3939155072 1
## 75 GGGCATCGTAGCGCTC CFD -1.6731077286 0
## 76 CTAATGGGTTACGTCA CFD 1.2588682674 0
## 77 ATTCTACGTTATCGGT CFD 1.3784633238 0
## 78 GAAATGATCAGCTGGC CFD -0.3826623301 0
## 79 TGCTACCTCGTCCAGG CFD 0.2240217282 0
## 80 ACATGGTCACTTACGA CFD -1.4979731825 0
## 81 ACTTTCAAGCGTTGCC CFD 1.0165989061 0
## 82 CCTACACGTAAACCTC CFD -0.2658437889 0
## 83 ATTGGTGAGATCCCAT CFD 1.1126530774 0
## 84 CCGGGATCACAGACAG CFD -0.2849414010 0
## 85 CAGTAACTCTCTTGAT CFD 1.3311866544 0
## 86 ATCTACTCAATAGCGG CFD 0.3233966057 0
## 87 ACCCACTGTTAAGAAC CFD -1.5151725140 1
## 88 ACATACGTCTGCTTGC CFD -0.2889189245 0
## 89 CGTCTACGTTGAACTC CFD 1.0432032131 0
## 90 ATTATCCCAGCAGTTT CFD 1.2715059040 0
## 91 GAAACTCTCGTTACGA CFD 0.5589373918 0
## 92 GATGAAACATCATCCC CFD 1.4444627363 0
## 93 CACAGTATCTGTCCGT CFD 0.1030112841 0
## 94 TGAAAGAAGGAGCGAG CFD -0.2870384179 0
## 95 CCGGTAGAGACCGGAT CFD 0.6341893960 0
## 96 TGCGGGTTCTAACCGA CFD -1.7809067333 1
## 97 GGCGACTTCGCGCCAA CFD -0.2958524706 0
## 98 GGGATGAAGTCGCCGT CFD 0.7448760471 0
## 99 GATTCAGGTACAGACG CFD -0.3198698516 0
## 100 TAGACCACAAGAAGAG CFD 0.2128069245 0
## 101 AATCCAGGTCAGAGGT CFD -0.2579488010 1
## 102 TGAGCCGCAATGGACG CFD 0.9875282039 0
## 103 CACATAGGTACTCTCC CFD 0.5318651046 0
## 104 CATGGCGAGCAATATG CFD -1.6918145296 1
## 105 CAGTAACGTTATTCTC CFD -1.7140368143 1
## 106 GCGAGAAGTTCCGTCT CFD -1.6534604866 0
## 107 TTTACTGGTCCCTTGT CFD -0.4408924782 1
## 108 ATCATGGCACGAAATA CFD -1.7012836898 0
## 109 CGCCAAGAGGCAGTCA CFD -0.1135262900 0
## 110 CGTCCATGTCCAGTAT CFD 1.2383926337 0
## 111 TGGCGCATCCATTCTA CFD 1.2845888834 0
## 112 CCCATACGTAGCTTGT CFD 0.8748727655 0
## 113 GCATGCGGTGCTGTAT CFD -1.7163456154 0
## 114 TTCTTAGCATGCTAGT CFD 0.0884006841 0
## 115 TGCGCAGAGTGGACGT CFD -1.4172628015 1
## 116 ATTATCCGTTGCTCCT CFD 0.8912578827 0
## 117 AGAATAGAGACTAGGC CFD 0.9877306418 0
## 118 CCTACACAGCTGCAAG CFD 0.3369503341 1
## 119 GACAGAGAGTGCTGCC CFD -0.2285963659 0
## 120 GTTCGGGTCCCAAGAT CFD 0.7993980630 0
## 121 AGTAGTCGTAAGCACG CFD -1.7153091284 0
## 122 CTCACACGTACCTACA CFD -0.0703094964 0
## 123 GCAGTTAAGTGGGTTG CFD -1.9251178140 0
## 124 GTCAAGTCAGCTCGAC CFD 0.4648834831 1
## 125 GCTGCGATCCCTAACC CFD -1.3910502944 1
## 126 GATCGTATCCCTAACC CFD 0.7307363409 0
## 127 TGAGAGGTCCGTAGTA CFD 0.4372305831 0
## 128 CTCGTCAGTGCACTTA CFD 1.6406084587 0
## 129 AGCATACAGCAAATCA CFD -1.6011786079 0
## 130 TCGGGACGTGTCAATC CFD -0.2657097730 0
## 131 ATGCGATGTAAACACA CFD 1.2697840047 0
## 132 CATGACACACAACGTT CFD 0.7154969548 0
## 133 GCTTGAAGTGCTAGCC CFD 0.3534524994 0
## 134 TTTGGTTTCTCTTATG CFD 0.5992130746 0
## 135 ACACCCTGTGAAATCA CFD 1.0131221040 0
## 136 ATCATGGTCCCTCAGT CFD 1.3226367550 0
## 137 CCTCTGACAATCAGAA CFD -0.0691698841 0
## 138 ACATACGAGACACTAA CFD 0.1950303689 0
## 139 TCACAAGTCCGTAGGC CFD -1.4069633990 1
## 140 GCAGTTAGTCCAGTGC CFD -1.6100222683 1
## 141 AGTGAGGGTTACAGAA CFD -0.1737552268 0
## 142 CACACAAGTAATCACC CFD 0.7669335839 0
## 143 GATCGCGAGGCTAGAC CFD 0.2030145686 0
## 144 CTCGTACTCCTTTCGG CFD -1.8844782135 0
## 145 ATCCACCTCGGCGGTT CFD 1.3147160538 0
## 146 GAAGCAGAGCTAGTTC CFD 0.9118063546 0
## 147 CAGTCCTAGTGTCTCA CFD 0.9222352616 0
## 148 CGCTTCACAATGGATA CFD -0.3822884892 0
## 149 TCCCGATTCATATCGG CFD -0.3091970533 0
## 150 TGTGGTACATATACCG CFD -0.3562834248 0
## 151 TACCTTACACTACAGT CFD 0.8524669940 1
## 152 GTAGGCCGTCCGTCAG CFD 1.0340170439 0
## 153 CAGAATCCAATCAGAA CFD 0.6242523500 0
## 154 GGATTACTCTGTGCAA CFD -1.5838366379 1
## 155 GTCGTAAGTTTGTTTC CFD -0.4138361354 0
## 156 GATCGTAAGCCAGTAG CFD 1.3030925741 0
## 157 GACTACAGTTAAAGAC CFD 0.4782074531 0
## 158 CATGACACAACACCTA CFD 0.6797178973 0
## 159 CACCAGGTCACGCGGT CFD -1.7360701823 0
## 160 GTCTTCGTCTGAGTGT CFD -0.4458461569 1
## 161 CCTTCGAAGTGGGATC CFD -0.0602365490 0
## 162 GTGCGGTGTCCTGCTT CFD 0.4791828982 0
## 163 GTCACAACATGCCTTC CFD 0.4763452175 1
## 164 CAGAGAGTCAGTCAGT CFD 0.4163318235 0
## 165 GTGCGGTGTACTCTCC CFD 0.9786114306 0
## 166 CAGCTAATCAAGATCC CFD 0.8710237789 1
## 167 CAAGATCGTTGGGACA CFD 0.8630953744 0
## 168 TTTATGCCATCACAAC CFD 1.3333524182 0
## 169 CGGTTAATCCCAAGTA CFD -0.1657902228 0
## 170 TAGCCGGTCCGTAGTA CFD -0.0942643357 1
## 171 ACGAGCCGTGTTTGTG CFD 1.0671632880 0
## 172 AGCATACCAAACCCAT CFD 0.6197686906 0
## 173 GAAATGATCAACACTG CFD -0.1321469471 0
## 174 TATCTCACATAACCTG CFD -0.3258734586 0
## 175 CCGTACTCACTTCTGC CFD 0.4655247216 1
## 176 CTAGAGTTCAGAGGTG CFD 0.9589413633 0
## 177 CTGATAGCATACAGCT CFD -1.6281526240 0
## 178 TCGAGGCCACGGTAGA CFD -1.6937415979 1
## 179 GATCAGTTCACTTATC CFD -0.4563947605 0
## 180 GTTTCTAAGCCCTAAT CFD 0.2202459957 0
## 181 CAGCTGGAGGAATTAC CFD 0.0215568685 1
## 182 AGAGTGGTCGATCCCT CFD 1.2720151292 0
## 183 CATGGCGCAACTGCTA CFD 0.8893289440 0
## 184 CTGGTCTGTATATGGA CFD 0.5624345296 1
## 185 CGTCACTCACAGGAGT CFD -0.2693407413 0
## 186 AACTGGTTCAACCAAC CFD -1.4503533851 1
## 187 CCATTCGCAGGGAGAG CFD 0.7134661515 0
## 188 CATCAGATCTTCAACT CFD 0.7991996220 0
## 189 GAATGAATCAGGCAAG CFD 0.1732410854 0
## 190 TGTCCCATCGAATGCT CFD -0.0356634081 0
## 191 AGTGGGACAGCCAATT CFD -0.0608604039 0
## 192 AGAGCTTTCACATGCA CFD 0.4005262168 0
## 193 TGCGGGTTCTGCAGTA CFD 1.2316354169 0
## 194 GTCGTAAGTCGGCACT CFD -0.7570883627 0
## 195 CTCGAGGTCGGAGCAA CFD -1.6172643699 0
## 196 CTACACCAGATGAGAG CFD 0.9255019851 0
## 197 ACGGCCATCTTACCTA CFD -0.1572529962 0
## 198 CCCAGTTCACACCGAC CFD 0.0500804549 1
## 199 TCGGGACTCGGATGGA CFD -1.5901371553 1
## 200 CATCGGGTCCCGACTT CFD 0.5462493835 1
## 201 CTTAACTGTAAGGATT CFD -1.4401140859 0
## 202 AACCATGAGCGTAATA CFD -1.5045297312 0
## 203 TCAGATGGTCTTCTCG CFD -0.1459647951 0
## 204 CTCACACTCCCAACGG CFD -0.0230316551 0
## 205 CCATGTCAGGATGGAA CFD 0.9679951736 0
## 206 GGGTCTGGTACTTGAC CFD 0.4674092672 0
## 207 GGAACTTCACAGTCGC CFD 0.9166965600 0
## 208 GACCTGGCACATCCAA CFD 0.3110865548 0
## 209 CAGTCCTCAAGACACG CFD -1.5411072989 1
## 210 AGATCTGCATATGGTC CFD 1.3870704030 0
## 211 CATCAGAGTATTCTCT CFD 0.6124786341 0
## 212 TGCACCTTCGATAGAA CFD 0.4168905218 0
## 213 CCTACACTCCCAAGTA CFD 1.2964365097 0
## 214 ACTTTCATCGTAGATC CFD -1.6786458562 1
## 215 TTGCGTCCACCATGTA CFD 0.9087421279 0
## 216 AAATGCCAGGTGCTAG CFD 1.0536488595 0
## 217 ATGCGATGTCCATCCT CFD 0.9072478345 1
## 218 CCAGCGAAGCCACTAT CFD -1.5470671210 0
## 219 TACTTGTAGTGTACTC CFD -1.4254799529 0
## 220 AGGGATGTCTCGCTTG CFD -1.5338815918 1
## 221 TGTCCCAGTATTAGCC CFD 0.6037110204 0
## 222 TGCTACCTCGCACTCT CFD -1.2986195535 0
## 223 GTAACGTCAGTATAAG CFD -1.4001909812 1
## 224 GCGCAACGTTCGTTGA CFD 0.0274737711 1
## 225 GCGAGAACATGAGCGA CFD 0.5462037503 1
## 226 TGCCCTAGTGCACCAC CFD -1.5285875558 1
## 227 CTAGAGTGTAAACACA CFD -0.2254600736 0
## 228 AGTAGTCCACCGGAAA CFD -0.2041418109 0
## 229 CATATTCTCAGCGATT CFD -1.2720893211 0
## 230 GAATGAAGTAACGACG CFD 0.9713787290 0
## 231 GATCAGTAGTACTTGC CFD -0.1541202195 0
## 232 CAAGAAACAGGATTGG CFD -0.1304275837 1
## 233 CCTATTATCAACACTG CFD 1.2860746115 0
## 234 CAGCAGCTCTGCGGCA CFD -1.6604329367 0
## 235 ATAAGAGAGCTGCGAA CFD 0.9235835147 0
## 236 AGATCTGCACCTATCC CFD 0.0172726105 0
## 237 GACACGCGTAGAGCTG CFD -0.1448213608 0
## 238 TACACGAAGCTAGGCA CFD -1.4939066210 0
## 239 AACACGTTCCGAAGAG CFD 0.3871342364 0
## 240 TTAACTCGTGTAATGA CFD -0.1444505566 1
## 241 TGGCGCAGTTCAGACT CFD 0.7003305361 0
## 242 CATCAGAGTCTAGTCA CFD 0.6241383755 1
## 243 CTAGAGTAGCATGGCA CFD 0.8103001555 0
## 244 TACGGTAAGCGTGAAC CFD -0.3179376142 0
## 245 TGACTTTTCGGATGTT CFD -1.4214822453 1
## 246 CTCACACTCCTACAGA CFD 0.4947623793 0
## 247 CCGTACTCACTGAAGG CFD 0.1329420519 0
## 248 ATAACGCGTGGAAAGA CFD 1.0384297370 0
## 249 GCTTGAAAGCTAGGCA CFD 0.3428285532 1
## 250 AAGTCTGGTGTTGGGA CFD 1.6729258264 0
## 251 CGATCGGGTACAGCAG CFD -0.0581745169 0
## 252 AGTAGTCTCGATGAGG CFD -1.6498376923 0
## 253 CGACCTTCAGACGCTC CFD -1.4620236563 1
## 254 GCATACACATGCAACT CFD 1.2015274206 0
## 255 TCCCGATTCGCAGGCT CFD -0.3648027355 0
## 256 TTAGGCAAGATCGATA CFD -1.3811453491 1
## 257 TCGTACCAGGCAAAGA CFD -0.0633364532 0
## 258 GGATGTTGTATAGGGC CFD 0.0492836576 0
## 259 AATCCAGCAGAGTGTG CFD 1.0862373459 0
## 260 CATGCCTCACGGCCAT CFD -0.0544532434 1
## 261 CTCGAAACACATGACT CFD 1.4334088754 0
## 262 CTGCCTAGTTGCGTTA CFD 0.0092232844 0
## 263 GGCGACTAGACAGAGA CFD 1.0864145947 1
## 264 TACAGTGGTGTAATGA CFD -1.5146345918 1
## 265 ACGAGCCTCTTATCTG CFD 1.1711180509 0
## 266 GGGAATGCAAATACAG CFD -1.5513334795 1
## 267 TGCACCTGTACCGAGA CFD 1.3479576947 0
## 268 ATCATCTTCAGTCAGT CFD -0.0008859123 0
## 269 CATATTCGTACAGTTC CFD 0.1249530934 0
## 270 GCATGATGTTCCACTC CFD 0.6346762587 0
## 271 AAGGCAGTCACGACTA CFD -0.2672800125 0
## 272 GAAACTCTCTATCCCG CFD 0.4537630555 0
## 273 AGCATACTCTGCTGTC CFD -1.5630153280 1
## 274 TGGGCGTCAGCGTTCG CFD -0.3072426282 1
## 275 TCGTAGAGTTCGTCTC CFD -0.3225483855 0
## 276 GACAGAGGTACCGCTG CFD -1.4064344887 1
## 277 TCTCATACACATAACC CFD -1.3299297857 0
## 278 TGGGCGTCATTGAGCT CFD 0.9290770987 0
## 279 CATGACACATGTCTCC CFD -1.4874293553 0
## 280 GAATAAGGTGCACGAA CFD -1.3736666898 1
## 281 TGCGCAGCAAGCGAGT CFD 0.3753438297 0
## 282 CTTCTCTCAGCCAGAA CFD -0.2068135309 0
## 283 AAGCCGCAGTGGCACA CFD 0.0980811924 0
## 284 CTCTACGAGTGGACGT CFD 0.4837366178 0
## 285 GTCATTTTCTATCCCG CFD 0.9905806828 0
## 286 CGAGCACAGCCACTAT CFD -1.5456822065 1
## 287 AGTAGTCGTAACGACG CFD 1.0988996448 0
## 288 GACGTGCAGAGGGATA CFD 0.1612941480 0
## 289 GTCTTCGTCCAACCAA CFD 0.4829576615 0
## 290 CAAGGCCTCGCCCTTA CFD 0.4883954513 0
## 291 TGTGGTACATGGTTGT CFD -1.6871452625 0
## 292 CCTCAGTTCGAATGCT CFD -1.2298299343 1
## 293 ACCGTAATCTGAGGGA CFD 0.0526222871 1
## 294 GTTAAGCCAGTTCATG CFD 1.7192824560 0
## 295 CTGCCTATCAATCTCT CFD -1.4549177014 0
## 296 GACGGCTTCTCCAACC CFD 0.0850742452 0
## 297 TTTCCTCCAGTTCCCT CFD -1.4694273771 0
## 298 GCGCCAAAGCCCTAAT CFD 0.7093808168 0
## 299 CCACCTATCCCGACTT CFD -1.5498688364 1
## 300 TTTATGCCAGGGCATA CFD -1.6074307925 1
## 301 TACAGTGTCGCGGATC CFD -1.5727182814 1
## 302 AGCTCTCCACCACGTG CFD 0.3239288304 0
## 303 GTGGGTCCATTGAGCT CFD -0.2003178573 1
## 304 GGGATGACAGACTCGC CFD 0.4193717432 0
## 305 ACACCAAGTTCGGGCT CFD -1.6973878918 1
## 306 TGATTTCAGCTATGCT CFD 0.0261140044 1
## 307 TGGCCAGAGAGGGCTT CFD 0.5531177192 0
## 308 TCGGTAAGTAAAGTCA CFD 1.7917882440 0
## 309 TGAAAGAGTCCCTTGT CFD -1.3301909744 1
## 310 CCGTGGATCGTTTATC CFD -1.2725617424 1
## 311 GAACCTATCCTCAACC CFD -0.1157963793 0
## 312 GCGCAGTCATCCAACA CFD -0.0434277639 1
## 313 ACATGGTTCGCGCCAA CFD -1.3854326041 1
## 314 CTTGGCTGTACGCACC CFD 1.6082160932 0
## 315 AGATTGCAGGCCCGTT CFD -0.1566813362 0
## 316 AGGCCGTGTTACGGAG CFD -0.4019824777 1
## 317 GGTGTTAGTTAAGATG CFD 0.8441385367 0
## 318 GGAATAATCCTGTAGA CFD 0.1428599210 1
## 319 TATTACCGTATTAGCC CFD -1.5297460319 1
## 320 ATAACGCGTTAGTGGG CFD -1.5404446887 0
## 321 AAACGGGGTTATCCGA CFD 1.3126605177 0
## 322 TGTGGTATCGTTTAGG CFD -1.2817697965 1
## 323 ATCACGAGTATGAATG CFD -0.1611919295 1
## 324 CAGCAGCTCACCTCGT CFD 0.1038766700 0
## 325 CCAATCCGTATTACCG CFD 1.0873095199 1
## 326 TTCTACATCACATAGC CFD 0.6769316954 0
## 327 TGTCCCATCGTATCAG CFD 0.7716059931 0
## 328 AGCTCTCAGTGTTTGC CFD 0.6531444113 0
## 329 CAACCTCAGTAACCCT CFD 1.3625150023 0
## 330 GTGGGTCAGGTAAACT CFD 0.2785418513 0
## 331 TAAGTGCCACGTCAGC CFD 1.2588126125 1
## 332 GACCTGGCAGCCACCA CFD 0.4494779618 0
## 333 ACAGCCGCAGGATCGA CFD -0.0583209381 0
## 334 AACTCCCCAGCTCGCA CFD -0.2115553967 0
## 335 GGAAAGCGTCTCTCGT CFD 1.0693419772 0
## 336 CGCTTCAAGCAGGTCA CFD 0.6912327087 1
## 337 GATCGCGAGAAGGGTA CFD -1.4614470964 1
## 338 AAGCCGCCAGGATTGG CFD -1.5263456003 1
## 339 ATTGGACGTCGTGGCT CFD 0.8424198502 0
## 340 CCCATACCACTAAGTC CFD 0.2127991062 0
## 341 TCTCTAATCCCATTTA CFD -1.2236588644 1
## 342 TCGTAGAGTGGTACAG CFD -1.5444689499 1
## 343 AAACGGGAGAGACGAA CFD 1.6426232372 0
## 344 GACTACATCACCACCT CFD 0.1442468149 0
## 345 GAAACTCAGTTGAGTA CFD 0.7277901558 0
## 346 CCCTCCTTCCTCCTAG CFD -1.3863101268 1
## 347 GCGACCATCACGGTTA CFD -1.8520090743 0
## 348 TCTCTAAAGAGTCGGT CFD -0.1736116477 1
## 349 GGCTCGATCTCACATT CFD 0.5452853879 0
## 350 CTGATAGAGGCAGGTT CFD -0.3006055158 1
## 351 CATGCCTAGGAGTTTA CFD -0.2702550375 1
## 352 TGGCTGGTCAGCCTAA CFD 1.3402244034 0
## 353 TCAGATGTCGTTACAG CFD 0.6538245386 0
## 354 CAGCTGGGTTATGTGC CFD -1.5939172957 0
## 355 GGAACTTAGTCGTACT CFD 1.0842021085 0
## 356 CCGGGATCACCGGAAA CFD 0.1239704202 1
## 357 CCTTCGATCAAAGACA CFD 0.9539582226 0
## 358 CGAGAAGGTATCGCAT CFD -1.4128772339 1
## 359 CCTAAAGAGACTGGGT CFD -0.4127522357 0
## 360 CAGATCACATTGGCGC CFD -1.5037951788 1
## 361 CTAGCCTAGCTGGAAC CFD -0.4066476712 1
## 362 ATTGGTGTCTCGTATT CFD 1.9585134360 0
## 363 GGGAATGTCAAAGTAG CFD -1.5595331696 1
## 364 CCATGTCCACGGCCAT CFD 0.6082438988 0
## 365 GGCAATTCATATGGTC CFD 1.0081079947 0
## 366 CTGTGCTCATGTCCTC CFD 0.4603276179 0
## 367 TTAACTCCAACGCACC CFD 0.0921560379 0
## 368 CGAACATAGCGGCTTC CFD 1.4579300155 0
## 369 TCGCGTTAGGCACATG CFD -1.3049985936 1
## 370 GGGTTGCCAAACTGCT CFD 0.1470350287 0
## 371 ATAAGAGCAGGTGCCT CFD -1.5478380937 1
## 372 CGGACACGTATTCGTG CFD 1.3702322613 0
## 373 CTGATAGTCACGACTA CFD 0.7266830837 0
## 374 GAACATCGTGAGTATA CFD 1.0729171286 0
## 375 TGCTACCAGTGGTCCC CFD -1.5576262192 0
## 376 GCTGGGTAGTCTTGCA CFD 1.6425210920 0
## 377 TACGGATGTCTAACGT CFD 0.2894814393 0
## 378 TGGGCGTCAATGGATA CFD -1.2430792203 1
## 379 CTGCTGTCATTTGCTT CFD 1.3484282618 0
## 380 GGGCATCAGCAGCCTC CFD -1.8856082386 1
## 381 CGTGAGCAGACTAGAT CFD -1.6644013076 0
## 382 CAGCGACCACACCGAC CFD 0.1970697724 0
## 383 CCCAATCCAGTTAACC CFD 1.6433285837 0
## 384 CAGCGACTCAGCGACC CFD 0.1301039084 0
## 385 GAGCAGAAGCTATGCT CFD 1.4217043972 0
## 386 CTCTGGTTCACTTCAT CFD 0.6479846440 0
## 387 CGCGTTTCAGCTGTGC CFD -1.4651144033 1
## 388 GGACGTCCACCTCGGA CFD 0.8720028344 0
## 389 TAGTTGGAGAGTTGGC CFD -1.4867322490 0
## 390 ATTGGTGTCGGAATCT CFD 1.2070202161 0
## 391 GAATGAACACGGCCAT CFD 1.0368382846 0
## 392 GTGCATACAAGGTGTG CFD -1.7405133973 0
## 393 GGAATAAGTCGGCACT CFD 1.6398858378 0
## 394 ACCCACTTCCAAAGTC CFD 0.7449459454 0
## 395 ACTATCTCAATTCCTT CFD 0.1175059111 1
## 396 AGCATACAGTGGGATC CFD 0.1364238238 0
## 397 GTCATTTTCCGCATCT RNU1-60P -0.7260587253 1
## 398 ATAAGAGAGGAGTTGC RNU1-60P 0.0631782510 1
## 399 CATTATCCATGGTCTA RNU1-60P -0.0507779533 0
## 400 CTTAGGAGTGGCGAAT RNU1-60P -0.1122316434 0
## 401 CATCAGAAGCACCGCT RNU1-60P -0.8682214292 0
## 402 GCGGGTTAGTAGCCGA RNU1-60P -0.4740380022 0
## 403 CAGAGAGAGCGCCTTG RNU1-60P 0.1262755997 0
## 404 CTGAAGTCAGACACTT RNU1-60P 0.2272105938 0
## 405 GGACGTCCAGGTGCCT RNU1-60P -1.3581461204 1
## 406 AAAGCAAGTGGTGTAG RNU1-60P -0.5006828450 0
## 407 TCTCATACAGGGCATA RNU1-60P -0.3275054405 0
## 408 AACTCAGGTACTCGCG RNU1-60P -0.1533670460 0
## 409 CACATTTGTGAGTATA RNU1-60P -0.0582186591 0
## 410 ACTTTCAAGGTGTTAA RNU1-60P 0.3765832873 1
## 411 TGCCCATCAGACGCAA RNU1-60P -0.9515628932 0
## 412 CTAAGACCAATGCCAT RNU1-60P 0.6887493643 0
## 413 CGGAGCTCATTTGCTT RNU1-60P 1.0374623904 0
## 414 GAGCAGATCGACGGAA RNU1-60P -0.3454784434 0
## 415 TAAACCGAGATCGATA RNU1-60P 0.6508013946 0
## 416 GTCTCGTGTACATCCA RNU1-60P -1.3884194017 0
## 417 GTATCTTAGACCCACC RNU1-60P -1.0608783580 1
## 418 GAGCAGAAGAGCCTAG RNU1-60P 0.5031068579 1
## 419 GTGCAGCTCACATAGC RNU1-60P 0.7862387096 0
## 420 CCTATTAGTAAACCTC RNU1-60P 0.4321083770 0
## 421 AGAGTGGAGTTTAGGA RNU1-60P 0.8672708195 0
## 422 TACGGGCAGGTGATTA RNU1-60P -0.5132855720 0
## 423 ACTATCTCAATCTACG RNU1-60P -0.7803464335 0
## 424 CGAGCCATCAGGCAAG RNU1-60P -0.5409048318 0
## 425 CGAATGTCAATTGCTG RNU1-60P 0.9737425532 0
## 426 TACGGTATCGTTACGA RNU1-60P 0.9766975348 0
## 427 CTGTGCTCAAGGTGTG RNU1-60P -1.9646121178 0
## 428 CCATGTCGTAACGACG RNU1-60P 0.6659067732 0
## 429 TGCTGCTAGACACTAA RNU1-60P 0.7841917209 0
## 430 ACGGGTCTCGCTTAGA RNU1-60P -0.4414708683 0
## 431 ACGAGGAAGGCTAGCA RNU1-60P 0.4887005952 0
## 432 GCACTCTGTCGGCACT RNU1-60P 1.7512981522 0
## 433 ATCATGGGTTTAAGCC RNU1-60P 0.3210389166 0
## 434 GCATGTAGTAAAGGAG RNU1-60P 0.1411098924 0
## 435 CAACTAGAGTGGGCTA RNU1-60P 0.1549334730 0
## 436 AACACGTCAATCAGAA RNU1-60P -0.2813100306 1
## 437 AAAGTAGGTGTCTGAT RNU1-60P -1.8161066136 1
## 438 CTCATTATCGCTGATA RNU1-60P -0.4334428753 0
## 439 TACTCGCCAACGCACC RNU1-60P -0.6518649639 0
## 440 GGACATTGTCCTGCTT RNU1-60P -1.7954510441 1
## 441 ACTGAACAGAGCTGGT RNU1-60P 0.7288591395 0
## 442 CTCGGGAAGTGCAAGC RNU1-60P 1.2051316403 0
## 443 AGCTCCTAGCATGGCA RNU1-60P 1.1037972242 0
## 444 TATTACCGTCGACTGC RNU1-60P 0.9570335875 0
## 445 GAACGGACATTTCACT RNU1-60P 0.6382594407 0
## 446 CACAAACTCCCGGATG RNU1-60P 1.0238014266 0
## 447 GCTCCTAAGGGAGTAA RNU1-60P -0.6799970560 0
## 448 GACTAACCATCACGTA RNU1-60P -1.8310900392 1
## 449 TACTCGCTCTTAACCT RNU1-60P 0.3574081369 0
## 450 AGGCCGTCAGGAACGT RNU1-60P -1.6861196387 0
## 451 CCACTACAGTGCTGCC RNU1-60P -1.9328183248 0
## 452 ATCCACCCAAGCCGTC RNU1-60P -0.0417071793 0
## 453 GAGTCCGAGACTGTAA RNU1-60P -1.7516040797 0
## 454 AAGCCGCCAGAAGCAC RNU1-60P 0.8476485935 0
## 455 GACACGCCAGATTGCT RNU1-60P -0.7500642082 0
## 456 CGACTTCAGGCTACGA RNU1-60P 1.1554663877 0
## 457 GGGTTGCCAGTAAGCG RNU1-60P 0.2603161975 0
## 458 AGTGAGGGTCAGAATA RNU1-60P -1.7305779776 0
## 459 GATCTAGCAGCCACCA RNU1-60P -1.6717106785 0
## 460 ACGAGGACAAGACGTG RNU1-60P -0.2125449175 0
## 461 CATATGGCAAGCCGCT RNU1-60P 0.2012475866 0
## 462 TTATGCTCAGACGCTC RNU1-60P 1.0803578776 0
## 463 AGTGTCAAGTCGCCGT RNU1-60P 0.2304754393 0
## 464 AAGGCAGGTCTGCCAG RNU1-60P 0.2465882657 0
## 465 TCAGGATAGCCCGAAA RNU1-60P -0.1717044092 0
## 466 CCACTACCACTAGTAC RNU1-60P -0.6069955546 1
## 467 AGCAGCCTCGCCAAAT RNU1-60P -1.7443260778 0
## 468 CTGCCTATCCATGCTC RNU1-60P -0.1615353495 0
## 469 GCTGCAGCATAGTAAG RNU1-60P -0.1354385794 0
## 470 GCGCAGTTCAGTTCGA RNU1-60P -1.7639969417 1
## 471 GGGCATCGTAGCGCTC RNU1-60P 0.0745808826 0
## 472 CTAATGGGTTACGTCA RNU1-60P 0.8858978041 0
## 473 ATTCTACGTTATCGGT RNU1-60P 1.1268656833 0
## 474 GAAATGATCAGCTGGC RNU1-60P -1.7910762756 0
## 475 TGCTACCTCGTCCAGG RNU1-60P -0.1860844622 0
## 476 ACATGGTCACTTACGA RNU1-60P 0.7945391422 0
## 477 ACTTTCAAGCGTTGCC RNU1-60P 0.6338015460 0
## 478 CCTACACGTAAACCTC RNU1-60P 1.0227389077 0
## 479 ATTGGTGAGATCCCAT RNU1-60P -1.8713501143 0
## 480 CCGGGATCACAGACAG RNU1-60P 0.6462591069 0
## 481 CAGTAACTCTCTTGAT RNU1-60P 0.5629867804 0
## 482 ATCTACTCAATAGCGG RNU1-60P 1.0694643410 0
## 483 ACCCACTGTTAAGAAC RNU1-60P -0.0134248278 1
## 484 ACATACGTCTGCTTGC RNU1-60P 0.2936126122 0
## 485 CGTCTACGTTGAACTC RNU1-60P 0.1689398222 0
## 486 ATTATCCCAGCAGTTT RNU1-60P -0.1475797621 0
## 487 GAAACTCTCGTTACGA RNU1-60P 0.9069389427 0
## 488 GATGAAACATCATCCC RNU1-60P -0.5110106755 0
## 489 CACAGTATCTGTCCGT RNU1-60P 0.8967217429 0
## 490 TGAAAGAAGGAGCGAG RNU1-60P -1.6875817552 0
## 491 CCGGTAGAGACCGGAT RNU1-60P -1.7856413654 0
## 492 TGCGGGTTCTAACCGA RNU1-60P -0.2319513190 1
## 493 GGCGACTTCGCGCCAA RNU1-60P 1.1391243719 0
## 494 GGGATGAAGTCGCCGT RNU1-60P 0.5238915408 0
## 495 GATTCAGGTACAGACG RNU1-60P 1.1541911681 0
## 496 TAGACCACAAGAAGAG RNU1-60P 0.5439713665 0
## 497 AATCCAGGTCAGAGGT RNU1-60P -0.6066028584 1
## 498 TGAGCCGCAATGGACG RNU1-60P 1.0500883701 0
## 499 CACATAGGTACTCTCC RNU1-60P 1.3727579829 0
## 500 CATGGCGAGCAATATG RNU1-60P -1.7410906244 1
## 501 CAGTAACGTTATTCTC RNU1-60P -0.4765134117 1
## 502 GCGAGAAGTTCCGTCT RNU1-60P 0.6849032388 0
## 503 TTTACTGGTCCCTTGT RNU1-60P 0.0695819411 1
## 504 ATCATGGCACGAAATA RNU1-60P 0.9264828231 0
## 505 CGCCAAGAGGCAGTCA RNU1-60P -0.4455184344 0
## 506 CGTCCATGTCCAGTAT RNU1-60P 0.5496693882 0
## 507 TGGCGCATCCATTCTA RNU1-60P -0.5889761107 0
## 508 CCCATACGTAGCTTGT RNU1-60P -0.1342399387 0
## 509 GCATGCGGTGCTGTAT RNU1-60P 0.7837218868 0
## 510 TTCTTAGCATGCTAGT RNU1-60P 0.7715439169 0
## 511 TGCGCAGAGTGGACGT RNU1-60P -1.5659499207 1
## 512 ATTATCCGTTGCTCCT RNU1-60P 0.2019808892 0
## 513 AGAATAGAGACTAGGC RNU1-60P 0.1799877437 0
## 514 CCTACACAGCTGCAAG RNU1-60P -0.6045147066 1
## 515 GACAGAGAGTGCTGCC RNU1-60P 0.7124288694 0
## 516 GTTCGGGTCCCAAGAT RNU1-60P 0.4467381739 0
## 517 AGTAGTCGTAAGCACG RNU1-60P 0.1508492713 0
## 518 CTCACACGTACCTACA RNU1-60P 0.6013658703 0
## 519 GCAGTTAAGTGGGTTG RNU1-60P 0.1395360238 0
## 520 GTCAAGTCAGCTCGAC RNU1-60P -0.6767115334 1
## 521 GCTGCGATCCCTAACC RNU1-60P -1.5842023912 1
## 522 GATCGTATCCCTAACC RNU1-60P 1.6574477075 0
## 523 TGAGAGGTCCGTAGTA RNU1-60P 0.5449907519 0
## 524 CTCGTCAGTGCACTTA RNU1-60P 1.0698862883 0
## 525 AGCATACAGCAAATCA RNU1-60P 0.8337151962 0
## 526 TCGGGACGTGTCAATC RNU1-60P 0.4348136066 0
## 527 ATGCGATGTAAACACA RNU1-60P 1.3142725016 0
## 528 CATGACACACAACGTT RNU1-60P 0.2200319794 0
## 529 GCTTGAAGTGCTAGCC RNU1-60P -0.1915361269 0
## 530 TTTGGTTTCTCTTATG RNU1-60P -0.1968757037 0
## 531 ACACCCTGTGAAATCA RNU1-60P -0.5239162159 0
## 532 ATCATGGTCCCTCAGT RNU1-60P 1.9470313325 0
## 533 CCTCTGACAATCAGAA RNU1-60P 0.7187210416 0
## 534 ACATACGAGACACTAA RNU1-60P 1.0149829768 0
## 535 TCACAAGTCCGTAGGC RNU1-60P -1.5254333179 1
## 536 GCAGTTAGTCCAGTGC RNU1-60P -0.5352999364 1
## 537 AGTGAGGGTTACAGAA RNU1-60P -0.3936973717 0
## 538 CACACAAGTAATCACC RNU1-60P 1.7027119156 0
## 539 GATCGCGAGGCTAGAC RNU1-60P 0.9805863018 0
## 540 CTCGTACTCCTTTCGG RNU1-60P -0.0858931547 0
## 541 ATCCACCTCGGCGGTT RNU1-60P -1.5487364356 0
## 542 GAAGCAGAGCTAGTTC RNU1-60P 1.5032175963 0
## 543 CAGTCCTAGTGTCTCA RNU1-60P -1.6610419874 0
## 544 CGCTTCACAATGGATA RNU1-60P 1.0895836339 0
## 545 TCCCGATTCATATCGG RNU1-60P 1.3732952274 0
## 546 TGTGGTACATATACCG RNU1-60P 0.5109422503 0
## 547 TACCTTACACTACAGT RNU1-60P -1.5934896619 1
## 548 GTAGGCCGTCCGTCAG RNU1-60P 0.3283088834 0
## 549 CAGAATCCAATCAGAA RNU1-60P -0.1020189035 0
## 550 GGATTACTCTGTGCAA RNU1-60P -0.5302134289 1
## 551 GTCGTAAGTTTGTTTC RNU1-60P -0.6144366368 0
## 552 GATCGTAAGCCAGTAG RNU1-60P 1.3926000457 0
## 553 GACTACAGTTAAAGAC RNU1-60P 1.4230944210 0
## 554 CATGACACAACACCTA RNU1-60P 1.2317928224 0
## 555 CACCAGGTCACGCGGT RNU1-60P 0.0458004438 0
## 556 GTCTTCGTCTGAGTGT RNU1-60P 0.2805825568 1
## 557 CCTTCGAAGTGGGATC RNU1-60P 1.3219722339 0
## 558 GTGCGGTGTCCTGCTT RNU1-60P 1.4099198538 0
## 559 GTCACAACATGCCTTC RNU1-60P -0.4052622938 1
## 560 CAGAGAGTCAGTCAGT RNU1-60P -0.4737077167 0
## 561 GTGCGGTGTACTCTCC RNU1-60P 0.8576292055 0
## 562 CAGCTAATCAAGATCC RNU1-60P 0.8428769065 1
## 563 CAAGATCGTTGGGACA RNU1-60P 0.5995075032 0
## 564 TTTATGCCATCACAAC RNU1-60P 0.4166411308 0
## 565 CGGTTAATCCCAAGTA RNU1-60P -0.5030225962 0
## 566 TAGCCGGTCCGTAGTA RNU1-60P 0.7129220150 1
## 567 ACGAGCCGTGTTTGTG RNU1-60P 0.6459333817 0
## 568 AGCATACCAAACCCAT RNU1-60P 0.6882014266 0
## 569 GAAATGATCAACACTG RNU1-60P 0.8718556065 0
## 570 TATCTCACATAACCTG RNU1-60P 0.8602604907 0
## 571 CCGTACTCACTTCTGC RNU1-60P -1.5261322639 1
## 572 CTAGAGTTCAGAGGTG RNU1-60P 0.5345906212 0
## 573 CTGATAGCATACAGCT RNU1-60P 1.0141939306 0
## 574 TCGAGGCCACGGTAGA RNU1-60P 0.8025487092 1
## 575 GATCAGTTCACTTATC RNU1-60P 0.9416354811 0
## 576 GTTTCTAAGCCCTAAT RNU1-60P 0.7713873520 0
## 577 CAGCTGGAGGAATTAC RNU1-60P -0.3179112121 1
## 578 AGAGTGGTCGATCCCT RNU1-60P 1.4100474882 0
## 579 CATGGCGCAACTGCTA RNU1-60P 0.7837782171 0
## 580 CTGGTCTGTATATGGA RNU1-60P 0.4753771596 1
## 581 CGTCACTCACAGGAGT RNU1-60P -0.0147427177 0
## 582 AACTGGTTCAACCAAC RNU1-60P -1.5127841192 1
## 583 CCATTCGCAGGGAGAG RNU1-60P 0.6559291312 0
## 584 CATCAGATCTTCAACT RNU1-60P 0.6383859134 0
## 585 GAATGAATCAGGCAAG RNU1-60P 0.7767177971 0
## 586 TGTCCCATCGAATGCT RNU1-60P 0.7161548258 0
## 587 AGTGGGACAGCCAATT RNU1-60P -1.5127303373 0
## 588 AGAGCTTTCACATGCA RNU1-60P 0.1107882003 0
## 589 TGCGGGTTCTGCAGTA RNU1-60P 0.9307054157 0
## 590 GTCGTAAGTCGGCACT RNU1-60P -1.9207439938 0
## 591 CTCGAGGTCGGAGCAA RNU1-60P -1.5900999344 0
## 592 CTACACCAGATGAGAG RNU1-60P -1.4928469268 0
## 593 ACGGCCATCTTACCTA RNU1-60P -0.3773324970 0
## 594 CCCAGTTCACACCGAC RNU1-60P 1.1420954748 1
## 595 TCGGGACTCGGATGGA RNU1-60P 0.7937895945 1
## 596 CATCGGGTCCCGACTT RNU1-60P 1.7719322683 1
## 597 CTTAACTGTAAGGATT RNU1-60P -1.4535481353 0
## 598 AACCATGAGCGTAATA RNU1-60P 0.7427986962 0
## 599 TCAGATGGTCTTCTCG RNU1-60P 0.8858204801 0
## 600 CTCACACTCCCAACGG RNU1-60P 0.2666455329 0
## 601 CCATGTCAGGATGGAA RNU1-60P 1.4190283351 0
## 602 GGGTCTGGTACTTGAC RNU1-60P 0.6652479524 0
## 603 GGAACTTCACAGTCGC RNU1-60P 1.0840912464 0
## 604 GACCTGGCACATCCAA RNU1-60P -0.4314171574 0
## 605 CAGTCCTCAAGACACG RNU1-60P 0.5447274906 1
## 606 AGATCTGCATATGGTC RNU1-60P 0.8298141117 0
## 607 CATCAGAGTATTCTCT RNU1-60P 0.9958458992 0
## 608 TGCACCTTCGATAGAA RNU1-60P 0.8368704179 0
## 609 CCTACACTCCCAAGTA RNU1-60P 0.6022849185 0
## 610 ACTTTCATCGTAGATC RNU1-60P -0.4999001734 1
## 611 TTGCGTCCACCATGTA RNU1-60P -0.3481979547 0
## 612 AAATGCCAGGTGCTAG RNU1-60P 0.2152249494 0
## 613 ATGCGATGTCCATCCT RNU1-60P -1.5049175118 1
## 614 CCAGCGAAGCCACTAT RNU1-60P 0.2141775213 0
## 615 TACTTGTAGTGTACTC RNU1-60P 0.0967977412 0
## 616 AGGGATGTCTCGCTTG RNU1-60P -0.2776277941 1
## 617 TGTCCCAGTATTAGCC RNU1-60P 0.1643979789 0
## 618 TGCTACCTCGCACTCT RNU1-60P 1.0466941421 0
## 619 GTAACGTCAGTATAAG RNU1-60P -1.4638627557 1
## 620 GCGCAACGTTCGTTGA RNU1-60P -1.4577653051 1
## 621 GCGAGAACATGAGCGA RNU1-60P -1.4989973861 1
## 622 TGCCCTAGTGCACCAC RNU1-60P -0.3485032874 1
## 623 CTAGAGTGTAAACACA RNU1-60P 1.7889002198 0
## 624 AGTAGTCCACCGGAAA RNU1-60P 0.8723397088 0
## 625 CATATTCTCAGCGATT RNU1-60P -0.1488906783 0
## 626 GAATGAAGTAACGACG RNU1-60P -0.4015459717 0
## 627 GATCAGTAGTACTTGC RNU1-60P -0.3475375202 0
## 628 CAAGAAACAGGATTGG RNU1-60P -1.5172009838 1
## 629 CCTATTATCAACACTG RNU1-60P 0.0350334569 0
## 630 CAGCAGCTCTGCGGCA RNU1-60P -1.5493693287 0
## 631 ATAAGAGAGCTGCGAA RNU1-60P 0.1468041168 0
## 632 AGATCTGCACCTATCC RNU1-60P -0.2575791380 0
## 633 GACACGCGTAGAGCTG RNU1-60P -0.3562551049 0
## 634 TACACGAAGCTAGGCA RNU1-60P -1.4870586921 0
## 635 AACACGTTCCGAAGAG RNU1-60P 0.0552134053 0
## 636 TTAACTCGTGTAATGA RNU1-60P -1.5807809731 1
## 637 TGGCGCAGTTCAGACT RNU1-60P 1.2256154309 0
## 638 CATCAGAGTCTAGTCA RNU1-60P -0.2774974665 1
## 639 CTAGAGTAGCATGGCA RNU1-60P 0.3502699927 0
## 640 TACGGTAAGCGTGAAC RNU1-60P -1.5936953710 0
## 641 TGACTTTTCGGATGTT RNU1-60P -0.2162506936 1
## 642 CTCACACTCCTACAGA RNU1-60P -1.5116430315 0
## 643 CCGTACTCACTGAAGG RNU1-60P 1.2144614676 0
## 644 ATAACGCGTGGAAAGA RNU1-60P 1.3082817246 0
## 645 GCTTGAAAGCTAGGCA RNU1-60P -1.6127281908 1
## 646 AAGTCTGGTGTTGGGA RNU1-60P -0.2943335494 0
## 647 CGATCGGGTACAGCAG RNU1-60P 0.9819241040 0
## 648 AGTAGTCTCGATGAGG RNU1-60P 0.1231636647 0
## 649 CGACCTTCAGACGCTC RNU1-60P 0.1317797726 1
## 650 GCATACACATGCAACT RNU1-60P -1.4778879250 0
## 651 TCCCGATTCGCAGGCT RNU1-60P -1.6025048797 0
## 652 TTAGGCAAGATCGATA RNU1-60P -1.5116884865 1
## 653 TCGTACCAGGCAAAGA RNU1-60P 0.4999638851 0
## 654 GGATGTTGTATAGGGC RNU1-60P 0.9530517605 0
## 655 AATCCAGCAGAGTGTG RNU1-60P 1.7600451629 0
## 656 CATGCCTCACGGCCAT RNU1-60P -0.1983684092 1
## 657 CTCGAAACACATGACT RNU1-60P 0.6979035945 0
## 658 CTGCCTAGTTGCGTTA RNU1-60P 1.2177562803 0
## 659 GGCGACTAGACAGAGA RNU1-60P 0.7551503576 1
## 660 TACAGTGGTGTAATGA RNU1-60P -0.2564414941 1
## 661 ACGAGCCTCTTATCTG RNU1-60P 0.6706317358 0
## 662 GGGAATGCAAATACAG RNU1-60P -1.4682263247 1
## 663 TGCACCTGTACCGAGA RNU1-60P 0.8293237317 0
## 664 ATCATCTTCAGTCAGT RNU1-60P 0.2782145888 0
## 665 CATATTCGTACAGTTC RNU1-60P 0.6667425865 0
## 666 GCATGATGTTCCACTC RNU1-60P 0.2595854486 0
## 667 AAGGCAGTCACGACTA RNU1-60P 0.9066110112 0
## 668 GAAACTCTCTATCCCG RNU1-60P -1.5366957657 0
## 669 AGCATACTCTGCTGTC RNU1-60P 0.5008075872 1
## 670 TGGGCGTCAGCGTTCG RNU1-60P 1.1976753920 1
## 671 TCGTAGAGTTCGTCTC RNU1-60P 0.9332388507 0
## 672 GACAGAGGTACCGCTG RNU1-60P -1.3950833453 1
## 673 TCTCATACACATAACC RNU1-60P -0.2962121544 0
## 674 TGGGCGTCATTGAGCT RNU1-60P 0.4506042408 0
## 675 CATGACACATGTCTCC RNU1-60P 1.0704551160 0
## 676 GAATAAGGTGCACGAA RNU1-60P -1.4458782719 1
## 677 TGCGCAGCAAGCGAGT RNU1-60P 1.2905867842 0
## 678 CTTCTCTCAGCCAGAA RNU1-60P 1.1496302465 0
## 679 AAGCCGCAGTGGCACA RNU1-60P -1.3896341973 0
## 680 CTCTACGAGTGGACGT RNU1-60P -1.4827426547 0
## 681 GTCATTTTCTATCCCG RNU1-60P -1.4393253564 0
## 682 CGAGCACAGCCACTAT RNU1-60P -1.4404641657 1
## 683 AGTAGTCGTAACGACG RNU1-60P 0.9114897748 0
## 684 GACGTGCAGAGGGATA RNU1-60P 0.2646249677 0
## 685 GTCTTCGTCCAACCAA RNU1-60P -0.3355295954 0
## 686 CAAGGCCTCGCCCTTA RNU1-60P 1.3878428901 0
## 687 TGTGGTACATGGTTGT RNU1-60P -0.2358871871 0
## 688 CCTCAGTTCGAATGCT RNU1-60P -1.3250940519 1
## 689 ACCGTAATCTGAGGGA RNU1-60P -1.3958154246 1
## 690 GTTAAGCCAGTTCATG RNU1-60P 0.2453809449 0
## 691 CTGCCTATCAATCTCT RNU1-60P -1.4281287641 0
## 692 GACGGCTTCTCCAACC RNU1-60P -1.4014101954 0
## 693 TTTCCTCCAGTTCCCT RNU1-60P 0.9453499418 0
## 694 GCGCCAAAGCCCTAAT RNU1-60P 0.6427472868 0
## 695 CCACCTATCCCGACTT RNU1-60P 0.2989518596 1
## 696 TTTATGCCAGGGCATA RNU1-60P 0.5260888808 1
## 697 TACAGTGTCGCGGATC RNU1-60P -1.4416142846 1
## 698 AGCTCTCCACCACGTG RNU1-60P 0.4854691645 0
## 699 GTGGGTCCATTGAGCT RNU1-60P -1.5476834443 1
## 700 GGGATGACAGACTCGC RNU1-60P 0.7708676823 0
## 701 ACACCAAGTTCGGGCT RNU1-60P -0.3501285694 1
## 702 TGATTTCAGCTATGCT RNU1-60P -1.4368809708 1
## 703 TGGCCAGAGAGGGCTT RNU1-60P -0.3013660253 0
## 704 TCGGTAAGTAAAGTCA RNU1-60P 0.9574681347 0
## 705 TGAAAGAGTCCCTTGT RNU1-60P -1.3795838128 1
## 706 CCGTGGATCGTTTATC RNU1-60P -0.0104880386 1
## 707 GAACCTATCCTCAACC RNU1-60P 0.2035087599 0
## 708 GCGCAGTCATCCAACA RNU1-60P -0.2249627906 1
## 709 ACATGGTTCGCGCCAA RNU1-60P -0.2035249875 1
## 710 CTTGGCTGTACGCACC RNU1-60P 0.3198540493 0
## 711 AGATTGCAGGCCCGTT RNU1-60P 0.4652148838 0
## 712 AGGCCGTGTTACGGAG RNU1-60P -0.3914906148 1
## 713 GGTGTTAGTTAAGATG RNU1-60P 1.1818110667 0
## 714 GGAATAATCCTGTAGA RNU1-60P -1.3820326368 1
## 715 TATTACCGTATTAGCC RNU1-60P -1.4357073655 1
## 716 ATAACGCGTTAGTGGG RNU1-60P -0.2136822011 0
## 717 AAACGGGGTTATCCGA RNU1-60P -1.4045628853 0
## 718 TGTGGTATCGTTTAGG RNU1-60P -1.3350947796 1
## 719 ATCACGAGTATGAATG RNU1-60P 0.3255186596 1
## 720 CAGCAGCTCACCTCGT RNU1-60P 1.8331983120 0
## 721 CCAATCCGTATTACCG RNU1-60P -0.1583490248 1
## 722 TTCTACATCACATAGC RNU1-60P 0.4224682411 0
## 723 TGTCCCATCGTATCAG RNU1-60P -1.5288364260 0
## 724 AGCTCTCAGTGTTTGC RNU1-60P 0.6845905955 0
## 725 CAACCTCAGTAACCCT RNU1-60P -0.2799855676 0
## 726 GTGGGTCAGGTAAACT RNU1-60P 0.4288187967 0
## 727 TAAGTGCCACGTCAGC RNU1-60P -0.2932996370 1
## 728 GACCTGGCAGCCACCA RNU1-60P 1.6995789573 0
## 729 ACAGCCGCAGGATCGA RNU1-60P 0.7926558454 0
## 730 AACTCCCCAGCTCGCA RNU1-60P 0.5285553155 0
## 731 GGAAAGCGTCTCTCGT RNU1-60P 1.3597830761 0
## 732 CGCTTCAAGCAGGTCA RNU1-60P 0.9140570933 1
## 733 GATCGCGAGAAGGGTA RNU1-60P -1.4087252394 1
## 734 AAGCCGCCAGGATTGG RNU1-60P -1.4433885409 1
## 735 ATTGGACGTCGTGGCT RNU1-60P 1.1031755452 0
## 736 CCCATACCACTAAGTC RNU1-60P -1.3079159989 0
## 737 TCTCTAATCCCATTTA RNU1-60P 0.7918870643 1
## 738 TCGTAGAGTGGTACAG RNU1-60P -0.3022269780 1
## 739 AAACGGGAGAGACGAA RNU1-60P 1.2329974758 0
## 740 GACTACATCACCACCT RNU1-60P -1.3598908337 0
## 741 GAAACTCAGTTGAGTA RNU1-60P -0.0888510534 0
## 742 CCCTCCTTCCTCCTAG RNU1-60P 0.2254905026 1
## 743 GCGACCATCACGGTTA RNU1-60P -0.1121988027 0
## 744 TCTCTAAAGAGTCGGT RNU1-60P -1.5700704096 1
## 745 GGCTCGATCTCACATT RNU1-60P -0.4885423633 0
## 746 CTGATAGAGGCAGGTT RNU1-60P -1.5778947469 1
## 747 CATGCCTAGGAGTTTA RNU1-60P -1.5775825100 1
## 748 TGGCTGGTCAGCCTAA RNU1-60P 0.7151188101 0
## 749 TCAGATGTCGTTACAG RNU1-60P 0.6138833428 0
## 750 CAGCTGGGTTATGTGC RNU1-60P -0.1742770304 0
## 751 GGAACTTAGTCGTACT RNU1-60P 2.1427936511 0
## 752 CCGGGATCACCGGAAA RNU1-60P 1.6941373605 1
## 753 CCTTCGATCAAAGACA RNU1-60P 1.1946354684 0
## 754 CGAGAAGGTATCGCAT RNU1-60P -1.4027811811 1
## 755 CCTAAAGAGACTGGGT RNU1-60P 0.8747426804 0
## 756 CAGATCACATTGGCGC RNU1-60P -0.1599634619 1
## 757 CTAGCCTAGCTGGAAC RNU1-60P -1.6078571902 1
## 758 ATTGGTGTCTCGTATT RNU1-60P -1.3011835463 0
## 759 GGGAATGTCAAAGTAG RNU1-60P -1.4683321261 1
## 760 CCATGTCCACGGCCAT RNU1-60P -0.1978834812 0
## 761 GGCAATTCATATGGTC RNU1-60P -0.3445379924 0
## 762 CTGTGCTCATGTCCTC RNU1-60P -1.5265482981 0
## 763 TTAACTCCAACGCACC RNU1-60P 0.4062747770 0
## 764 CGAACATAGCGGCTTC RNU1-60P 1.9891978594 0
## 765 TCGCGTTAGGCACATG RNU1-60P -1.4108931287 1
## 766 GGGTTGCCAAACTGCT RNU1-60P 1.4806238441 0
## 767 ATAAGAGCAGGTGCCT RNU1-60P -1.4750247427 1
## 768 CGGACACGTATTCGTG RNU1-60P -1.2135102213 0
## 769 CTGATAGTCACGACTA RNU1-60P -0.3234535125 0
## 770 GAACATCGTGAGTATA RNU1-60P 0.6538633132 0
## 771 TGCTACCAGTGGTCCC RNU1-60P 0.6215196778 0
## 772 GCTGGGTAGTCTTGCA RNU1-60P 1.2669176429 0
## 773 TACGGATGTCTAACGT RNU1-60P 0.7910400430 0
## 774 TGGGCGTCAATGGATA RNU1-60P -0.1390053076 1
## 775 CTGCTGTCATTTGCTT RNU1-60P 0.4387862307 0
## 776 GGGCATCAGCAGCCTC RNU1-60P -1.5914468890 1
## 777 CGTGAGCAGACTAGAT RNU1-60P 1.0828235834 0
## 778 CAGCGACCACACCGAC RNU1-60P -1.3083727464 0
## 779 CCCAATCCAGTTAACC RNU1-60P -1.3703488613 0
## 780 CAGCGACTCAGCGACC RNU1-60P -0.1494925305 0
## 781 GAGCAGAAGCTATGCT RNU1-60P -1.3630596527 0
## 782 CTCTGGTTCACTTCAT RNU1-60P -0.5413996454 0
## 783 CGCGTTTCAGCTGTGC RNU1-60P -1.4498516640 1
## 784 GGACGTCCACCTCGGA RNU1-60P 1.2879837415 0
## 785 TAGTTGGAGAGTTGGC RNU1-60P 0.3480466865 0
## 786 ATTGGTGTCGGAATCT RNU1-60P 0.9796699938 0
## 787 GAATGAACACGGCCAT RNU1-60P -1.4055419554 0
## 788 GTGCATACAAGGTGTG RNU1-60P 0.1585531948 0
## 789 GGAATAAGTCGGCACT RNU1-60P -0.0126130793 0
## 790 ACCCACTTCCAAAGTC RNU1-60P 1.6477917894 0
## 791 ACTATCTCAATTCCTT RNU1-60P -0.0703790377 1
## 792 AGCATACAGTGGGATC RNU1-60P 0.8055534611 0
## 793 GTCATTTTCCGCATCT RNVU1-14 -0.2720149373 1
## 794 ATAAGAGAGGAGTTGC RNVU1-14 -0.2821396805 1
## 795 CATTATCCATGGTCTA RNVU1-14 0.0168137133 0
## 796 CTTAGGAGTGGCGAAT RNVU1-14 -0.6261407348 0
## 797 CATCAGAAGCACCGCT RNVU1-14 -0.0763736741 0
## 798 GCGGGTTAGTAGCCGA RNVU1-14 0.0460114511 0
## 799 CAGAGAGAGCGCCTTG RNVU1-14 -1.6690792411 0
## 800 CTGAAGTCAGACACTT RNVU1-14 1.6421127749 0
## 801 GGACGTCCAGGTGCCT RNVU1-14 0.4663102010 1
## 802 AAAGCAAGTGGTGTAG RNVU1-14 -1.4410417550 0
## 803 TCTCATACAGGGCATA RNVU1-14 0.1561720647 0
## 804 AACTCAGGTACTCGCG RNVU1-14 0.7827247888 0
## 805 CACATTTGTGAGTATA RNVU1-14 -1.3484593105 0
## 806 ACTTTCAAGGTGTTAA RNVU1-14 -1.4638077241 1
## 807 TGCCCATCAGACGCAA RNVU1-14 1.0838526917 0
## 808 CTAAGACCAATGCCAT RNVU1-14 -0.3150367918 0
## 809 CGGAGCTCATTTGCTT RNVU1-14 1.1238996117 0
## 810 GAGCAGATCGACGGAA RNVU1-14 -0.2279752749 0
## 811 TAAACCGAGATCGATA RNVU1-14 0.3832295817 0
## 812 GTCTCGTGTACATCCA RNVU1-14 0.4417028589 0
## 813 GTATCTTAGACCCACC RNVU1-14 -1.3737125100 1
## 814 GAGCAGAAGAGCCTAG RNVU1-14 -1.3534381255 1
## 815 GTGCAGCTCACATAGC RNVU1-14 1.5272631860 0
## 816 CCTATTAGTAAACCTC RNVU1-14 0.4809843092 0
## 817 AGAGTGGAGTTTAGGA RNVU1-14 -0.0783696152 0
## 818 TACGGGCAGGTGATTA RNVU1-14 -1.3385175193 0
## 819 ACTATCTCAATCTACG RNVU1-14 0.9698337294 0
## 820 CGAGCCATCAGGCAAG RNVU1-14 0.4081624100 0
## 821 CGAATGTCAATTGCTG RNVU1-14 0.6270305289 0
## 822 TACGGTATCGTTACGA RNVU1-14 -1.2773342156 0
## 823 CTGTGCTCAAGGTGTG RNVU1-14 -1.3080141381 0
## 824 CCATGTCGTAACGACG RNVU1-14 0.4751046929 0
## 825 TGCTGCTAGACACTAA RNVU1-14 0.9852957833 0
## 826 ACGGGTCTCGCTTAGA RNVU1-14 -0.0703279002 0
## 827 ACGAGGAAGGCTAGCA RNVU1-14 0.4291561466 0
## 828 GCACTCTGTCGGCACT RNVU1-14 2.1786820826 0
## 829 ATCATGGGTTTAAGCC RNVU1-14 0.8764653862 0
## 830 GCATGTAGTAAAGGAG RNVU1-14 1.0264754562 0
## 831 CAACTAGAGTGGGCTA RNVU1-14 -0.0299459316 0
## 832 AACACGTCAATCAGAA RNVU1-14 1.4800278739 1
## 833 AAAGTAGGTGTCTGAT RNVU1-14 -1.2075584240 1
## 834 CTCATTATCGCTGATA RNVU1-14 0.8815885714 0
## 835 TACTCGCCAACGCACC RNVU1-14 0.6984686055 0
## 836 GGACATTGTCCTGCTT RNVU1-14 -1.1954692854 1
## 837 ACTGAACAGAGCTGGT RNVU1-14 0.9839198929 0
## 838 CTCGGGAAGTGCAAGC RNVU1-14 -0.0008100777 0
## 839 AGCTCCTAGCATGGCA RNVU1-14 1.1843638981 0
## 840 TATTACCGTCGACTGC RNVU1-14 1.4450459004 0
## 841 GAACGGACATTTCACT RNVU1-14 0.7632422248 0
## 842 CACAAACTCCCGGATG RNVU1-14 0.0981318453 0
## 843 GCTCCTAAGGGAGTAA RNVU1-14 -1.1626939462 0
## 844 GACTAACCATCACGTA RNVU1-14 -1.2200535846 1
## 845 TACTCGCTCTTAACCT RNVU1-14 0.1148791715 0
## 846 AGGCCGTCAGGAACGT RNVU1-14 -1.1223387999 0
## 847 CCACTACAGTGCTGCC RNVU1-14 -1.2921484445 0
## 848 ATCCACCCAAGCCGTC RNVU1-14 -1.0922866908 0
## 849 GAGTCCGAGACTGTAA RNVU1-14 -1.1699872011 0
## 850 AAGCCGCCAGAAGCAC RNVU1-14 0.1297241619 0
## 851 GACACGCCAGATTGCT RNVU1-14 -1.2285651764 0
## 852 CGACTTCAGGCTACGA RNVU1-14 1.0694373601 0
## 853 GGGTTGCCAGTAAGCG RNVU1-14 0.9857567541 0
## 854 AGTGAGGGTCAGAATA RNVU1-14 -1.1564410777 0
## 855 GATCTAGCAGCCACCA RNVU1-14 0.1837309106 0
## 856 ACGAGGACAAGACGTG RNVU1-14 1.3320486388 0
## 857 CATATGGCAAGCCGCT RNVU1-14 0.9439560292 0
## 858 TTATGCTCAGACGCTC RNVU1-14 0.7071507405 0
## 859 AGTGTCAAGTCGCCGT RNVU1-14 -1.1236568270 0
## 860 AAGGCAGGTCTGCCAG RNVU1-14 0.7905956631 0
## 861 TCAGGATAGCCCGAAA RNVU1-14 -1.1759649854 0
## 862 CCACTACCACTAGTAC RNVU1-14 -1.1273645191 1
## 863 AGCAGCCTCGCCAAAT RNVU1-14 -1.1644963055 0
## 864 CTGCCTATCCATGCTC RNVU1-14 -1.1723828089 0
## 865 GCTGCAGCATAGTAAG RNVU1-14 0.7290671199 0
## 866 GCGCAGTTCAGTTCGA RNVU1-14 -1.1784874723 1
## 867 GGGCATCGTAGCGCTC RNVU1-14 0.0798326591 0
## 868 CTAATGGGTTACGTCA RNVU1-14 0.1556423586 0
## 869 ATTCTACGTTATCGGT RNVU1-14 1.1121770829 0
## 870 GAAATGATCAGCTGGC RNVU1-14 1.0248618435 0
## 871 TGCTACCTCGTCCAGG RNVU1-14 0.1205689900 0
## 872 ACATGGTCACTTACGA RNVU1-14 0.1853456635 0
## 873 ACTTTCAAGCGTTGCC RNVU1-14 1.1323465698 0
## 874 CCTACACGTAAACCTC RNVU1-14 1.1236540609 0
## 875 ATTGGTGAGATCCCAT RNVU1-14 0.5864324999 0
## 876 CCGGGATCACAGACAG RNVU1-14 -1.1311125929 0
## 877 CAGTAACTCTCTTGAT RNVU1-14 -1.0764774352 0
## 878 ATCTACTCAATAGCGG RNVU1-14 -1.1510287401 0
## 879 ACCCACTGTTAAGAAC RNVU1-14 -1.0850803607 1
## 880 ACATACGTCTGCTTGC RNVU1-14 0.8314326942 0
## 881 CGTCTACGTTGAACTC RNVU1-14 -0.0185067103 0
## 882 ATTATCCCAGCAGTTT RNVU1-14 0.7311074783 0
## 883 GAAACTCTCGTTACGA RNVU1-14 0.6619827027 0
## 884 GATGAAACATCATCCC RNVU1-14 -1.0992398847 0
## 885 CACAGTATCTGTCCGT RNVU1-14 0.7544287685 0
## 886 TGAAAGAAGGAGCGAG RNVU1-14 0.2020952673 0
## 887 CCGGTAGAGACCGGAT RNVU1-14 -1.1887957528 0
## 888 TGCGGGTTCTAACCGA RNVU1-14 -1.2072236216 1
## 889 GGCGACTTCGCGCCAA RNVU1-14 0.2611952677 0
## 890 GGGATGAAGTCGCCGT RNVU1-14 0.2403085743 0
## 891 GATTCAGGTACAGACG RNVU1-14 -1.1641728486 0
## 892 TAGACCACAAGAAGAG RNVU1-14 1.5636454382 0
## 893 AATCCAGGTCAGAGGT RNVU1-14 -1.1366676370 1
## 894 TGAGCCGCAATGGACG RNVU1-14 -1.1981268320 0
## 895 CACATAGGTACTCTCC RNVU1-14 0.7552686990 0
## 896 CATGGCGAGCAATATG RNVU1-14 -1.1632138588 1
## 897 CAGTAACGTTATTCTC RNVU1-14 0.2836402514 1
## 898 GCGAGAAGTTCCGTCT RNVU1-14 -1.1778346355 0
## 899 TTTACTGGTCCCTTGT RNVU1-14 -1.2069803736 1
## 900 ATCATGGCACGAAATA RNVU1-14 1.8309617145 0
## 901 CGCCAAGAGGCAGTCA RNVU1-14 1.5357863272 0
## 902 CGTCCATGTCCAGTAT RNVU1-14 -1.0980274541 0
## 903 TGGCGCATCCATTCTA RNVU1-14 1.1508010541 0
## 904 CCCATACGTAGCTTGT RNVU1-14 0.4873271700 0
## 905 GCATGCGGTGCTGTAT RNVU1-14 0.0843164807 0
## 906 TTCTTAGCATGCTAGT RNVU1-14 -1.2174005265 0
## 907 TGCGCAGAGTGGACGT RNVU1-14 -1.0446597998 1
## 908 ATTATCCGTTGCTCCT RNVU1-14 -1.0117649492 0
## 909 AGAATAGAGACTAGGC RNVU1-14 1.6030562255 0
## 910 CCTACACAGCTGCAAG RNVU1-14 -1.1341575343 1
## 911 GACAGAGAGTGCTGCC RNVU1-14 -1.1012007859 0
## 912 GTTCGGGTCCCAAGAT RNVU1-14 0.1890405846 0
## 913 AGTAGTCGTAAGCACG RNVU1-14 -1.1715447949 0
## 914 CTCACACGTACCTACA RNVU1-14 1.2541917763 0
## 915 GCAGTTAAGTGGGTTG RNVU1-14 0.7191507315 0
## 916 GTCAAGTCAGCTCGAC RNVU1-14 -1.2001003995 1
## 917 GCTGCGATCCCTAACC RNVU1-14 0.8477663457 1
## 918 GATCGTATCCCTAACC RNVU1-14 0.8149154921 0
## 919 TGAGAGGTCCGTAGTA RNVU1-14 0.2539389158 0
## 920 CTCGTCAGTGCACTTA RNVU1-14 -1.1334328231 0
## 921 AGCATACAGCAAATCA RNVU1-14 0.2165725721 0
## 922 TCGGGACGTGTCAATC RNVU1-14 -1.1352248451 0
## 923 ATGCGATGTAAACACA RNVU1-14 0.1285168058 0
## 924 CATGACACACAACGTT RNVU1-14 0.7886667787 0
## 925 GCTTGAAGTGCTAGCC RNVU1-14 0.7124940194 0
## 926 TTTGGTTTCTCTTATG RNVU1-14 0.6851195829 0
## 927 ACACCCTGTGAAATCA RNVU1-14 0.2574310008 0
## 928 ATCATGGTCCCTCAGT RNVU1-14 1.1904539293 0
## 929 CCTCTGACAATCAGAA RNVU1-14 0.9780274347 0
## 930 ACATACGAGACACTAA RNVU1-14 0.4600213625 0
## 931 TCACAAGTCCGTAGGC RNVU1-14 0.3500525772 1
## 932 GCAGTTAGTCCAGTGC RNVU1-14 -1.1110559659 1
## 933 AGTGAGGGTTACAGAA RNVU1-14 -1.0524053560 0
## 934 CACACAAGTAATCACC RNVU1-14 1.4570611910 0
## 935 GATCGCGAGGCTAGAC RNVU1-14 0.8183638438 0
## 936 CTCGTACTCCTTTCGG RNVU1-14 1.1742019034 0
## 937 ATCCACCTCGGCGGTT RNVU1-14 -1.0402321318 0
## 938 GAAGCAGAGCTAGTTC RNVU1-14 -1.0192871965 0
## 939 CAGTCCTAGTGTCTCA RNVU1-14 -1.1141933169 0
## 940 CGCTTCACAATGGATA RNVU1-14 -1.1374732309 0
## 941 TCCCGATTCATATCGG RNVU1-14 0.1705338965 0
## 942 TGTGGTACATATACCG RNVU1-14 0.8206819804 0
## 943 TACCTTACACTACAGT RNVU1-14 -1.0642140052 1
## 944 GTAGGCCGTCCGTCAG RNVU1-14 0.8567452560 0
## 945 CAGAATCCAATCAGAA RNVU1-14 0.1871505320 0
## 946 GGATTACTCTGTGCAA RNVU1-14 -1.1054185166 1
## 947 GTCGTAAGTTTGTTTC RNVU1-14 0.7529761445 0
## 948 GATCGTAAGCCAGTAG RNVU1-14 0.8894318315 0
## 949 GACTACAGTTAAAGAC RNVU1-14 1.2893196386 0
## 950 CATGACACAACACCTA RNVU1-14 1.1135538904 0
## 951 CACCAGGTCACGCGGT RNVU1-14 0.3054776752 0
## 952 GTCTTCGTCTGAGTGT RNVU1-14 0.2433360952 1
## 953 CCTTCGAAGTGGGATC RNVU1-14 -1.0123041917 0
## 954 GTGCGGTGTCCTGCTT RNVU1-14 1.6410574180 0
## 955 GTCACAACATGCCTTC RNVU1-14 -1.0467713632 1
## 956 CAGAGAGTCAGTCAGT RNVU1-14 0.8591447493 0
## 957 GTGCGGTGTACTCTCC RNVU1-14 -1.1137316322 0
## 958 CAGCTAATCAAGATCC RNVU1-14 -1.0423005213 1
## 959 CAAGATCGTTGGGACA RNVU1-14 0.8785205131 0
## 960 TTTATGCCATCACAAC RNVU1-14 -1.0528518480 0
## 961 CGGTTAATCCCAAGTA RNVU1-14 0.2488167271 0
## 962 TAGCCGGTCCGTAGTA RNVU1-14 -1.0229516365 1
## 963 ACGAGCCGTGTTTGTG RNVU1-14 0.7807390396 0
## 964 AGCATACCAAACCCAT RNVU1-14 0.8124621207 0
## 965 GAAATGATCAACACTG RNVU1-14 -1.0381574621 0
## 966 TATCTCACATAACCTG RNVU1-14 0.2391153794 0
## 967 CCGTACTCACTTCTGC RNVU1-14 -1.0243064005 1
## 968 CTAGAGTTCAGAGGTG RNVU1-14 1.2155706151 0
## 969 CTGATAGCATACAGCT RNVU1-14 0.2530108336 0
## 970 TCGAGGCCACGGTAGA RNVU1-14 0.9039410312 1
## 971 GATCAGTTCACTTATC RNVU1-14 0.1168995982 0
## 972 GTTTCTAAGCCCTAAT RNVU1-14 0.7526115517 0
## 973 CAGCTGGAGGAATTAC RNVU1-14 -0.9945082275 1
## 974 AGAGTGGTCGATCCCT RNVU1-14 1.6294359505 0
## 975 CATGGCGCAACTGCTA RNVU1-14 0.1821547133 0
## 976 CTGGTCTGTATATGGA RNVU1-14 -1.0122644136 1
## 977 CGTCACTCACAGGAGT RNVU1-14 -1.1047228551 0
## 978 AACTGGTTCAACCAAC RNVU1-14 -1.0118816436 1
## 979 CCATTCGCAGGGAGAG RNVU1-14 0.9403004620 0
## 980 CATCAGATCTTCAACT RNVU1-14 1.8017969497 0
## 981 GAATGAATCAGGCAAG RNVU1-14 0.1782867373 0
## 982 TGTCCCATCGAATGCT RNVU1-14 -1.0107414835 0
## 983 AGTGGGACAGCCAATT RNVU1-14 0.3919338316 0
## 984 AGAGCTTTCACATGCA RNVU1-14 1.8319307814 0
## 985 TGCGGGTTCTGCAGTA RNVU1-14 1.6597443627 0
## 986 GTCGTAAGTCGGCACT RNVU1-14 0.6016387131 0
## 987 CTCGAGGTCGGAGCAA RNVU1-14 0.9159522097 0
## 988 CTACACCAGATGAGAG RNVU1-14 1.0280089118 0
## 989 ACGGCCATCTTACCTA RNVU1-14 0.3586289851 0
## 990 CCCAGTTCACACCGAC RNVU1-14 -0.9720655590 1
## 991 TCGGGACTCGGATGGA RNVU1-14 0.4476947861 1
## 992 CATCGGGTCCCGACTT RNVU1-14 1.9572371018 1
## 993 CTTAACTGTAAGGATT RNVU1-14 1.0559904246 0
## 994 AACCATGAGCGTAATA RNVU1-14 1.8862090659 0
## 995 TCAGATGGTCTTCTCG RNVU1-14 0.3726675517 0
## 996 CTCACACTCCCAACGG RNVU1-14 -0.9785159843 0
## 997 CCATGTCAGGATGGAA RNVU1-14 0.9198909084 0
## 998 GGGTCTGGTACTTGAC RNVU1-14 -1.0433598262 0
## 999 GGAACTTCACAGTCGC RNVU1-14 1.6604827333 0
## 1000 GACCTGGCACATCCAA RNVU1-14 1.5778074046 0
## 1001 CAGTCCTCAAGACACG RNVU1-14 -1.0016298278 1
## 1002 AGATCTGCATATGGTC RNVU1-14 0.3353912969 0
## 1003 CATCAGAGTATTCTCT RNVU1-14 1.7144310295 0
## 1004 TGCACCTTCGATAGAA RNVU1-14 2.5000000000 0
## 1005 CCTACACTCCCAAGTA RNVU1-14 0.2998846900 0
## 1006 ACTTTCATCGTAGATC RNVU1-14 -1.1058489589 1
## 1007 TTGCGTCCACCATGTA RNVU1-14 0.9687167310 0
## 1008 AAATGCCAGGTGCTAG RNVU1-14 0.1909732838 0
## 1009 ATGCGATGTCCATCCT RNVU1-14 -1.0092774458 1
## 1010 CCAGCGAAGCCACTAT RNVU1-14 1.6942754466 0
## 1011 TACTTGTAGTGTACTC RNVU1-14 0.9173865382 0
## 1012 AGGGATGTCTCGCTTG RNVU1-14 0.4397335840 1
## 1013 TGTCCCAGTATTAGCC RNVU1-14 -1.0017440291 0
## 1014 TGCTACCTCGCACTCT RNVU1-14 1.0822596906 0
## 1015 GTAACGTCAGTATAAG RNVU1-14 -0.9794977781 1
## 1016 GCGCAACGTTCGTTGA RNVU1-14 -0.9760767827 1
## 1017 GCGAGAACATGAGCGA RNVU1-14 -1.0044755478 1
## 1018 TGCCCTAGTGCACCAC RNVU1-14 -1.0258548114 1
## 1019 CTAGAGTGTAAACACA RNVU1-14 0.4293721587 0
## 1020 AGTAGTCCACCGGAAA RNVU1-14 -1.0522093516 0
## 1021 CATATTCTCAGCGATT RNVU1-14 -0.9128437967 0
## 1022 GAATGAAGTAACGACG RNVU1-14 -1.0788237593 0
## 1023 GATCAGTAGTACTTGC RNVU1-14 -1.0346317591 0
## 1024 CAAGAAACAGGATTGG RNVU1-14 -1.0185129271 1
## 1025 CCTATTATCAACACTG RNVU1-14 0.8771826455 0
## 1026 CAGCAGCTCTGCGGCA RNVU1-14 -1.0408572968 0
## 1027 ATAAGAGAGCTGCGAA RNVU1-14 -1.0195044869 0
## 1028 AGATCTGCACCTATCC RNVU1-14 1.7100360254 0
## 1029 GACACGCGTAGAGCTG RNVU1-14 -1.0356101845 0
## 1030 TACACGAAGCTAGGCA RNVU1-14 -0.9967805676 0
## 1031 AACACGTTCCGAAGAG RNVU1-14 0.3072485135 0
## 1032 TTAACTCGTGTAATGA RNVU1-14 -1.0573702754 1
## 1033 TGGCGCAGTTCAGACT RNVU1-14 0.3271891798 0
## 1034 CATCAGAGTCTAGTCA RNVU1-14 -0.9823156027 1
## 1035 CTAGAGTAGCATGGCA RNVU1-14 -0.9120040291 0
## 1036 TACGGTAAGCGTGAAC RNVU1-14 -1.0724850391 0
## 1037 TGACTTTTCGGATGTT RNVU1-14 -0.9596478708 1
## 1038 CTCACACTCCTACAGA RNVU1-14 -1.0143679749 0
## 1039 CCGTACTCACTGAAGG RNVU1-14 1.4147943006 0
## 1040 ATAACGCGTGGAAAGA RNVU1-14 0.8212649684 0
## 1041 GCTTGAAAGCTAGGCA RNVU1-14 -1.0813186253 1
## 1042 AAGTCTGGTGTTGGGA RNVU1-14 -0.9944568870 0
## 1043 CGATCGGGTACAGCAG RNVU1-14 0.4445988531 0
## 1044 AGTAGTCTCGATGAGG RNVU1-14 -1.0538124481 0
## 1045 CGACCTTCAGACGCTC RNVU1-14 -1.0226717461 1
## 1046 GCATACACATGCAACT RNVU1-14 0.4693123346 0
## 1047 TCCCGATTCGCAGGCT RNVU1-14 -1.0798162644 0
## 1048 TTAGGCAAGATCGATA RNVU1-14 -1.0092792308 1
## 1049 TCGTACCAGGCAAAGA RNVU1-14 0.9936183464 0
## 1050 GGATGTTGTATAGGGC RNVU1-14 -0.9811133483 0
## 1051 AATCCAGCAGAGTGTG RNVU1-14 1.6706488679 0
## 1052 CATGCCTCACGGCCAT RNVU1-14 0.5098602331 1
## 1053 CTCGAAACACATGACT RNVU1-14 1.8206109774 0
## 1054 CTGCCTAGTTGCGTTA RNVU1-14 -0.9608163699 0
## 1055 GGCGACTAGACAGAGA RNVU1-14 0.4209651034 1
## 1056 TACAGTGGTGTAATGA RNVU1-14 -0.9882771825 1
## 1057 ACGAGCCTCTTATCTG RNVU1-14 1.3418690861 0
## 1058 GGGAATGCAAATACAG RNVU1-14 -0.9864300433 1
## 1059 TGCACCTGTACCGAGA RNVU1-14 -0.9603098933 0
## 1060 ATCATCTTCAGTCAGT RNVU1-14 -0.9710061229 0
## 1061 CATATTCGTACAGTTC RNVU1-14 0.5252984243 0
## 1062 GCATGATGTTCCACTC RNVU1-14 -0.9703396791 0
## 1063 AAGGCAGTCACGACTA RNVU1-14 0.9938548592 0
## 1064 GAAACTCTCTATCCCG RNVU1-14 0.3938367918 0
## 1065 AGCATACTCTGCTGTC RNVU1-14 -1.0204511320 1
## 1066 TGGGCGTCAGCGTTCG RNVU1-14 -1.0633715715 1
## 1067 TCGTAGAGTTCGTCTC RNVU1-14 1.9558236494 0
## 1068 GACAGAGGTACCGCTG RNVU1-14 0.5316613890 1
## 1069 TCTCATACACATAACC RNVU1-14 0.9991377746 0
## 1070 TGGGCGTCATTGAGCT RNVU1-14 -1.0811951882 0
## 1071 CATGACACATGTCTCC RNVU1-14 1.3652604810 0
## 1072 GAATAAGGTGCACGAA RNVU1-14 0.4483833902 1
## 1073 TGCGCAGCAAGCGAGT RNVU1-14 1.2773507366 0
## 1074 CTTCTCTCAGCCAGAA RNVU1-14 1.3301829510 0
## 1075 AAGCCGCAGTGGCACA RNVU1-14 1.5212462307 0
## 1076 CTCTACGAGTGGACGT RNVU1-14 -0.9979588521 0
## 1077 GTCATTTTCTATCCCG RNVU1-14 -0.9667421701 0
## 1078 CGAGCACAGCCACTAT RNVU1-14 0.5142306830 1
## 1079 AGTAGTCGTAACGACG RNVU1-14 1.5184069832 0
## 1080 GACGTGCAGAGGGATA RNVU1-14 1.1974130776 0
## 1081 GTCTTCGTCCAACCAA RNVU1-14 0.3922174008 0
## 1082 CAAGGCCTCGCCCTTA RNVU1-14 0.4468765664 0
## 1083 TGTGGTACATGGTTGT RNVU1-14 -1.0058808455 0
## 1084 CCTCAGTTCGAATGCT RNVU1-14 0.5726344661 1
## 1085 ACCGTAATCTGAGGGA RNVU1-14 -0.9379452957 1
## 1086 GTTAAGCCAGTTCATG RNVU1-14 1.0458494648 0
## 1087 CTGCCTATCAATCTCT RNVU1-14 -0.9583624646 0
## 1088 GACGGCTTCTCCAACC RNVU1-14 -0.9398344841 0
## 1089 TTTCCTCCAGTTCCCT RNVU1-14 0.4147145289 0
## 1090 GCGCCAAAGCCCTAAT RNVU1-14 1.8161753557 0
## 1091 CCACCTATCCCGACTT RNVU1-14 0.4999526812 1
## 1092 TTTATGCCAGGGCATA RNVU1-14 0.4254179858 1
## 1093 TACAGTGTCGCGGATC RNVU1-14 -0.9701559293 1
## 1094 AGCTCTCCACCACGTG RNVU1-14 0.4002021253 0
## 1095 GTGGGTCCATTGAGCT RNVU1-14 -1.0398054452 1
## 1096 GGGATGACAGACTCGC RNVU1-14 0.4331515233 0
## 1097 ACACCAAGTTCGGGCT RNVU1-14 -1.0500843756 1
## 1098 TGATTTCAGCTATGCT RNVU1-14 -0.9636091800 1
## 1099 TGGCCAGAGAGGGCTT RNVU1-14 -1.0022848174 0
## 1100 TCGGTAAGTAAAGTCA RNVU1-14 1.4041556939 0
## 1101 TGAAAGAGTCCCTTGT RNVU1-14 -0.9241613251 1
## 1102 CCGTGGATCGTTTATC RNVU1-14 0.6499224793 1
## 1103 GAACCTATCCTCAACC RNVU1-14 1.0215873864 0
## 1104 GCGCAGTCATCCAACA RNVU1-14 -0.9786081252 1
## 1105 ACATGGTTCGCGCCAA RNVU1-14 -0.9496437991 1
## 1106 CTTGGCTGTACGCACC RNVU1-14 0.2713894465 0
## 1107 AGATTGCAGGCCCGTT RNVU1-14 0.9709426069 0
## 1108 AGGCCGTGTTACGGAG RNVU1-14 -1.0931216412 1
## 1109 GGTGTTAGTTAAGATG RNVU1-14 1.1934736369 0
## 1110 GGAATAATCCTGTAGA RNVU1-14 -0.9257089220 1
## 1111 TATTACCGTATTAGCC RNVU1-14 0.5155630346 1
## 1112 ATAACGCGTTAGTGGG RNVU1-14 1.0977517831 0
## 1113 AAACGGGGTTATCCGA RNVU1-14 0.5538070144 0
## 1114 TGTGGTATCGTTTAGG RNVU1-14 0.5756539153 1
## 1115 ATCACGAGTATGAATG RNVU1-14 -0.9913658896 1
## 1116 CAGCAGCTCACCTCGT RNVU1-14 2.1820940070 0
## 1117 CCAATCCGTATTACCG RNVU1-14 -0.9358341243 1
## 1118 TTCTACATCACATAGC RNVU1-14 -0.9229386137 0
## 1119 TGTCCCATCGTATCAG RNVU1-14 -1.0300531037 0
## 1120 AGCTCTCAGTGTTTGC RNVU1-14 -1.0799575858 0
## 1121 CAACCTCAGTAACCCT RNVU1-14 -1.0149937788 0
## 1122 GTGGGTCAGGTAAACT RNVU1-14 -1.0810406301 0
## 1123 TAAGTGCCACGTCAGC RNVU1-14 -1.0396264295 1
## 1124 GACCTGGCAGCCACCA RNVU1-14 1.3937686298 0
## 1125 ACAGCCGCAGGATCGA RNVU1-14 0.4440762960 0
## 1126 AACTCCCCAGCTCGCA RNVU1-14 0.4312713096 0
## 1127 GGAAAGCGTCTCTCGT RNVU1-14 0.2774854107 0
## 1128 CGCTTCAAGCAGGTCA RNVU1-14 -0.9362292401 1
## 1129 GATCGCGAGAAGGGTA RNVU1-14 0.5312582912 1
## 1130 AAGCCGCCAGGATTGG RNVU1-14 -0.9700017187 1
## 1131 ATTGGACGTCGTGGCT RNVU1-14 1.0196272810 0
## 1132 CCCATACCACTAAGTC RNVU1-14 0.6292759232 0
## 1133 TCTCTAATCCCATTTA RNVU1-14 0.6187475782 1
## 1134 TCGTAGAGTGGTACAG RNVU1-14 0.4195681765 1
## 1135 AAACGGGAGAGACGAA RNVU1-14 1.1096617955 0
## 1136 GACTACATCACCACCT RNVU1-14 -0.9124361273 0
## 1137 GAAACTCAGTTGAGTA RNVU1-14 1.2010566071 0
## 1138 CCCTCCTTCCTCCTAG RNVU1-14 -0.9768726282 1
## 1139 GCGACCATCACGGTTA RNVU1-14 -0.9873730816 0
## 1140 TCTCTAAAGAGTCGGT RNVU1-14 -1.0521161924 1
## 1141 GGCTCGATCTCACATT RNVU1-14 -1.1293944460 0
## 1142 CTGATAGAGGCAGGTT RNVU1-14 -1.0622785490 1
## 1143 CATGCCTAGGAGTTTA RNVU1-14 -1.0607606342 1
## 1144 TGGCTGGTCAGCCTAA RNVU1-14 -0.9342816628 0
## 1145 TCAGATGTCGTTACAG RNVU1-14 1.0852409444 0
## 1146 CAGCTGGGTTATGTGC RNVU1-14 0.5333853107 0
## 1147 GGAACTTAGTCGTACT RNVU1-14 -0.9318640303 0
## 1148 CCGGGATCACCGGAAA RNVU1-14 0.5231825219 1
## 1149 CCTTCGATCAAAGACA RNVU1-14 -0.9785253703 0
## 1150 CGAGAAGGTATCGCAT RNVU1-14 -0.9411409325 1
## 1151 CCTAAAGAGACTGGGT RNVU1-14 0.2531924314 0
## 1152 CAGATCACATTGGCGC RNVU1-14 -0.9507995611 1
## 1153 CTAGCCTAGCTGGAAC RNVU1-14 0.3982654262 1
## 1154 ATTGGTGTCTCGTATT RNVU1-14 -0.8730403451 0
## 1155 GGGAATGTCAAAGTAG RNVU1-14 -0.9867231607 1
## 1156 CCATGTCCACGGCCAT RNVU1-14 -0.9634429928 0
## 1157 GGCAATTCATATGGTC RNVU1-14 0.3989678131 0
## 1158 CTGTGCTCATGTCCTC RNVU1-14 0.4092699223 0
## 1159 TTAACTCCAACGCACC RNVU1-14 0.5809320195 0
## 1160 CGAACATAGCGGCTTC RNVU1-14 1.5217047744 0
## 1161 TCGCGTTAGGCACATG RNVU1-14 -0.9433070647 1
## 1162 GGGTTGCCAAACTGCT RNVU1-14 0.6008803428 0
## 1163 ATAAGAGCAGGTGCCT RNVU1-14 -0.9906417435 1
## 1164 CGGACACGTATTCGTG RNVU1-14 -0.8162435413 0
## 1165 CTGATAGTCACGACTA RNVU1-14 0.4177378311 0
## 1166 GAACATCGTGAGTATA RNVU1-14 -0.9431218146 0
## 1167 TGCTACCAGTGGTCCC RNVU1-14 1.4876191670 0
## 1168 GCTGGGTAGTCTTGCA RNVU1-14 1.1396437406 0
## 1169 TACGGATGTCTAACGT RNVU1-14 0.6176657359 0
## 1170 TGGGCGTCAATGGATA RNVU1-14 -0.9047156279 1
## 1171 CTGCTGTCATTTGCTT RNVU1-14 -0.9223590430 0
## 1172 GGGCATCAGCAGCCTC RNVU1-14 -1.0737295854 1
## 1173 CGTGAGCAGACTAGAT RNVU1-14 1.6718666055 0
## 1174 CAGCGACCACACCGAC RNVU1-14 -0.8794159300 0
## 1175 CCCAATCCAGTTAACC RNVU1-14 0.5587642061 0
## 1176 CAGCGACTCAGCGACC RNVU1-14 0.5360504674 0
## 1177 GAGCAGAAGCTATGCT RNVU1-14 -0.9151087102 0
## 1178 CTCTGGTTCACTTCAT RNVU1-14 0.2284512466 0
## 1179 CGCGTTTCAGCTGTGC RNVU1-14 -0.9724091215 1
## 1180 GGACGTCCACCTCGGA RNVU1-14 1.0621716318 0
## 1181 TAGTTGGAGAGTTGGC RNVU1-14 -0.9485846147 0
## 1182 ATTGGTGTCGGAATCT RNVU1-14 0.4436199944 0
## 1183 GAATGAACACGGCCAT RNVU1-14 -0.9447301036 0
## 1184 GTGCATACAAGGTGTG RNVU1-14 -1.0548835488 0
## 1185 GGAATAAGTCGGCACT RNVU1-14 -0.8458936382 0
## 1186 ACCCACTTCCAAAGTC RNVU1-14 0.3214310684 0
## 1187 ACTATCTCAATTCCTT RNVU1-14 -0.9056619340 1
## 1188 AGCATACAGTGGGATC RNVU1-14 1.2505832734 0
## 1189 GTCATTTTCCGCATCT S100A12 -0.3836295345 1
## 1190 ATAAGAGAGGAGTTGC S100A12 -0.5822733413 1
## 1191 CATTATCCATGGTCTA S100A12 -0.0761682439 0
## 1192 CTTAGGAGTGGCGAAT S100A12 0.4311986440 0
## 1193 CATCAGAAGCACCGCT S100A12 -0.5815279883 0
## 1194 GCGGGTTAGTAGCCGA S100A12 -0.3105448463 0
## 1195 CAGAGAGAGCGCCTTG S100A12 0.0835765051 0
## 1196 CTGAAGTCAGACACTT S100A12 0.5425348570 0
## 1197 GGACGTCCAGGTGCCT S100A12 -1.2724389699 1
## 1198 AAAGCAAGTGGTGTAG S100A12 -0.3115610274 0
## 1199 TCTCATACAGGGCATA S100A12 0.3302176610 0
## 1200 AACTCAGGTACTCGCG S100A12 0.5661121767 0
## 1201 CACATTTGTGAGTATA S100A12 0.5774490508 0
## 1202 ACTTTCAAGGTGTTAA S100A12 0.2116482593 1
## 1203 TGCCCATCAGACGCAA S100A12 -0.4138326638 0
## 1204 CTAAGACCAATGCCAT S100A12 0.4155210307 0
## 1205 CGGAGCTCATTTGCTT S100A12 0.7370931387 0
## 1206 GAGCAGATCGACGGAA S100A12 0.3218048360 0
## 1207 TAAACCGAGATCGATA S100A12 0.7174282195 0
## 1208 GTCTCGTGTACATCCA S100A12 -0.8216424370 0
## 1209 GTATCTTAGACCCACC S100A12 -0.6406390474 1
## 1210 GAGCAGAAGAGCCTAG S100A12 -2.0592544649 1
## 1211 GTGCAGCTCACATAGC S100A12 -0.0636797435 0
## 1212 CCTATTAGTAAACCTC S100A12 0.3929299961 0
## 1213 AGAGTGGAGTTTAGGA S100A12 0.9229806454 0
## 1214 TACGGGCAGGTGATTA S100A12 -2.2067580897 0
## 1215 ACTATCTCAATCTACG S100A12 -0.8434262735 0
## 1216 CGAGCCATCAGGCAAG S100A12 0.9767657655 0
## 1217 CGAATGTCAATTGCTG S100A12 0.7771981806 0
## 1218 TACGGTATCGTTACGA S100A12 1.3432158898 0
## 1219 CTGTGCTCAAGGTGTG S100A12 -0.1501816234 0
## 1220 CCATGTCGTAACGACG S100A12 0.1320563080 0
## 1221 TGCTGCTAGACACTAA S100A12 1.1487810287 0
## 1222 ACGGGTCTCGCTTAGA S100A12 0.0989038153 0
## 1223 ACGAGGAAGGCTAGCA S100A12 0.4094970191 0
## 1224 GCACTCTGTCGGCACT S100A12 -0.7229374540 0
## 1225 ATCATGGGTTTAAGCC S100A12 1.2100552754 0
## 1226 GCATGTAGTAAAGGAG S100A12 -2.3071041058 0
## 1227 CAACTAGAGTGGGCTA S100A12 0.7805244585 0
## 1228 AACACGTCAATCAGAA S100A12 -0.7965019204 1
## 1229 AAAGTAGGTGTCTGAT S100A12 -0.7428072330 1
## 1230 CTCATTATCGCTGATA S100A12 -0.4284465448 0
## 1231 TACTCGCCAACGCACC S100A12 -0.6528269630 0
## 1232 GGACATTGTCCTGCTT S100A12 -0.7458041335 1
## 1233 ACTGAACAGAGCTGGT S100A12 1.3713535346 0
## 1234 CTCGGGAAGTGCAAGC S100A12 0.4069018050 0
## 1235 AGCTCCTAGCATGGCA S100A12 0.1946653779 0
## 1236 TATTACCGTCGACTGC S100A12 -0.6422290828 0
## 1237 GAACGGACATTTCACT S100A12 -1.8433939263 0
## 1238 CACAAACTCCCGGATG S100A12 0.4389493412 0
## 1239 GCTCCTAAGGGAGTAA S100A12 -1.8255311293 0
## 1240 GACTAACCATCACGTA S100A12 -1.9634499254 1
## 1241 TACTCGCTCTTAACCT S100A12 -1.8491005425 0
## 1242 AGGCCGTCAGGAACGT S100A12 -0.5752387605 0
## 1243 CCACTACAGTGCTGCC S100A12 0.0546015088 0
## 1244 ATCCACCCAAGCCGTC S100A12 -0.5408525814 0
## 1245 GAGTCCGAGACTGTAA S100A12 -0.2276329152 0
## 1246 AAGCCGCCAGAAGCAC S100A12 0.9187948450 0
## 1247 GACACGCCAGATTGCT S100A12 -0.9069145957 0
## 1248 CGACTTCAGGCTACGA S100A12 -1.8110460638 0
## 1249 GGGTTGCCAGTAAGCG S100A12 -0.3159088473 0
## 1250 AGTGAGGGTCAGAATA S100A12 -0.7310798002 0
## 1251 GATCTAGCAGCCACCA S100A12 -0.5728305572 0
## 1252 ACGAGGACAAGACGTG S100A12 0.7901200559 0
## 1253 CATATGGCAAGCCGCT S100A12 0.3619334378 0
## 1254 TTATGCTCAGACGCTC S100A12 0.5336148446 0
## 1255 AGTGTCAAGTCGCCGT S100A12 0.2345576742 0
## 1256 AAGGCAGGTCTGCCAG S100A12 1.8809218978 0
## 1257 TCAGGATAGCCCGAAA S100A12 -1.9749971781 0
## 1258 CCACTACCACTAGTAC S100A12 -1.7784538048 1
## 1259 AGCAGCCTCGCCAAAT S100A12 0.9031493903 0
## 1260 CTGCCTATCCATGCTC S100A12 0.3502820580 0
## 1261 GCTGCAGCATAGTAAG S100A12 0.2262267164 0
## 1262 GCGCAGTTCAGTTCGA S100A12 0.3443290873 1
## 1263 GGGCATCGTAGCGCTC S100A12 -0.7768762456 0
## 1264 CTAATGGGTTACGTCA S100A12 1.1456591652 0
## 1265 ATTCTACGTTATCGGT S100A12 1.6361662243 0
## 1266 GAAATGATCAGCTGGC S100A12 1.1818834482 0
## 1267 TGCTACCTCGTCCAGG S100A12 -0.2245775770 0
## 1268 ACATGGTCACTTACGA S100A12 1.0568859960 0
## 1269 ACTTTCAAGCGTTGCC S100A12 0.2460720257 0
## 1270 CCTACACGTAAACCTC S100A12 -0.1283424693 0
## 1271 ATTGGTGAGATCCCAT S100A12 0.1861229433 0
## 1272 CCGGGATCACAGACAG S100A12 0.4607571865 0
## 1273 CAGTAACTCTCTTGAT S100A12 0.5996812424 0
## 1274 ATCTACTCAATAGCGG S100A12 1.5555196409 0
## 1275 ACCCACTGTTAAGAAC S100A12 -0.5440872919 1
## 1276 ACATACGTCTGCTTGC S100A12 0.4798249804 0
## 1277 CGTCTACGTTGAACTC S100A12 -0.9922123256 0
## 1278 ATTATCCCAGCAGTTT S100A12 -0.2397744637 0
## 1279 GAAACTCTCGTTACGA S100A12 1.3452579861 0
## 1280 GATGAAACATCATCCC S100A12 -0.0694855790 0
## 1281 CACAGTATCTGTCCGT S100A12 0.9262000847 0
## 1282 TGAAAGAAGGAGCGAG S100A12 0.6654177805 0
## 1283 CCGGTAGAGACCGGAT S100A12 -0.2099717645 0
## 1284 TGCGGGTTCTAACCGA S100A12 -2.0328877871 1
## 1285 GGCGACTTCGCGCCAA S100A12 0.4801693925 0
## 1286 GGGATGAAGTCGCCGT S100A12 0.7286712718 0
## 1287 GATTCAGGTACAGACG S100A12 0.6062749010 0
## 1288 TAGACCACAAGAAGAG S100A12 -0.2348512875 0
## 1289 AATCCAGGTCAGAGGT S100A12 -0.1240767940 1
## 1290 TGAGCCGCAATGGACG S100A12 -0.8601726559 0
## 1291 CACATAGGTACTCTCC S100A12 -0.2748663225 0
## 1292 CATGGCGAGCAATATG S100A12 -0.7425114165 1
## 1293 CAGTAACGTTATTCTC S100A12 -1.9280746447 1
## 1294 GCGAGAAGTTCCGTCT S100A12 1.3953107377 0
## 1295 TTTACTGGTCCCTTGT S100A12 -0.3080665916 1
## 1296 ATCATGGCACGAAATA S100A12 0.7799182873 0
## 1297 CGCCAAGAGGCAGTCA S100A12 -0.4919084091 0
## 1298 CGTCCATGTCCAGTAT S100A12 -0.0835129986 0
## 1299 TGGCGCATCCATTCTA S100A12 1.5532860080 0
## 1300 CCCATACGTAGCTTGT S100A12 -0.1340471827 0
## 1301 GCATGCGGTGCTGTAT S100A12 -0.8050675063 0
## 1302 TTCTTAGCATGCTAGT S100A12 -0.0115036354 0
## 1303 TGCGCAGAGTGGACGT S100A12 -0.4373802460 1
## 1304 ATTATCCGTTGCTCCT S100A12 0.0932825178 0
## 1305 AGAATAGAGACTAGGC S100A12 -0.6516638591 0
## 1306 CCTACACAGCTGCAAG S100A12 -0.6403480780 1
## 1307 GACAGAGAGTGCTGCC S100A12 0.8979406554 0
## 1308 GTTCGGGTCCCAAGAT S100A12 -2.0592311792 0
## 1309 AGTAGTCGTAAGCACG S100A12 0.3571840159 0
## 1310 CTCACACGTACCTACA S100A12 0.6775209559 0
## 1311 GCAGTTAAGTGGGTTG S100A12 0.7280422122 0
## 1312 GTCAAGTCAGCTCGAC S100A12 -2.0844733998 1
## 1313 GCTGCGATCCCTAACC S100A12 -0.4405442218 1
## 1314 GATCGTATCCCTAACC S100A12 1.1521786873 0
## 1315 TGAGAGGTCCGTAGTA S100A12 -0.5364364411 0
## 1316 CTCGTCAGTGCACTTA S100A12 -0.1678428909 0
## 1317 AGCATACAGCAAATCA S100A12 -0.0986314571 0
## 1318 TCGGGACGTGTCAATC S100A12 0.2140677986 0
## 1319 ATGCGATGTAAACACA S100A12 0.3501711006 0
## 1320 CATGACACACAACGTT S100A12 -0.3577691544 0
## 1321 GCTTGAAGTGCTAGCC S100A12 -0.0956843242 0
## 1322 TTTGGTTTCTCTTATG S100A12 0.1109204054 0
## 1323 ACACCCTGTGAAATCA S100A12 0.3212973526 0
## 1324 ATCATGGTCCCTCAGT S100A12 1.3643982133 0
## 1325 CCTCTGACAATCAGAA S100A12 1.0889130462 0
## 1326 ACATACGAGACACTAA S100A12 -1.4592828761 0
## 1327 TCACAAGTCCGTAGGC S100A12 -0.3942809799 1
## 1328 GCAGTTAGTCCAGTGC S100A12 0.7059378859 1
## 1329 AGTGAGGGTTACAGAA S100A12 0.0089789316 0
## 1330 CACACAAGTAATCACC S100A12 1.4818247682 0
## 1331 GATCGCGAGGCTAGAC S100A12 1.0310934898 0
## 1332 CTCGTACTCCTTTCGG S100A12 0.0443120070 0
## 1333 ATCCACCTCGGCGGTT S100A12 -1.8492404854 0
## 1334 GAAGCAGAGCTAGTTC S100A12 0.4514081453 0
## 1335 CAGTCCTAGTGTCTCA S100A12 1.1967749074 0
## 1336 CGCTTCACAATGGATA S100A12 0.1394710809 0
## 1337 TCCCGATTCATATCGG S100A12 0.1774479318 0
## 1338 TGTGGTACATATACCG S100A12 0.9360956842 0
## 1339 TACCTTACACTACAGT S100A12 0.6305237779 1
## 1340 GTAGGCCGTCCGTCAG S100A12 0.9106100170 0
## 1341 CAGAATCCAATCAGAA S100A12 0.1527653542 0
## 1342 GGATTACTCTGTGCAA S100A12 -1.8273321023 1
## 1343 GTCGTAAGTTTGTTTC S100A12 0.5498974556 0
## 1344 GATCGTAAGCCAGTAG S100A12 1.6127557563 0
## 1345 GACTACAGTTAAAGAC S100A12 0.0479260753 0
## 1346 CATGACACAACACCTA S100A12 -1.6123395727 0
## 1347 CACCAGGTCACGCGGT S100A12 0.4834577532 0
## 1348 GTCTTCGTCTGAGTGT S100A12 -0.7923297812 1
## 1349 CCTTCGAAGTGGGATC S100A12 0.4686870826 0
## 1350 GTGCGGTGTCCTGCTT S100A12 0.8745024240 0
## 1351 GTCACAACATGCCTTC S100A12 -0.4891690120 1
## 1352 CAGAGAGTCAGTCAGT S100A12 0.7858885702 0
## 1353 GTGCGGTGTACTCTCC S100A12 1.2342057945 0
## 1354 CAGCTAATCAAGATCC S100A12 0.4048605915 1
## 1355 CAAGATCGTTGGGACA S100A12 2.0611786303 0
## 1356 TTTATGCCATCACAAC S100A12 0.0145833355 0
## 1357 CGGTTAATCCCAAGTA S100A12 -0.5488453935 0
## 1358 TAGCCGGTCCGTAGTA S100A12 -1.7376933486 1
## 1359 ACGAGCCGTGTTTGTG S100A12 -0.7806486488 0
## 1360 AGCATACCAAACCCAT S100A12 0.4152581958 0
## 1361 GAAATGATCAACACTG S100A12 0.3971939418 0
## 1362 TATCTCACATAACCTG S100A12 -0.6895430315 0
## 1363 CCGTACTCACTTCTGC S100A12 0.0577719740 1
## 1364 CTAGAGTTCAGAGGTG S100A12 -0.1328258973 0
## 1365 CTGATAGCATACAGCT S100A12 1.8169751510 0
## 1366 TCGAGGCCACGGTAGA S100A12 -0.6268710067 1
## 1367 GATCAGTTCACTTATC S100A12 0.4917179760 0
## 1368 GTTTCTAAGCCCTAAT S100A12 1.2356718406 0
## 1369 CAGCTGGAGGAATTAC S100A12 -1.6197861978 1
## 1370 AGAGTGGTCGATCCCT S100A12 0.9759278420 0
## 1371 CATGGCGCAACTGCTA S100A12 2.0874752855 0
## 1372 CTGGTCTGTATATGGA S100A12 0.4824178549 1
## 1373 CGTCACTCACAGGAGT S100A12 -0.1025352714 0
## 1374 AACTGGTTCAACCAAC S100A12 -0.4040813172 1
## 1375 CCATTCGCAGGGAGAG S100A12 -0.6222580173 0
## 1376 CATCAGATCTTCAACT S100A12 0.3400878976 0
## 1377 GAATGAATCAGGCAAG S100A12 0.3467838327 0
## 1378 TGTCCCATCGAATGCT S100A12 0.4848202034 0
## 1379 AGTGGGACAGCCAATT S100A12 1.0981523227 0
## 1380 AGAGCTTTCACATGCA S100A12 0.5938529041 0
## 1381 TGCGGGTTCTGCAGTA S100A12 0.9474991489 0
## 1382 GTCGTAAGTCGGCACT S100A12 0.3767758826 0
## 1383 CTCGAGGTCGGAGCAA S100A12 0.3241851614 0
## 1384 CTACACCAGATGAGAG S100A12 -0.4200102472 0
## 1385 ACGGCCATCTTACCTA S100A12 0.8367134486 0
## 1386 CCCAGTTCACACCGAC S100A12 -1.6067178025 1
## 1387 TCGGGACTCGGATGGA S100A12 0.0931268003 1
## 1388 CATCGGGTCCCGACTT S100A12 0.7517502500 1
## 1389 CTTAACTGTAAGGATT S100A12 0.2058864701 0
## 1390 AACCATGAGCGTAATA S100A12 0.4669918188 0
## 1391 TCAGATGGTCTTCTCG S100A12 1.4035974355 0
## 1392 CTCACACTCCCAACGG S100A12 0.5282359883 0
## 1393 CCATGTCAGGATGGAA S100A12 1.1399859166 0
## 1394 GGGTCTGGTACTTGAC S100A12 -0.4947576360 0
## 1395 GGAACTTCACAGTCGC S100A12 -0.4310107436 0
## 1396 GACCTGGCACATCCAA S100A12 -1.9243639577 0
## 1397 CAGTCCTCAAGACACG S100A12 -0.4275772068 1
## 1398 AGATCTGCATATGGTC S100A12 -0.6490273670 0
## 1399 CATCAGAGTATTCTCT S100A12 0.5461644642 0
## 1400 TGCACCTTCGATAGAA S100A12 0.9755287887 0
## 1401 CCTACACTCCCAAGTA S100A12 0.7809934701 0
## 1402 ACTTTCATCGTAGATC S100A12 -1.9023220449 1
## 1403 TTGCGTCCACCATGTA S100A12 -1.7193299346 0
## 1404 AAATGCCAGGTGCTAG S100A12 0.7117142092 0
## 1405 ATGCGATGTCCATCCT S100A12 -0.4380480694 1
## 1406 CCAGCGAAGCCACTAT S100A12 -0.4362911571 0
## 1407 TACTTGTAGTGTACTC S100A12 -0.4205547985 0
## 1408 AGGGATGTCTCGCTTG S100A12 -0.4206636375 1
## 1409 TGTCCCAGTATTAGCC S100A12 1.1484168667 0
## 1410 TGCTACCTCGCACTCT S100A12 0.3258827982 0
## 1411 GTAACGTCAGTATAAG S100A12 0.5600054365 1
## 1412 GCGCAACGTTCGTTGA S100A12 -1.6314768030 1
## 1413 GCGAGAACATGAGCGA S100A12 0.1295110334 1
## 1414 TGCCCTAGTGCACCAC S100A12 0.4291166998 1
## 1415 CTAGAGTGTAAACACA S100A12 -0.5562234893 0
## 1416 AGTAGTCCACCGGAAA S100A12 0.3390002261 0
## 1417 CATATTCTCAGCGATT S100A12 0.3794560073 0
## 1418 GAATGAAGTAACGACG S100A12 0.7092424750 0
## 1419 GATCAGTAGTACTTGC S100A12 -0.5047298805 0
## 1420 CAAGAAACAGGATTGG S100A12 0.4198693599 1
## 1421 CCTATTATCAACACTG S100A12 -0.0359499496 0
## 1422 CAGCAGCTCTGCGGCA S100A12 0.9859439131 0
## 1423 ATAAGAGAGCTGCGAA S100A12 -1.7013754636 0
## 1424 AGATCTGCACCTATCC S100A12 1.3303809117 0
## 1425 GACACGCGTAGAGCTG S100A12 1.0233035641 0
## 1426 TACACGAAGCTAGGCA S100A12 0.4942297499 0
## 1427 AACACGTTCCGAAGAG S100A12 1.2110994163 0
## 1428 TTAACTCGTGTAATGA S100A12 -1.7670489884 1
## 1429 TGGCGCAGTTCAGACT S100A12 -0.0940287829 0
## 1430 CATCAGAGTCTAGTCA S100A12 -1.6333065951 1
## 1431 CTAGAGTAGCATGGCA S100A12 -0.1602756781 0
## 1432 TACGGTAAGCGTGAAC S100A12 -1.9727682040 0
## 1433 TGACTTTTCGGATGTT S100A12 -0.3083131556 1
## 1434 CTCACACTCCTACAGA S100A12 0.4358383588 0
## 1435 CCGTACTCACTGAAGG S100A12 1.0641452472 0
## 1436 ATAACGCGTGGAAAGA S100A12 0.5342292539 0
## 1437 GCTTGAAAGCTAGGCA S100A12 -1.8847946013 1
## 1438 AAGTCTGGTGTTGGGA S100A12 0.5123221338 0
## 1439 CGATCGGGTACAGCAG S100A12 -1.7222104170 0
## 1440 AGTAGTCTCGATGAGG S100A12 -0.5590108690 0
## 1441 CGACCTTCAGACGCTC S100A12 -1.6905163953 1
## 1442 GCATACACATGCAACT S100A12 1.1082066611 0
## 1443 TCCCGATTCGCAGGCT S100A12 -0.1382398630 0
## 1444 TTAGGCAAGATCGATA S100A12 -0.3680194040 1
## 1445 TCGTACCAGGCAAAGA S100A12 0.7261619939 0
## 1446 GGATGTTGTATAGGGC S100A12 0.2202078680 0
## 1447 AATCCAGCAGAGTGTG S100A12 1.5678263604 0
## 1448 CATGCCTCACGGCCAT S100A12 -1.7440945033 1
## 1449 CTCGAAACACATGACT S100A12 0.3426378995 0
## 1450 CTGCCTAGTTGCGTTA S100A12 1.3467307066 0
## 1451 GGCGACTAGACAGAGA S100A12 0.3627560321 1
## 1452 TACAGTGGTGTAATGA S100A12 0.1521866013 1
## 1453 ACGAGCCTCTTATCTG S100A12 -0.6728776559 0
## 1454 GGGAATGCAAATACAG S100A12 0.4944537794 1
## 1455 TGCACCTGTACCGAGA S100A12 0.6018044189 0
## 1456 ATCATCTTCAGTCAGT S100A12 0.8082875503 0
## 1457 CATATTCGTACAGTTC S100A12 0.6708148642 0
## 1458 GCATGATGTTCCACTC S100A12 0.8257895851 0
## 1459 AAGGCAGTCACGACTA S100A12 0.7614788256 0
## 1460 GAAACTCTCTATCCCG S100A12 1.7613130859 0
## 1461 AGCATACTCTGCTGTC S100A12 0.4259082090 1
## 1462 TGGGCGTCAGCGTTCG S100A12 -0.0858279790 1
## 1463 TCGTAGAGTTCGTCTC S100A12 -0.6726319971 0
## 1464 GACAGAGGTACCGCTG S100A12 -1.6040423780 1
## 1465 TCTCATACACATAACC S100A12 -0.2964142092 0
## 1466 TGGGCGTCATTGAGCT S100A12 0.9940409465 0
## 1467 CATGACACATGTCTCC S100A12 2.2504949429 0
## 1468 GAATAAGGTGCACGAA S100A12 -1.5936003073 1
## 1469 TGCGCAGCAAGCGAGT S100A12 0.9310254327 0
## 1470 CTTCTCTCAGCCAGAA S100A12 1.3469479205 0
## 1471 AAGCCGCAGTGGCACA S100A12 2.2835265482 0
## 1472 CTCTACGAGTGGACGT S100A12 -1.8154441886 0
## 1473 GTCATTTTCTATCCCG S100A12 -1.6941233129 0
## 1474 CGAGCACAGCCACTAT S100A12 1.1656800433 1
## 1475 AGTAGTCGTAACGACG S100A12 0.2981767199 0
## 1476 GACGTGCAGAGGGATA S100A12 0.5568622027 0
## 1477 GTCTTCGTCCAACCAA S100A12 -1.7690296835 0
## 1478 CAAGGCCTCGCCCTTA S100A12 -0.4611727588 0
## 1479 TGTGGTACATGGTTGT S100A12 -0.4952776277 0
## 1480 CCTCAGTTCGAATGCT S100A12 -0.1067351847 1
## 1481 ACCGTAATCTGAGGGA S100A12 -0.2864725353 1
## 1482 GTTAAGCCAGTTCATG S100A12 1.5740492452 0
## 1483 CTGCCTATCAATCTCT S100A12 -1.6532499756 0
## 1484 GACGGCTTCTCCAACC S100A12 0.2841949123 0
## 1485 TTTCCTCCAGTTCCCT S100A12 -0.3927048468 0
## 1486 GCGCCAAAGCCCTAAT S100A12 0.5218077975 0
## 1487 CCACCTATCCCGACTT S100A12 -1.7366670223 1
## 1488 TTTATGCCAGGGCATA S100A12 0.0633815721 1
## 1489 TACAGTGTCGCGGATC S100A12 1.8924824576 1
## 1490 AGCTCTCCACCACGTG S100A12 -0.0669120264 0
## 1491 GTGGGTCCATTGAGCT S100A12 0.0045933777 1
## 1492 GGGATGACAGACTCGC S100A12 0.8394319802 0
## 1493 ACACCAAGTTCGGGCT S100A12 -0.5738889539 1
## 1494 TGATTTCAGCTATGCT S100A12 -0.3244056696 1
## 1495 TGGCCAGAGAGGGCTT S100A12 -1.7038796931 0
## 1496 TCGGTAAGTAAAGTCA S100A12 0.1268788370 0
## 1497 TGAAAGAGTCCCTTGT S100A12 -1.5380369205 1
## 1498 CCGTGGATCGTTTATC S100A12 -1.4615950383 1
## 1499 GAACCTATCCTCAACC S100A12 0.4342073382 0
## 1500 GCGCAGTCATCCAACA S100A12 -0.3848789785 1
## 1501 ACATGGTTCGCGCCAA S100A12 0.2700740985 1
## 1502 CTTGGCTGTACGCACC S100A12 0.7902586869 0
## 1503 AGATTGCAGGCCCGTT S100A12 0.6404808743 0
## 1504 AGGCCGTGTTACGGAG S100A12 -2.0598959187 1
## 1505 GGTGTTAGTTAAGATG S100A12 -0.1209149889 0
## 1506 GGAATAATCCTGTAGA S100A12 -0.2133629942 1
## 1507 TATTACCGTATTAGCC S100A12 0.1895759215 1
## 1508 ATAACGCGTTAGTGGG S100A12 -1.7294224425 0
## 1509 AAACGGGGTTATCCGA S100A12 1.0553801659 0
## 1510 TGTGGTATCGTTTAGG S100A12 0.4089032865 1
## 1511 ATCACGAGTATGAATG S100A12 0.6954119675 1
## 1512 CAGCAGCTCACCTCGT S100A12 1.2797611370 0
## 1513 CCAATCCGTATTACCG S100A12 -0.2622243331 1
## 1514 TTCTACATCACATAGC S100A12 -0.2712457208 0
## 1515 TGTCCCATCGTATCAG S100A12 0.6062652717 0
## 1516 AGCTCTCAGTGTTTGC S100A12 1.0028210760 0
## 1517 CAACCTCAGTAACCCT S100A12 -0.4905733906 0
## 1518 GTGGGTCAGGTAAACT S100A12 0.8660267727 0
## 1519 TAAGTGCCACGTCAGC S100A12 -0.5867251071 1
## 1520 GACCTGGCAGCCACCA S100A12 0.0451883062 0
## 1521 ACAGCCGCAGGATCGA S100A12 1.3931456031 0
## 1522 AACTCCCCAGCTCGCA S100A12 0.8218047497 0
## 1523 GGAAAGCGTCTCTCGT S100A12 0.7740516094 0
## 1524 CGCTTCAAGCAGGTCA S100A12 0.8956316972 1
## 1525 GATCGCGAGAAGGGTA S100A12 0.6017345863 1
## 1526 AAGCCGCCAGGATTGG S100A12 -1.7153170876 1
## 1527 ATTGGACGTCGTGGCT S100A12 1.3050228527 0
## 1528 CCCATACCACTAAGTC S100A12 -1.5062672992 0
## 1529 TCTCTAATCCCATTTA S100A12 0.4837598961 1
## 1530 TCGTAGAGTGGTACAG S100A12 -0.4428146319 1
## 1531 AAACGGGAGAGACGAA S100A12 1.3031299518 0
## 1532 GACTACATCACCACCT S100A12 -1.5538336878 0
## 1533 GAAACTCAGTTGAGTA S100A12 0.3296069836 0
## 1534 CCCTCCTTCCTCCTAG S100A12 -1.6082509701 1
## 1535 GCGACCATCACGGTTA S100A12 -1.9807272592 0
## 1536 TCTCTAAAGAGTCGGT S100A12 -1.8083186909 1
## 1537 GGCTCGATCTCACATT S100A12 -0.7818358774 0
## 1538 CTGATAGAGGCAGGTT S100A12 -0.0805097536 1
## 1539 CATGCCTAGGAGTTTA S100A12 0.5486262137 1
## 1540 TGGCTGGTCAGCCTAA S100A12 1.9148622981 0
## 1541 TCAGATGTCGTTACAG S100A12 1.0544734653 0
## 1542 CAGCTGGGTTATGTGC S100A12 0.9798465561 0
## 1543 GGAACTTAGTCGTACT S100A12 1.9369465854 0
## 1544 CCGGGATCACCGGAAA S100A12 -1.5580193149 1
## 1545 CCTTCGATCAAAGACA S100A12 -0.3883573537 0
## 1546 CGAGAAGGTATCGCAT S100A12 0.2760697612 1
## 1547 CCTAAAGAGACTGGGT S100A12 -0.7612213604 0
## 1548 CAGATCACATTGGCGC S100A12 -0.3268259781 1
## 1549 CTAGCCTAGCTGGAAC S100A12 0.1835669580 1
## 1550 ATTGGTGTCTCGTATT S100A12 -0.1034134337 0
## 1551 GGGAATGTCAAAGTAG S100A12 0.4906277758 1
## 1552 CCATGTCCACGGCCAT S100A12 0.8162843545 0
## 1553 GGCAATTCATATGGTC S100A12 0.5482378446 0
## 1554 CTGTGCTCATGTCCTC S100A12 -0.4917983833 0
## 1555 TTAACTCCAACGCACC S100A12 -0.2447070870 0
## 1556 CGAACATAGCGGCTTC S100A12 0.9766937620 0
## 1557 TCGCGTTAGGCACATG S100A12 -0.2312604761 1
## 1558 GGGTTGCCAAACTGCT S100A12 -1.5654806858 0
## 1559 ATAAGAGCAGGTGCCT S100A12 -0.4125869155 1
## 1560 CGGACACGTATTCGTG S100A12 -1.4082649504 0
## 1561 CTGATAGTCACGACTA S100A12 1.6710590112 0
## 1562 GAACATCGTGAGTATA S100A12 -1.6117814482 0
## 1563 TGCTACCAGTGGTCCC S100A12 -1.7437336964 0
## 1564 GCTGGGTAGTCTTGCA S100A12 0.6754545979 0
## 1565 TACGGATGTCTAACGT S100A12 0.8408187987 0
## 1566 TGGGCGTCAATGGATA S100A12 -1.4597562263 1
## 1567 CTGCTGTCATTTGCTT S100A12 -0.2817129262 0
## 1568 GGGCATCAGCAGCCTC S100A12 -2.0497440806 1
## 1569 CGTGAGCAGACTAGAT S100A12 1.4769225659 0
## 1570 CAGCGACCACACCGAC S100A12 -0.1402447070 0
## 1571 CCCAATCCAGTTAACC S100A12 -1.5749842006 0
## 1572 CAGCGACTCAGCGACC S100A12 0.3275584733 0
## 1573 GAGCAGAAGCTATGCT S100A12 -1.5741601091 0
## 1574 CTCTGGTTCACTTCAT S100A12 0.6428123027 0
## 1575 CGCGTTTCAGCTGTGC S100A12 -1.6682080097 1
## 1576 GGACGTCCACCTCGGA S100A12 0.4357039113 0
## 1577 TAGTTGGAGAGTTGGC S100A12 1.2245391779 0
## 1578 ATTGGTGTCGGAATCT S100A12 0.4733043650 0
## 1579 GAATGAACACGGCCAT S100A12 0.2454060153 0
## 1580 GTGCATACAAGGTGTG S100A12 0.7627255985 0
## 1581 GGAATAAGTCGGCACT S100A12 1.3601341487 0
## 1582 ACCCACTTCCAAAGTC S100A12 1.0660739850 0
## 1583 ACTATCTCAATTCCTT S100A12 -1.6011636669 1
## 1584 AGCATACAGTGGGATC S100A12 -1.5932774614 0
## 1585 GTCATTTTCCGCATCT RP11-290F20.3 -0.0731099739 1
## 1586 ATAAGAGAGGAGTTGC RP11-290F20.3 -0.0818617021 1
## 1587 CATTATCCATGGTCTA RP11-290F20.3 -0.3645857947 0
## 1588 CTTAGGAGTGGCGAAT RP11-290F20.3 -1.4944747384 0
## 1589 CATCAGAAGCACCGCT RP11-290F20.3 0.4395385141 0
## 1590 GCGGGTTAGTAGCCGA RP11-290F20.3 0.8119823645 0
## 1591 CAGAGAGAGCGCCTTG RP11-290F20.3 0.8719901937 0
## 1592 CTGAAGTCAGACACTT RP11-290F20.3 0.7793057644 0
## 1593 GGACGTCCAGGTGCCT RP11-290F20.3 1.0844801138 1
## 1594 AAAGCAAGTGGTGTAG RP11-290F20.3 0.3074644558 0
## 1595 TCTCATACAGGGCATA RP11-290F20.3 -1.3723725770 0
## 1596 AACTCAGGTACTCGCG RP11-290F20.3 -1.3938177349 0
## 1597 CACATTTGTGAGTATA RP11-290F20.3 0.8117449374 0
## 1598 ACTTTCAAGGTGTTAA RP11-290F20.3 -0.2473771876 1
## 1599 TGCCCATCAGACGCAA RP11-290F20.3 1.8569608244 0
## 1600 CTAAGACCAATGCCAT RP11-290F20.3 0.6942666342 0
## 1601 CGGAGCTCATTTGCTT RP11-290F20.3 0.5483662730 0
## 1602 GAGCAGATCGACGGAA RP11-290F20.3 0.4105840938 0
## 1603 TAAACCGAGATCGATA RP11-290F20.3 -1.2737707021 0
## 1604 GTCTCGTGTACATCCA RP11-290F20.3 -1.4040330752 0
## 1605 GTATCTTAGACCCACC RP11-290F20.3 0.4517242730 1
## 1606 GAGCAGAAGAGCCTAG RP11-290F20.3 0.4339424068 1
## 1607 GTGCAGCTCACATAGC RP11-290F20.3 -0.0135957201 0
## 1608 CCTATTAGTAAACCTC RP11-290F20.3 -0.0175192222 0
## 1609 AGAGTGGAGTTTAGGA RP11-290F20.3 0.5429658928 0
## 1610 TACGGGCAGGTGATTA RP11-290F20.3 1.5586095673 0
## 1611 ACTATCTCAATCTACG RP11-290F20.3 0.0705040817 0
## 1612 CGAGCCATCAGGCAAG RP11-290F20.3 0.4837486666 0
## 1613 CGAATGTCAATTGCTG RP11-290F20.3 -1.1622469966 0
## 1614 TACGGTATCGTTACGA RP11-290F20.3 0.9314221833 0
## 1615 CTGTGCTCAAGGTGTG RP11-290F20.3 1.3955215645 0
## 1616 CCATGTCGTAACGACG RP11-290F20.3 -0.0244605943 0
## 1617 TGCTGCTAGACACTAA RP11-290F20.3 -0.1150911823 0
## 1618 ACGGGTCTCGCTTAGA RP11-290F20.3 0.9245458158 0
## 1619 ACGAGGAAGGCTAGCA RP11-290F20.3 0.8708225302 0
## 1620 GCACTCTGTCGGCACT RP11-290F20.3 1.1435230216 0
## 1621 ATCATGGGTTTAAGCC RP11-290F20.3 0.0070925915 0
## 1622 GCATGTAGTAAAGGAG RP11-290F20.3 -0.0986112346 0
## 1623 CAACTAGAGTGGGCTA RP11-290F20.3 0.5891030291 0
## 1624 AACACGTCAATCAGAA RP11-290F20.3 -1.1872656948 1
## 1625 AAAGTAGGTGTCTGAT RP11-290F20.3 -1.1790736451 1
## 1626 CTCATTATCGCTGATA RP11-290F20.3 1.5446996406 0
## 1627 TACTCGCCAACGCACC RP11-290F20.3 1.1031345903 0
## 1628 GGACATTGTCCTGCTT RP11-290F20.3 -1.1734667828 1
## 1629 ACTGAACAGAGCTGGT RP11-290F20.3 0.6547486309 0
## 1630 CTCGGGAAGTGCAAGC RP11-290F20.3 -1.2192721413 0
## 1631 AGCTCCTAGCATGGCA RP11-290F20.3 0.0250943685 0
## 1632 TATTACCGTCGACTGC RP11-290F20.3 0.8046573370 0
## 1633 GAACGGACATTTCACT RP11-290F20.3 0.1987600209 0
## 1634 CACAAACTCCCGGATG RP11-290F20.3 0.7001980677 0
## 1635 GCTCCTAAGGGAGTAA RP11-290F20.3 0.1313479623 0
## 1636 GACTAACCATCACGTA RP11-290F20.3 -1.1939941240 1
## 1637 TACTCGCTCTTAACCT RP11-290F20.3 0.7162544041 0
## 1638 AGGCCGTCAGGAACGT RP11-290F20.3 0.7562033542 0
## 1639 CCACTACAGTGCTGCC RP11-290F20.3 -1.2581840879 0
## 1640 ATCCACCCAAGCCGTC RP11-290F20.3 0.2324446668 0
## 1641 GAGTCCGAGACTGTAA RP11-290F20.3 0.1568117510 0
## 1642 AAGCCGCCAGAAGCAC RP11-290F20.3 0.1518873580 0
## 1643 GACACGCCAGATTGCT RP11-290F20.3 1.0516694153 0
## 1644 CGACTTCAGGCTACGA RP11-290F20.3 1.1020002475 0
## 1645 GGGTTGCCAGTAAGCG RP11-290F20.3 1.0311145810 0
## 1646 AGTGAGGGTCAGAATA RP11-290F20.3 0.1769561819 0
## 1647 GATCTAGCAGCCACCA RP11-290F20.3 -1.1127170383 0
## 1648 ACGAGGACAAGACGTG RP11-290F20.3 0.1299170764 0
## 1649 CATATGGCAAGCCGCT RP11-290F20.3 -1.2290403463 0
## 1650 TTATGCTCAGACGCTC RP11-290F20.3 -1.1220064558 0
## 1651 AGTGTCAAGTCGCCGT RP11-290F20.3 0.2068498718 0
## 1652 AAGGCAGGTCTGCCAG RP11-290F20.3 1.1849627237 0
## 1653 TCAGGATAGCCCGAAA RP11-290F20.3 0.1545624479 0
## 1654 CCACTACCACTAGTAC RP11-290F20.3 -1.1226409599 1
## 1655 AGCAGCCTCGCCAAAT RP11-290F20.3 -1.1565277203 0
## 1656 CTGCCTATCCATGCTC RP11-290F20.3 0.7442306697 0
## 1657 GCTGCAGCATAGTAAG RP11-290F20.3 1.4100022926 0
## 1658 GCGCAGTTCAGTTCGA RP11-290F20.3 -1.1690868005 1
## 1659 GGGCATCGTAGCGCTC RP11-290F20.3 1.5633482919 0
## 1660 CTAATGGGTTACGTCA RP11-290F20.3 0.7521999108 0
## 1661 ATTCTACGTTATCGGT RP11-290F20.3 1.1382471818 0
## 1662 GAAATGATCAGCTGGC RP11-290F20.3 1.3434806072 0
## 1663 TGCTACCTCGTCCAGG RP11-290F20.3 0.1441073853 0
## 1664 ACATGGTCACTTACGA RP11-290F20.3 -1.1134399129 0
## 1665 ACTTTCAAGCGTTGCC RP11-290F20.3 -1.1243649104 0
## 1666 CCTACACGTAAACCTC RP11-290F20.3 -1.1332950437 0
## 1667 ATTGGTGAGATCCCAT RP11-290F20.3 0.6323964929 0
## 1668 CCGGGATCACAGACAG RP11-290F20.3 -1.1326588892 0
## 1669 CAGTAACTCTCTTGAT RP11-290F20.3 -1.0901109462 0
## 1670 ATCTACTCAATAGCGG RP11-290F20.3 -1.1412714871 0
## 1671 ACCCACTGTTAAGAAC RP11-290F20.3 0.2515366948 1
## 1672 ACATACGTCTGCTTGC RP11-290F20.3 -1.1222261771 0
## 1673 CGTCTACGTTGAACTC RP11-290F20.3 0.6005365397 0
## 1674 ATTATCCCAGCAGTTT RP11-290F20.3 0.7545239637 0
## 1675 GAAACTCTCGTTACGA RP11-290F20.3 -1.1786592693 0
## 1676 GATGAAACATCATCCC RP11-290F20.3 1.7253985789 0
## 1677 CACAGTATCTGTCCGT RP11-290F20.3 0.7743253811 0
## 1678 TGAAAGAAGGAGCGAG RP11-290F20.3 -1.1310149484 0
## 1679 CCGGTAGAGACCGGAT RP11-290F20.3 1.3275829414 0
## 1680 TGCGGGTTCTAACCGA RP11-290F20.3 -1.1916331720 1
## 1681 GGCGACTTCGCGCCAA RP11-290F20.3 0.2612507400 0
## 1682 GGGATGAAGTCGCCGT RP11-290F20.3 0.2440859508 0
## 1683 GATTCAGGTACAGACG RP11-290F20.3 0.7288709956 0
## 1684 TAGACCACAAGAAGAG RP11-290F20.3 1.6017209103 0
## 1685 AATCCAGGTCAGAGGT RP11-290F20.3 0.1829415439 1
## 1686 TGAGCCGCAATGGACG RP11-290F20.3 -1.1887375886 0
## 1687 CACATAGGTACTCTCC RP11-290F20.3 0.1871096644 0
## 1688 CATGGCGAGCAATATG RP11-290F20.3 0.1668594588 1
## 1689 CAGTAACGTTATTCTC RP11-290F20.3 -1.1186188592 1
## 1690 GCGAGAAGTTCCGTCT RP11-290F20.3 -1.1645547066 0
## 1691 TTTACTGGTCCCTTGT RP11-290F20.3 0.1083617913 1
## 1692 ATCATGGCACGAAATA RP11-290F20.3 -1.1457776124 0
## 1693 CGCCAAGAGGCAGTCA RP11-290F20.3 -1.0765179338 0
## 1694 CGTCCATGTCCAGTAT RP11-290F20.3 0.8519265572 0
## 1695 TGGCGCATCCATTCTA RP11-290F20.3 -1.1531398683 0
## 1696 CCCATACGTAGCTTGT RP11-290F20.3 -1.2511211661 0
## 1697 GCATGCGGTGCTGTAT RP11-290F20.3 0.1137403034 0
## 1698 TTCTTAGCATGCTAGT RP11-290F20.3 0.1072035487 0
## 1699 TGCGCAGAGTGGACGT RP11-290F20.3 0.2945430909 1
## 1700 ATTATCCGTTGCTCCT RP11-290F20.3 1.0001275961 0
## 1701 AGAATAGAGACTAGGC RP11-290F20.3 0.1748029968 0
## 1702 CCTACACAGCTGCAAG RP11-290F20.3 -1.1308776979 1
## 1703 GACAGAGAGTGCTGCC RP11-290F20.3 2.0646669856 0
## 1704 GTTCGGGTCCCAAGAT RP11-290F20.3 1.4545704535 0
## 1705 AGTAGTCGTAAGCACG RP11-290F20.3 -1.1643179296 0
## 1706 CTCACACGTACCTACA RP11-290F20.3 -1.0679855067 0
## 1707 GCAGTTAAGTGGGTTG RP11-290F20.3 0.7443442349 0
## 1708 GTCAAGTCAGCTCGAC RP11-290F20.3 0.1468078412 1
## 1709 GCTGCGATCCCTAACC RP11-290F20.3 0.2686773149 1
## 1710 GATCGTATCCCTAACC RP11-290F20.3 0.8255178516 0
## 1711 TGAGAGGTCCGTAGTA RP11-290F20.3 -1.0931373246 0
## 1712 CTCGTCAGTGCACTTA RP11-290F20.3 0.2183861554 0
## 1713 AGCATACAGCAAATCA RP11-290F20.3 1.6953490773 0
## 1714 TCGGGACGTGTCAATC RP11-290F20.3 0.1880867316 0
## 1715 ATGCGATGTAAACACA RP11-290F20.3 -1.1672758582 0
## 1716 CATGACACACAACGTT RP11-290F20.3 1.1869288733 0
## 1717 GCTTGAAGTGCTAGCC RP11-290F20.3 -1.2141280862 0
## 1718 TTTGGTTTCTCTTATG RP11-290F20.3 -1.1660287806 0
## 1719 ACACCCTGTGAAATCA RP11-290F20.3 -1.1613552426 0
## 1720 ATCATGGTCCCTCAGT RP11-290F20.3 0.8236225935 0
## 1721 CCTCTGACAATCAGAA RP11-290F20.3 1.3492765367 0
## 1722 ACATACGAGACACTAA RP11-290F20.3 -0.9803430647 0
## 1723 TCACAAGTCCGTAGGC RP11-290F20.3 -1.0455979643 1
## 1724 GCAGTTAGTCCAGTGC RP11-290F20.3 -1.1183780310 1
## 1725 AGTGAGGGTTACAGAA RP11-290F20.3 0.9294371959 0
## 1726 CACACAAGTAATCACC RP11-290F20.3 -1.1096762257 0
## 1727 GATCGCGAGGCTAGAC RP11-290F20.3 1.4941103528 0
## 1728 CTCGTACTCCTTTCGG RP11-290F20.3 -1.1712114727 0
## 1729 ATCCACCTCGGCGGTT RP11-290F20.3 1.6489726414 0
## 1730 GAAGCAGAGCTAGTTC RP11-290F20.3 -1.0518186010 0
## 1731 CAGTCCTAGTGTCTCA RP11-290F20.3 0.2691308346 0
## 1732 CGCTTCACAATGGATA RP11-290F20.3 0.2316839403 0
## 1733 TCCCGATTCATATCGG RP11-290F20.3 0.7688280208 0
## 1734 TGTGGTACATATACCG RP11-290F20.3 1.2126664986 0
## 1735 TACCTTACACTACAGT RP11-290F20.3 -1.0806219821 1
## 1736 GTAGGCCGTCCGTCAG RP11-290F20.3 0.2700208847 0
## 1737 CAGAATCCAATCAGAA RP11-290F20.3 1.4470003593 0
## 1738 GGATTACTCTGTGCAA RP11-290F20.3 -1.1130753528 1
## 1739 GTCGTAAGTTTGTTTC RP11-290F20.3 1.1532228714 0
## 1740 GATCGTAAGCCAGTAG RP11-290F20.3 -1.0904712004 0
## 1741 GACTACAGTTAAAGAC RP11-290F20.3 0.9067380590 0
## 1742 CATGACACAACACCTA RP11-290F20.3 1.7553170399 0
## 1743 CACCAGGTCACGCGGT RP11-290F20.3 0.2984420209 0
## 1744 GTCTTCGTCTGAGTGT RP11-290F20.3 0.2459367098 1
## 1745 CCTTCGAAGTGGGATC RP11-290F20.3 0.3731787007 0
## 1746 GTGCGGTGTCCTGCTT RP11-290F20.3 0.9644807811 0
## 1747 GTCACAACATGCCTTC RP11-290F20.3 -1.0708954694 1
## 1748 CAGAGAGTCAGTCAGT RP11-290F20.3 0.8630848675 0
## 1749 GTGCGGTGTACTCTCC RP11-290F20.3 0.8290380731 0
## 1750 CAGCTAATCAAGATCC RP11-290F20.3 0.3262076212 1
## 1751 CAAGATCGTTGGGACA RP11-290F20.3 -1.0765179338 0
## 1752 TTTATGCCATCACAAC RP11-290F20.3 1.5904554271 0
## 1753 CGGTTAATCCCAAGTA RP11-290F20.3 0.2514728106 0
## 1754 TAGCCGGTCCGTAGTA RP11-290F20.3 0.3637303719 1
## 1755 ACGAGCCGTGTTTGTG RP11-290F20.3 0.2070074143 0
## 1756 AGCATACCAAACCCAT RP11-290F20.3 0.8236310310 0
## 1757 GAAATGATCAACACTG RP11-290F20.3 0.3457657972 0
## 1758 TATCTCACATAACCTG RP11-290F20.3 0.2426972336 0
## 1759 CCGTACTCACTTCTGC RP11-290F20.3 -1.0609248121 1
## 1760 CTAGAGTTCAGAGGTG RP11-290F20.3 0.2530330132 0
## 1761 CTGATAGCATACAGCT RP11-290F20.3 -1.1133226128 0
## 1762 TCGAGGCCACGGTAGA RP11-290F20.3 -1.1062424644 1
## 1763 GATCAGTTCACTTATC RP11-290F20.3 0.7227040155 0
## 1764 GTTTCTAAGCCCTAAT RP11-290F20.3 0.1873362924 0
## 1765 CAGCTGGAGGAATTAC RP11-290F20.3 0.3746364018 1
## 1766 AGAGTGGTCGATCCCT RP11-290F20.3 0.3617054394 0
## 1767 CATGGCGCAACTGCTA RP11-290F20.3 -1.1511418777 0
## 1768 CTGGTCTGTATATGGA RP11-290F20.3 -1.0441199853 1
## 1769 CGTCACTCACAGGAGT RP11-290F20.3 0.2549004537 0
## 1770 AACTGGTTCAACCAAC RP11-290F20.3 -1.0438652913 1
## 1771 CCATTCGCAGGGAGAG RP11-290F20.3 -1.1011613463 0
## 1772 CATCAGATCTTCAACT RP11-290F20.3 -1.0851681669 0
## 1773 GAATGAATCAGGCAAG RP11-290F20.3 0.7791021847 0
## 1774 TGTCCCATCGAATGCT RP11-290F20.3 0.3637861607 0
## 1775 AGTGGGACAGCCAATT RP11-290F20.3 0.3717800389 0
## 1776 AGAGCTTTCACATGCA RP11-290F20.3 1.3223008689 0
## 1777 TGCGGGTTCTGCAGTA RP11-290F20.3 0.3816468859 0
## 1778 GTCGTAAGTCGGCACT RP11-290F20.3 -1.2635336816 0
## 1779 CTCGAGGTCGGAGCAA RP11-290F20.3 -1.0891618652 0
## 1780 CTACACCAGATGAGAG RP11-290F20.3 -1.0415854839 0
## 1781 ACGGCCATCTTACCTA RP11-290F20.3 0.9416642216 0
## 1782 CCCAGTTCACACCGAC RP11-290F20.3 -1.0140198828 1
## 1783 TCGGGACTCGGATGGA RP11-290F20.3 0.4190351251 1
## 1784 CATCGGGTCCCGACTT RP11-290F20.3 -1.0345336715 1
## 1785 CTTAACTGTAAGGATT RP11-290F20.3 -1.0186093202 0
## 1786 AACCATGAGCGTAATA RP11-290F20.3 0.9827088619 0
## 1787 TCAGATGGTCTTCTCG RP11-290F20.3 0.3553551656 0
## 1788 CTCACACTCCCAACGG RP11-290F20.3 -1.0249327251 0
## 1789 CCATGTCAGGATGGAA RP11-290F20.3 -1.1111277511 0
## 1790 GGGTCTGGTACTTGAC RP11-290F20.3 -1.0701671508 0
## 1791 GGAACTTCACAGTCGC RP11-290F20.3 0.3810021031 0
## 1792 GACCTGGCACATCCAA RP11-290F20.3 0.9112500650 0
## 1793 CAGTCCTCAAGACACG RP11-290F20.3 -1.0428523645 1
## 1794 AGATCTGCATATGGTC RP11-290F20.3 -1.1089132345 0
## 1795 CATCAGAGTATTCTCT RP11-290F20.3 -1.0215912902 0
## 1796 TGCACCTTCGATAGAA RP11-290F20.3 -1.0827596189 0
## 1797 CCTACACTCCCAAGTA RP11-290F20.3 1.2697681301 0
## 1798 ACTTTCATCGTAGATC RP11-290F20.3 -1.1192686334 1
## 1799 TTGCGTCCACCATGTA RP11-290F20.3 -1.0531960646 0
## 1800 AAATGCCAGGTGCTAG RP11-290F20.3 -1.1627226092 0
## 1801 ATGCGATGTCCATCCT RP11-290F20.3 0.3942362780 1
## 1802 CCAGCGAAGCCACTAT RP11-290F20.3 -1.0456073966 0
## 1803 TACTTGTAGTGTACTC RP11-290F20.3 1.8018515097 0
## 1804 AGGGATGTCTCGCTTG RP11-290F20.3 -1.0407960127 1
## 1805 TGTCCCAGTATTAGCC RP11-290F20.3 0.3654408729 0
## 1806 TGCTACCTCGCACTCT RP11-290F20.3 -0.9856798299 0
## 1807 GTAACGTCAGTATAAG RP11-290F20.3 -1.0196574703 1
## 1808 GCGCAACGTTCGTTGA RP11-290F20.3 -1.0184325273 1
## 1809 GCGAGAACATGAGCGA RP11-290F20.3 0.9910807007 1
## 1810 TGCCCTAGTGCACCAC RP11-290F20.3 -1.0578400303 1
## 1811 CTAGAGTGTAAACACA RP11-290F20.3 1.0111578790 0
## 1812 AGTAGTCCACCGGAAA RP11-290F20.3 1.3343870915 0
## 1813 CATATTCTCAGCGATT RP11-290F20.3 0.4894472099 0
## 1814 GAATGAAGTAACGACG RP11-290F20.3 0.3364959458 0
## 1815 GATCAGTAGTACTTGC RP11-290F20.3 -1.0677237551 0
## 1816 CAAGAAACAGGATTGG RP11-290F20.3 -1.0568509804 1
## 1817 CCTATTATCAACACTG RP11-290F20.3 -1.0961895564 0
## 1818 CAGCAGCTCTGCGGCA RP11-290F20.3 -1.0758284160 0
## 1819 ATAAGAGAGCTGCGAA RP11-290F20.3 -1.0505369920 0
## 1820 AGATCTGCACCTATCC RP11-290F20.3 1.6934633832 0
## 1821 GACACGCGTAGAGCTG RP11-290F20.3 0.3580977756 0
## 1822 TACACGAAGCTAGGCA RP11-290F20.3 0.4032936880 0
## 1823 AACACGTTCCGAAGAG RP11-290F20.3 -1.0939124615 0
## 1824 TTAACTCGTGTAATGA RP11-290F20.3 -1.0789035307 1
## 1825 TGGCGCAGTTCAGACT RP11-290F20.3 0.9158114739 0
## 1826 CATCAGAGTCTAGTCA RP11-290F20.3 -1.0223952974 1
## 1827 CTAGAGTAGCATGGCA RP11-290F20.3 1.0888215991 0
## 1828 TACGGTAAGCGTGAAC RP11-290F20.3 0.3580323847 0
## 1829 TGACTTTTCGGATGTT RP11-290F20.3 -1.0080646903 1
## 1830 CTCACACTCCTACAGA RP11-290F20.3 -1.0527437721 0
## 1831 CCGTACTCACTGAAGG RP11-290F20.3 1.4405175259 0
## 1832 ATAACGCGTGGAAAGA RP11-290F20.3 0.2435347700 0
## 1833 GCTTGAAAGCTAGGCA RP11-290F20.3 -1.1028703917 1
## 1834 AAGTCTGGTGTTGGGA RP11-290F20.3 0.9950565526 0
## 1835 CGATCGGGTACAGCAG RP11-290F20.3 0.4163685194 0
## 1836 AGTAGTCTCGATGAGG RP11-290F20.3 1.6179034034 0
## 1837 CGACCTTCAGACGCTC RP11-290F20.3 -1.0516166299 1
## 1838 GCATACACATGCAACT RP11-290F20.3 1.0447196169 0
## 1839 TCCCGATTCGCAGGCT RP11-290F20.3 -1.1131488002 0
## 1840 TTAGGCAAGATCGATA RP11-290F20.3 -1.0378549382 1
## 1841 TCGTACCAGGCAAAGA RP11-290F20.3 0.3787875374 0
## 1842 GGATGTTGTATAGGGC RP11-290F20.3 1.6591724968 0
## 1843 AATCCAGCAGAGTGTG RP11-290F20.3 0.3836009268 0
## 1844 CATGCCTCACGGCCAT RP11-290F20.3 0.4720947431 1
## 1845 CTCGAAACACATGACT RP11-290F20.3 1.5026919198 0
## 1846 CTGCCTAGTTGCGTTA RP11-290F20.3 1.0748358642 0
## 1847 GGCGACTAGACAGAGA RP11-290F20.3 -1.0715175365 1
## 1848 TACAGTGGTGTAATGA RP11-290F20.3 -1.0325098142 1
## 1849 ACGAGCCTCTTATCTG RP11-290F20.3 1.8480767448 0
## 1850 GGGAATGCAAATACAG RP11-290F20.3 -1.0335963264 1
## 1851 TGCACCTGTACCGAGA RP11-290F20.3 1.4239193735 0
## 1852 ATCATCTTCAGTCAGT RP11-290F20.3 0.4455564811 0
## 1853 CATATTCGTACAGTTC RP11-290F20.3 -0.9839385005 0
## 1854 GCATGATGTTCCACTC RP11-290F20.3 -1.0152789941 0
## 1855 AAGGCAGTCACGACTA RP11-290F20.3 -1.0905554780 0
## 1856 GAAACTCTCTATCCCG RP11-290F20.3 0.3733422948 0
## 1857 AGCATACTCTGCTGTC RP11-290F20.3 -1.0564698771 1
## 1858 TGGGCGTCAGCGTTCG RP11-290F20.3 -1.0985795337 1
## 1859 TCGTAGAGTTCGTCTC RP11-290F20.3 0.2896567905 0
## 1860 GACAGAGGTACCGCTG RP11-290F20.3 0.4903839467 1
## 1861 TCTCATACACATAACC RP11-290F20.3 -1.0141721129 0
## 1862 TGGGCGTCATTGAGCT RP11-290F20.3 0.3581199215 0
## 1863 CATGACACATGTCTCC RP11-290F20.3 -1.0467842887 0
## 1864 GAATAAGGTGCACGAA RP11-290F20.3 -1.0101089546 1
## 1865 TGCGCAGCAAGCGAGT RP11-290F20.3 -0.9065726109 0
## 1866 CTTCTCTCAGCCAGAA RP11-290F20.3 0.3406334053 0
## 1867 AAGCCGCAGTGGCACA RP11-290F20.3 -0.9883363778 0
## 1868 CTCTACGAGTGGACGT RP11-290F20.3 1.0611055606 0
## 1869 GTCATTTTCTATCCCG RP11-290F20.3 1.4601866921 0
## 1870 CGAGCACAGCCACTAT RP11-290F20.3 -1.0216911359 1
## 1871 AGTAGTCGTAACGACG RP11-290F20.3 1.0981562562 0
## 1872 GACGTGCAGAGGGATA RP11-290F20.3 -1.1556906689 0
## 1873 GTCTTCGTCCAACCAA RP11-290F20.3 0.3719064989 0
## 1874 CAAGGCCTCGCCCTTA RP11-290F20.3 1.0242849670 0
## 1875 TGTGGTACATGGTTGT RP11-290F20.3 0.4530932943 0
## 1876 CCTCAGTTCGAATGCT RP11-290F20.3 -0.9487357746 1
## 1877 ACCGTAATCTGAGGGA RP11-290F20.3 -0.9961577188 1
## 1878 GTTAAGCCAGTTCATG RP11-290F20.3 -1.0185141084 0
## 1879 CTGCCTATCAATCTCT RP11-290F20.3 0.4638418407 0
## 1880 GACGGCTTCTCCAACC RP11-290F20.3 1.0867015865 0
## 1881 TTTCCTCCAGTTCCCT RP11-290F20.3 0.3909865050 0
## 1882 GCGCCAAAGCCCTAAT RP11-290F20.3 -1.1037384675 0
## 1883 CCACCTATCCCGACTT RP11-290F20.3 -1.0265089465 1
## 1884 TTTATGCCAGGGCATA RP11-290F20.3 -1.0580134016 1
## 1885 TACAGTGTCGCGGATC RP11-290F20.3 -1.0243369321 1
## 1886 AGCTCTCCACCACGTG RP11-290F20.3 0.3788100047 0
## 1887 GTGGGTCCATTGAGCT RP11-290F20.3 -1.0751810073 1
## 1888 GGGATGACAGACTCGC RP11-290F20.3 -1.0675087059 0
## 1889 ACACCAAGTTCGGGCT RP11-290F20.3 0.9735368435 1
## 1890 TGATTTCAGCTATGCT RP11-290F20.3 -1.0120511149 1
## 1891 TGGCCAGAGAGGGCTT RP11-290F20.3 0.9929379018 0
## 1892 TCGGTAAGTAAAGTCA RP11-290F20.3 1.3883800277 0
## 1893 TGAAAGAGTCCCTTGT RP11-290F20.3 -0.9792721350 1
## 1894 CCGTGGATCGTTTATC RP11-290F20.3 -0.9347079401 1
## 1895 GAACCTATCCTCAACC RP11-290F20.3 -1.0527588126 0
## 1896 GCGCAGTCATCCAACA RP11-290F20.3 0.4503928297 1
## 1897 ACATGGTTCGCGCCAA RP11-290F20.3 -0.9993044923 1
## 1898 CTTGGCTGTACGCACC RP11-290F20.3 -1.1356315004 0
## 1899 AGATTGCAGGCCCGTT RP11-290F20.3 0.9587978199 0
## 1900 AGGCCGTGTTACGGAG RP11-290F20.3 -1.1239398844 1
## 1901 GGTGTTAGTTAAGATG RP11-290F20.3 0.5400571194 0
## 1902 GGAATAATCCTGTAGA RP11-290F20.3 -0.9802700130 1
## 1903 TATTACCGTATTAGCC RP11-290F20.3 0.4768962340 1
## 1904 ATAACGCGTTAGTGGG RP11-290F20.3 1.0680293703 0
## 1905 AAACGGGGTTATCCGA RP11-290F20.3 -1.0038153645 0
## 1906 TGTGGTATCGTTTAGG RP11-290F20.3 0.5277067947 1
## 1907 ATCACGAGTATGAATG RP11-290F20.3 -1.0465058181 1
## 1908 CAGCAGCTCACCTCGT RP11-290F20.3 -0.9914900672 0
## 1909 CCAATCCGTATTACCG RP11-290F20.3 -0.9916457309 1
## 1910 TTCTACATCACATAGC RP11-290F20.3 1.5546190247 0
## 1911 TGTCCCATCGTATCAG RP11-290F20.3 2.1261823041 0
## 1912 AGCTCTCAGTGTTTGC RP11-290F20.3 -1.1112443812 0
## 1913 CAACCTCAGTAACCCT RP11-290F20.3 2.1131611112 0
## 1914 GTGGGTCAGGTAAACT RP11-290F20.3 0.9451473517 0
## 1915 TAAGTGCCACGTCAGC RP11-290F20.3 1.4166753763 1
## 1916 GACCTGGCAGCCACCA RP11-290F20.3 0.3893838700 0
## 1917 ACAGCCGCAGGATCGA RP11-290F20.3 -1.0369277053 0
## 1918 AACTCCCCAGCTCGCA RP11-290F20.3 0.4052310970 0
## 1919 GGAAAGCGTCTCTCGT RP11-290F20.3 -1.0961425314 0
## 1920 CGCTTCAAGCAGGTCA RP11-290F20.3 -0.9923994971 1
## 1921 GATCGCGAGAAGGGTA RP11-290F20.3 0.4901928793 1
## 1922 AAGCCGCCAGGATTGG RP11-290F20.3 0.4662062156 1
## 1923 ATTGGACGTCGTGGCT RP11-290F20.3 1.0008760359 0
## 1924 CCCATACCACTAAGTC RP11-290F20.3 2.2825911268 0
## 1925 TCTCTAATCCCATTTA RP11-290F20.3 0.5644215239 1
## 1926 TCGTAGAGTGGTACAG RP11-290F20.3 -1.0486027027 1
## 1927 AAACGGGAGAGACGAA RP11-290F20.3 0.4728357828 0
## 1928 GACTACATCACCACCT RP11-290F20.3 1.1295003977 0
## 1929 GAAACTCAGTTGAGTA RP11-290F20.3 0.5433770181 0
## 1930 CCCTCCTTCCTCCTAG RP11-290F20.3 0.4059733373 1
## 1931 GCGACCATCACGGTTA RP11-290F20.3 0.5595781509 0
## 1932 TCTCTAAAGAGTCGGT RP11-290F20.3 -1.0789515144 1
## 1933 GGCTCGATCTCACATT RP11-290F20.3 -1.1472914196 0
## 1934 CTGATAGAGGCAGGTT RP11-290F20.3 -1.0973388153 1
## 1935 CATGCCTAGGAGTTTA RP11-290F20.3 -1.0933646637 1
## 1936 TGGCTGGTCAGCCTAA RP11-290F20.3 0.5234244104 0
## 1937 TCAGATGTCGTTACAG RP11-290F20.3 0.4519325678 0
## 1938 CAGCTGGGTTATGTGC RP11-290F20.3 -1.0251839757 0
## 1939 GGAACTTAGTCGTACT RP11-290F20.3 1.1150947974 0
## 1940 CCGGGATCACCGGAAA RP11-290F20.3 -0.9844102478 1
## 1941 CCTTCGATCAAAGACA RP11-290F20.3 -1.0276629154 0
## 1942 CGAGAAGGTATCGCAT RP11-290F20.3 -0.9954814921 1
## 1943 CCTAAAGAGACTGGGT RP11-290F20.3 1.5170022196 0
## 1944 CAGATCACATTGGCGC RP11-290F20.3 -1.0074388820 1
## 1945 CTAGCCTAGCTGGAAC RP11-290F20.3 0.3774897675 1
## 1946 ATTGGTGTCTCGTATT RP11-290F20.3 0.5692119637 0
## 1947 GGGAATGTCAAAGTAG RP11-290F20.3 0.4450861456 1
## 1948 CCATGTCCACGGCCAT RP11-290F20.3 0.4679837851 0
## 1949 GGCAATTCATATGGTC RP11-290F20.3 -1.0922033554 0
## 1950 CTGTGCTCATGTCCTC RP11-290F20.3 -1.0617603273 0
## 1951 TTAACTCCAACGCACC RP11-290F20.3 1.1455189920 0
## 1952 CGAACATAGCGGCTTC RP11-290F20.3 0.4878303928 0
## 1953 TCGCGTTAGGCACATG RP11-290F20.3 0.4422988560 1
## 1954 GGGTTGCCAAACTGCT RP11-290F20.3 -0.9676886145 0
## 1955 ATAAGAGCAGGTGCCT RP11-290F20.3 -1.0361198005 1
## 1956 CGGACACGTATTCGTG RP11-290F20.3 2.5000000000 0
## 1957 CTGATAGTCACGACTA RP11-290F20.3 -1.0884029330 0
## 1958 GAACATCGTGAGTATA RP11-290F20.3 -0.9967070879 0
## 1959 TGCTACCAGTGGTCCC RP11-290F20.3 1.7479208100 0
## 1960 GCTGGGTAGTCTTGCA RP11-290F20.3 1.1032367171 0
## 1961 TACGGATGTCTAACGT RP11-290F20.3 0.5634390184 0
## 1962 TGGGCGTCAATGGATA RP11-290F20.3 -0.9611815423 1
## 1963 CTGCTGTCATTTGCTT RP11-290F20.3 -0.9897499895 0
## 1964 GGGCATCAGCAGCCTC RP11-290F20.3 -1.1112694322 1
## 1965 CGTGAGCAGACTAGAT RP11-290F20.3 -1.0734319931 0
## 1966 CAGCGACCACACCGAC RP11-290F20.3 1.5882106625 0
## 1967 CCCAATCCAGTTAACC RP11-290F20.3 2.3749344201 0
## 1968 CAGCGACTCAGCGACC RP11-290F20.3 0.4939997498 0
## 1969 GAGCAGAAGCTATGCT RP11-290F20.3 -0.9765885030 0
## 1970 CTCTGGTTCACTTCAT RP11-290F20.3 1.2051040065 0
## 1971 CGCGTTTCAGCTGTGC RP11-290F20.3 -1.0190924979 1
## 1972 GGACGTCCACCTCGGA RP11-290F20.3 1.0376297775 0
## 1973 TAGTTGGAGAGTTGGC RP11-290F20.3 0.4947039045 0
## 1974 ATTGGTGTCGGAATCT RP11-290F20.3 -1.0410915863 0
## 1975 GAATGAACACGGCCAT RP11-290F20.3 1.7871359915 0
## 1976 GTGCATACAAGGTGTG RP11-290F20.3 0.3754426697 0
## 1977 GGAATAAGTCGGCACT RP11-290F20.3 -0.9179460295 0
## 1978 ACCCACTTCCAAAGTC RP11-290F20.3 0.9088697149 0
## 1979 ACTATCTCAATTCCTT RP11-290F20.3 0.5575498226 1
## 1980 AGCATACAGTGGGATC RP11-290F20.3 1.2000625501 0
## 1981 GTCATTTTCCGCATCT FCER1A 0.3678042569 1
## 1982 ATAAGAGAGGAGTTGC FCER1A 0.4202243744 1
## 1983 CATTATCCATGGTCTA FCER1A -0.1095150625 0
## 1984 CTTAGGAGTGGCGAAT FCER1A 0.1102093559 0
## 1985 CATCAGAAGCACCGCT FCER1A 0.3142158275 0
## 1986 GCGGGTTAGTAGCCGA FCER1A -0.0107346719 0
## 1987 CAGAGAGAGCGCCTTG FCER1A 0.1719595014 0
## 1988 CTGAAGTCAGACACTT FCER1A -0.2952147381 0
## 1989 GGACGTCCAGGTGCCT FCER1A 2.5000000000 1
## 1990 AAAGCAAGTGGTGTAG FCER1A -0.2624746292 0
## 1991 TCTCATACAGGGCATA FCER1A -0.1270662273 0
## 1992 AACTCAGGTACTCGCG FCER1A 0.0366624288 0
## 1993 CACATTTGTGAGTATA FCER1A -0.3103993699 0
## 1994 ACTTTCAAGGTGTTAA FCER1A 0.9587471169 1
## 1995 TGCCCATCAGACGCAA FCER1A -0.3780021861 0
## 1996 CTAAGACCAATGCCAT FCER1A -0.1943823411 0
## 1997 CGGAGCTCATTTGCTT FCER1A -0.4375016862 0
## 1998 GAGCAGATCGACGGAA FCER1A 0.9897464360 0
## 1999 TAAACCGAGATCGATA FCER1A -0.3118424439 0
## 2000 GTCTCGTGTACATCCA FCER1A -0.0620924688 0
## 2001 GTATCTTAGACCCACC FCER1A 1.6562570219 1
## 2002 GAGCAGAAGAGCCTAG FCER1A -0.3273423063 1
## 2003 GTGCAGCTCACATAGC FCER1A -0.3606962933 0
## 2004 CCTATTAGTAAACCTC FCER1A -0.3798013920 0
## 2005 AGAGTGGAGTTTAGGA FCER1A -0.3602942480 0
## 2006 TACGGGCAGGTGATTA FCER1A -0.1019320398 0
## 2007 ACTATCTCAATCTACG FCER1A -0.3654717144 0
## 2008 CGAGCCATCAGGCAAG FCER1A -0.2113296933 0
## 2009 CGAATGTCAATTGCTG FCER1A 0.6588851055 0
## 2010 TACGGTATCGTTACGA FCER1A -0.3343810879 0
## 2011 CTGTGCTCAAGGTGTG FCER1A -0.2419922709 0
## 2012 CCATGTCGTAACGACG FCER1A 1.4797381978 0
## 2013 TGCTGCTAGACACTAA FCER1A -0.3038818948 0
## 2014 ACGGGTCTCGCTTAGA FCER1A -0.2056124483 0
## 2015 ACGAGGAAGGCTAGCA FCER1A -0.1839129558 0
## 2016 GCACTCTGTCGGCACT FCER1A 1.3411312932 0
## 2017 ATCATGGGTTTAAGCC FCER1A -0.4908797005 0
## 2018 GCATGTAGTAAAGGAG FCER1A 0.0273742355 0
## 2019 CAACTAGAGTGGGCTA FCER1A -0.2353157116 0
## 2020 AACACGTCAATCAGAA FCER1A 2.4282712922 1
## 2021 AAAGTAGGTGTCTGAT FCER1A -0.5373580407 1
## 2022 CTCATTATCGCTGATA FCER1A -0.7809552428 0
## 2023 TACTCGCCAACGCACC FCER1A -0.5851838489 0
## 2024 GGACATTGTCCTGCTT FCER1A 1.6826485420 1
## 2025 ACTGAACAGAGCTGGT FCER1A -0.3643644350 0
## 2026 CTCGGGAAGTGCAAGC FCER1A -0.3034647579 0
## 2027 AGCTCCTAGCATGGCA FCER1A -0.3124353453 0
## 2028 TATTACCGTCGACTGC FCER1A -0.5166052352 0
## 2029 GAACGGACATTTCACT FCER1A -0.5418571809 0
## 2030 CACAAACTCCCGGATG FCER1A -0.5840274867 0
## 2031 GCTCCTAAGGGAGTAA FCER1A -0.5844461719 0
## 2032 GACTAACCATCACGTA FCER1A 2.5000000000 1
## 2033 TACTCGCTCTTAACCT FCER1A -0.5492232803 0
## 2034 AGGCCGTCAGGAACGT FCER1A -0.6803980590 0
## 2035 CCACTACAGTGCTGCC FCER1A -0.0647607178 0
## 2036 ATCCACCCAAGCCGTC FCER1A -0.6703025542 0
## 2037 GAGTCCGAGACTGTAA FCER1A -0.4072729016 0
## 2038 AAGCCGCCAGAAGCAC FCER1A -0.4837295302 0
## 2039 GACACGCCAGATTGCT FCER1A 1.0573882824 0
## 2040 CGACTTCAGGCTACGA FCER1A -0.5997611294 0
## 2041 GGGTTGCCAGTAAGCG FCER1A -0.3642384154 0
## 2042 AGTGAGGGTCAGAATA FCER1A -0.4202386706 0
## 2043 GATCTAGCAGCCACCA FCER1A -0.6608205197 0
## 2044 ACGAGGACAAGACGTG FCER1A -0.2881236847 0
## 2045 CATATGGCAAGCCGCT FCER1A -0.2162245480 0
## 2046 TTATGCTCAGACGCTC FCER1A -0.6985766845 0
## 2047 AGTGTCAAGTCGCCGT FCER1A -0.5411995279 0
## 2048 AAGGCAGGTCTGCCAG FCER1A -0.4773795902 0
## 2049 TCAGGATAGCCCGAAA FCER1A -0.3692880675 0
## 2050 CCACTACCACTAGTAC FCER1A -0.6376755516 1
## 2051 AGCAGCCTCGCCAAAT FCER1A -0.4459496318 0
## 2052 CTGCCTATCCATGCTC FCER1A -0.3677462271 0
## 2053 GCTGCAGCATAGTAAG FCER1A -0.5791159668 0
## 2054 GCGCAGTTCAGTTCGA FCER1A 0.9195574139 1
## 2055 GGGCATCGTAGCGCTC FCER1A 0.8397724404 0
## 2056 CTAATGGGTTACGTCA FCER1A -0.6300811872 0
## 2057 ATTCTACGTTATCGGT FCER1A -0.7997692481 0
## 2058 GAAATGATCAGCTGGC FCER1A -0.4201083617 0
## 2059 TGCTACCTCGTCCAGG FCER1A -0.4314883795 0
## 2060 ACATGGTCACTTACGA FCER1A -0.6530338308 0
## 2061 ACTTTCAAGCGTTGCC FCER1A -0.5795568815 0
## 2062 CCTACACGTAAACCTC FCER1A -0.5345234163 0
## 2063 ATTGGTGAGATCCCAT FCER1A -0.2433167218 0
## 2064 CCGGGATCACAGACAG FCER1A -0.4947639432 0
## 2065 CAGTAACTCTCTTGAT FCER1A -0.6399146399 0
## 2066 ATCTACTCAATAGCGG FCER1A -0.5710293606 0
## 2067 ACCCACTGTTAAGAAC FCER1A -0.6405858481 1
## 2068 ACATACGTCTGCTTGC FCER1A -0.4549672013 0
## 2069 CGTCTACGTTGAACTC FCER1A -0.1689508581 0
## 2070 ATTATCCCAGCAGTTT FCER1A -0.3655991295 0
## 2071 GAAACTCTCGTTACGA FCER1A -0.3900044640 0
## 2072 GATGAAACATCATCCC FCER1A -0.5448015370 0
## 2073 CACAGTATCTGTCCGT FCER1A -0.2117992612 0
## 2074 TGAAAGAAGGAGCGAG FCER1A -0.4862161780 0
## 2075 CCGGTAGAGACCGGAT FCER1A -0.5192861653 0
## 2076 TGCGGGTTCTAACCGA FCER1A 2.2080612720 1
## 2077 GGCGACTTCGCGCCAA FCER1A -0.4357249568 0
## 2078 GGGATGAAGTCGCCGT FCER1A -0.5460829926 0
## 2079 GATTCAGGTACAGACG FCER1A -0.4838301120 0
## 2080 TAGACCACAAGAAGAG FCER1A -0.4168616655 0
## 2081 AATCCAGGTCAGAGGT FCER1A 2.1857375833 1
## 2082 TGAGCCGCAATGGACG FCER1A -0.2438651735 0
## 2083 CACATAGGTACTCTCC FCER1A -0.2793145228 0
## 2084 CATGGCGAGCAATATG FCER1A 1.4631426052 1
## 2085 CAGTAACGTTATTCTC FCER1A -0.4040029173 1
## 2086 GCGAGAAGTTCCGTCT FCER1A -0.4547205194 0
## 2087 TTTACTGGTCCCTTGT FCER1A -0.3389765698 1
## 2088 ATCATGGCACGAAATA FCER1A -0.4076313003 0
## 2089 CGCCAAGAGGCAGTCA FCER1A -0.6796589427 0
## 2090 CGTCCATGTCCAGTAT FCER1A -0.5031815166 0
## 2091 TGGCGCATCCATTCTA FCER1A -0.3497672531 0
## 2092 CCCATACGTAGCTTGT FCER1A -0.2405592434 0
## 2093 GCATGCGGTGCTGTAT FCER1A -0.3756667419 0
## 2094 TTCTTAGCATGCTAGT FCER1A -0.2625336424 0
## 2095 TGCGCAGAGTGGACGT FCER1A -0.7655557142 1
## 2096 ATTATCCGTTGCTCCT FCER1A -0.6072001422 0
## 2097 AGAATAGAGACTAGGC FCER1A -0.5566203252 0
## 2098 CCTACACAGCTGCAAG FCER1A -0.5644437284 1
## 2099 GACAGAGAGTGCTGCC FCER1A -0.5462091600 0
## 2100 GTTCGGGTCCCAAGAT FCER1A -0.2403856375 0
## 2101 AGTAGTCGTAAGCACG FCER1A -0.3841279441 0
## 2102 CTCACACGTACCTACA FCER1A -0.7419914461 0
## 2103 GCAGTTAAGTGGGTTG FCER1A 1.2051557560 0
## 2104 GTCAAGTCAGCTCGAC FCER1A -0.2184239951 1
## 2105 GCTGCGATCCCTAACC FCER1A 0.5229620066 1
## 2106 GATCGTATCCCTAACC FCER1A -0.5309344485 0
## 2107 TGAGAGGTCCGTAGTA FCER1A -0.6479158738 0
## 2108 CTCGTCAGTGCACTTA FCER1A -0.4195853298 0
## 2109 AGCATACAGCAAATCA FCER1A -0.5323240876 0
## 2110 TCGGGACGTGTCAATC FCER1A -0.5347376182 0
## 2111 ATGCGATGTAAACACA FCER1A -0.3855731050 0
## 2112 CATGACACACAACGTT FCER1A -0.1007421851 0
## 2113 GCTTGAAGTGCTAGCC FCER1A -0.0455542276 0
## 2114 TTTGGTTTCTCTTATG FCER1A -0.4326313631 0
## 2115 ACACCCTGTGAAATCA FCER1A -0.1563240530 0
## 2116 ATCATGGTCCCTCAGT FCER1A -0.3743697492 0
## 2117 CCTCTGACAATCAGAA FCER1A -0.6837585421 0
## 2118 ACATACGAGACACTAA FCER1A -1.0210744935 0
## 2119 TCACAAGTCCGTAGGC FCER1A -0.7843970702 1
## 2120 GCAGTTAGTCCAGTGC FCER1A 2.5000000000 1
## 2121 AGTGAGGGTTACAGAA FCER1A -0.5578367316 0
## 2122 CACACAAGTAATCACC FCER1A -0.5944498025 0
## 2123 GATCGCGAGGCTAGAC FCER1A -0.3136154028 0
## 2124 CTCGTACTCCTTTCGG FCER1A -0.1880025854 0
## 2125 ATCCACCTCGGCGGTT FCER1A -0.4921747779 0
## 2126 GAAGCAGAGCTAGTTC FCER1A -0.6748870923 0
## 2127 CAGTCCTAGTGTCTCA FCER1A -0.3543742072 0
## 2128 CGCTTCACAATGGATA FCER1A -0.3323850699 0
## 2129 TCCCGATTCATATCGG FCER1A -0.4734158525 0
## 2130 TGTGGTACATATACCG FCER1A -0.3647676484 0
## 2131 TACCTTACACTACAGT FCER1A 0.6697795498 1
## 2132 GTAGGCCGTCCGTCAG FCER1A -0.5264317055 0
## 2133 CAGAATCCAATCAGAA FCER1A -0.4077606305 0
## 2134 GGATTACTCTGTGCAA FCER1A -0.5550457652 1
## 2135 GTCGTAAGTTTGTTTC FCER1A -0.3210489177 0
## 2136 GATCGTAAGCCAGTAG FCER1A -0.5645768708 0
## 2137 GACTACAGTTAAAGAC FCER1A -0.6542064496 0
## 2138 CATGACACAACACCTA FCER1A -0.7986735744 0
## 2139 CACCAGGTCACGCGGT FCER1A -0.3799705170 0
## 2140 GTCTTCGTCTGAGTGT FCER1A -0.2280675993 1
## 2141 CCTTCGAAGTGGGATC FCER1A -0.6913498017 0
## 2142 GTGCGGTGTCCTGCTT FCER1A -0.6049316078 0
## 2143 GTCACAACATGCCTTC FCER1A 1.3080291641 1
## 2144 CAGAGAGTCAGTCAGT FCER1A -0.6000728613 0
## 2145 GTGCGGTGTACTCTCC FCER1A -0.4738505021 0
## 2146 CAGCTAATCAAGATCC FCER1A 0.7187048885 1
## 2147 CAAGATCGTTGGGACA FCER1A -0.6796589427 0
## 2148 TTTATGCCATCACAAC FCER1A -0.5763361248 0
## 2149 CGGTTAATCCCAAGTA FCER1A 0.6945074051 0
## 2150 TAGCCGGTCCGTAGTA FCER1A 1.9953945064 1
## 2151 ACGAGCCGTGTTTGTG FCER1A -0.2981517516 0
## 2152 AGCATACCAAACCCAT FCER1A 0.9854783104 0
## 2153 GAAATGATCAACACTG FCER1A -0.6082159738 0
## 2154 TATCTCACATAACCTG FCER1A -0.4061823550 0
## 2155 CCGTACTCACTTCTGC FCER1A 2.5000000000 1
## 2156 CTAGAGTTCAGAGGTG FCER1A -0.4290101666 0
## 2157 CTGATAGCATACAGCT FCER1A -0.5042964934 0
## 2158 TCGAGGCCACGGTAGA FCER1A 2.5000000000 1
## 2159 GATCAGTTCACTTATC FCER1A -0.2936361119 0
## 2160 GTTTCTAAGCCCTAAT FCER1A -0.3860404340 0
## 2161 CAGCTGGAGGAATTAC FCER1A 2.3768909108 1
## 2162 AGAGTGGTCGATCCCT FCER1A -0.7937309132 0
## 2163 CATGGCGCAACTGCTA FCER1A -0.3846091421 0
## 2164 CTGGTCTGTATATGGA FCER1A 2.1137735867 1
## 2165 CGTCACTCACAGGAGT FCER1A -0.4793573178 0
## 2166 AACTGGTTCAACCAAC FCER1A 2.4546914257 1
## 2167 CCATTCGCAGGGAGAG FCER1A -0.4038021734 0
## 2168 CATCAGATCTTCAACT FCER1A -0.5514660813 0
## 2169 GAATGAATCAGGCAAG FCER1A -0.3116850846 0
## 2170 TGTCCCATCGAATGCT FCER1A -0.7354310795 0
## 2171 AGTGGGACAGCCAATT FCER1A -0.6917097928 0
## 2172 AGAGCTTTCACATGCA FCER1A -0.5116888572 0
## 2173 TGCGGGTTCTGCAGTA FCER1A 0.6916944859 0
## 2174 GTCGTAAGTCGGCACT FCER1A 0.0843967669 0
## 2175 CTCGAGGTCGGAGCAA FCER1A -0.5264798376 0
## 2176 CTACACCAGATGAGAG FCER1A 0.7721189491 0
## 2177 ACGGCCATCTTACCTA FCER1A -0.5724921225 0
## 2178 CCCAGTTCACACCGAC FCER1A 1.8375402795 1
## 2179 TCGGGACTCGGATGGA FCER1A 1.4668499357 1
## 2180 CATCGGGTCCCGACTT FCER1A -0.6365615373 1
## 2181 CTTAACTGTAAGGATT FCER1A -0.7573873464 0
## 2182 AACCATGAGCGTAATA FCER1A -0.6727433727 0
## 2183 TCAGATGGTCTTCTCG FCER1A -0.5802694216 0
## 2184 CTCACACTCCCAACGG FCER1A 0.7485706381 0
## 2185 CCATGTCAGGATGGAA FCER1A -0.3726022832 0
## 2186 GGGTCTGGTACTTGAC FCER1A -0.6183935022 0
## 2187 GGAACTTCACAGTCGC FCER1A -0.6646047956 0
## 2188 GACCTGGCACATCCAA FCER1A -0.4016626649 0
## 2189 CAGTCCTCAAGACACG FCER1A 1.3922435725 1
## 2190 AGATCTGCATATGGTC FCER1A -0.3696586144 0
## 2191 CATCAGAGTATTCTCT FCER1A 1.2662423842 0
## 2192 TGCACCTTCGATAGAA FCER1A -0.5508993935 0
## 2193 CCTACACTCCCAAGTA FCER1A -0.5562023099 0
## 2194 ACTTTCATCGTAGATC FCER1A 1.4978357781 1
## 2195 TTGCGTCCACCATGTA FCER1A -0.6758369245 0
## 2196 AAATGCCAGGTGCTAG FCER1A -0.2825424521 0
## 2197 ATGCGATGTCCATCCT FCER1A 1.3763303434 1
## 2198 CCAGCGAAGCCACTAT FCER1A -0.6242659948 0
## 2199 TACTTGTAGTGTACTC FCER1A -0.7596940187 0
## 2200 AGGGATGTCTCGCTTG FCER1A 2.2678602842 1
## 2201 TGTCCCAGTATTAGCC FCER1A -0.7938371246 0
## 2202 TGCTACCTCGCACTCT FCER1A 2.4367735243 0
## 2203 GTAACGTCAGTATAAG FCER1A 2.5000000000 1
## 2204 GCGCAACGTTCGTTGA FCER1A 2.5000000000 1
## 2205 GCGAGAACATGAGCGA FCER1A 1.9802260025 1
## 2206 TGCCCTAGTGCACCAC FCER1A 2.0037216186 1
## 2207 CTAGAGTGTAAACACA FCER1A -0.4224255816 0
## 2208 AGTAGTCCACCGGAAA FCER1A -0.4997841111 0
## 2209 CATATTCTCAGCGATT FCER1A 0.4651807734 0
## 2210 GAATGAAGTAACGACG FCER1A -0.3548181138 0
## 2211 GATCAGTAGTACTTGC FCER1A -0.5600434807 0
## 2212 CAAGAAACAGGATTGG FCER1A 2.5000000000 1
## 2213 CCTATTATCAACACTG FCER1A -0.5487445472 0
## 2214 CAGCAGCTCTGCGGCA FCER1A -0.4825162165 0
## 2215 ATAAGAGAGCTGCGAA FCER1A -0.7014814718 0
## 2216 AGATCTGCACCTATCC FCER1A -0.7666997388 0
## 2217 GACACGCGTAGAGCTG FCER1A -0.5797105269 0
## 2218 TACACGAAGCTAGGCA FCER1A -0.6885936605 0
## 2219 AACACGTTCCGAAGAG FCER1A -0.5298872244 0
## 2220 TTAACTCGTGTAATGA FCER1A 0.7414019662 1
## 2221 TGGCGCAGTTCAGACT FCER1A -0.4006850040 0
## 2222 CATCAGAGTCTAGTCA FCER1A -0.7849304635 1
## 2223 CTAGAGTAGCATGGCA FCER1A -0.9874085897 0
## 2224 TACGGTAAGCGTGAAC FCER1A -0.3242899161 0
## 2225 TGACTTTTCGGATGTT FCER1A -0.7829324708 1
## 2226 CTCACACTCCTACAGA FCER1A -0.5988822344 0
## 2227 CCGTACTCACTGAAGG FCER1A -0.2535430485 0
## 2228 ATAACGCGTGGAAAGA FCER1A -0.5618749809 0
## 2229 GCTTGAAAGCTAGGCA FCER1A 2.1704596138 1
## 2230 AAGTCTGGTGTTGGGA FCER1A -0.7337189698 0
## 2231 CGATCGGGTACAGCAG FCER1A -0.6589634997 0
## 2232 AGTAGTCTCGATGAGG FCER1A -0.4914929371 0
## 2233 CGACCTTCAGACGCTC FCER1A 2.5000000000 1
## 2234 GCATACACATGCAACT FCER1A -0.5970307260 0
## 2235 TCCCGATTCGCAGGCT FCER1A -0.2482791866 0
## 2236 TTAGGCAAGATCGATA FCER1A 2.5000000000 1
## 2237 TCGTACCAGGCAAAGA FCER1A -0.6825027266 0
## 2238 GGATGTTGTATAGGGC FCER1A -0.8360855612 0
## 2239 AATCCAGCAGAGTGTG FCER1A -0.4798176869 0
## 2240 CATGCCTCACGGCCAT FCER1A 2.5000000000 1
## 2241 CTCGAAACACATGACT FCER1A -0.8798512648 0
## 2242 CTGCCTAGTTGCGTTA FCER1A -0.7155699431 0
## 2243 GGCGACTAGACAGAGA FCER1A 1.5760032294 1
## 2244 TACAGTGGTGTAATGA FCER1A 2.0269252013 1
## 2245 ACGAGCCTCTTATCTG FCER1A -0.3017877627 0
## 2246 GGGAATGCAAATACAG FCER1A 0.8294732592 1
## 2247 TGCACCTGTACCGAGA FCER1A -0.8280331935 0
## 2248 ATCATCTTCAGTCAGT FCER1A -0.7191259111 0
## 2249 CATATTCGTACAGTTC FCER1A -0.8717396661 0
## 2250 GCATGATGTTCCACTC FCER1A -0.7753551248 0
## 2251 AAGGCAGTCACGACTA FCER1A -0.3854367062 0
## 2252 GAAACTCTCTATCCCG FCER1A -0.5575917487 0
## 2253 AGCATACTCTGCTGTC FCER1A -0.6016599252 1
## 2254 TGGGCGTCAGCGTTCG FCER1A 1.7238138727 1
## 2255 TCGTAGAGTTCGTCTC FCER1A 1.0130059478 0
## 2256 GACAGAGGTACCGCTG FCER1A 2.5000000000 1
## 2257 TCTCATACACATAACC FCER1A 0.4939083046 0
## 2258 TGGGCGTCATTGAGCT FCER1A -0.2637502344 0
## 2259 CATGACACATGTCTCC FCER1A -0.6919527660 0
## 2260 GAATAAGGTGCACGAA FCER1A 1.1611015155 1
## 2261 TGCGCAGCAAGCGAGT FCER1A -1.1358565093 0
## 2262 CTTCTCTCAGCCAGAA FCER1A -0.5028101924 0
## 2263 AAGCCGCAGTGGCACA FCER1A -0.8252281872 0
## 2264 CTCTACGAGTGGACGT FCER1A -0.5224945297 0
## 2265 GTCATTTTCTATCCCG FCER1A -0.6875948159 0
## 2266 CGAGCACAGCCACTAT FCER1A -0.6354892368 1
## 2267 AGTAGTCGTAACGACG FCER1A -0.8251770236 0
## 2268 GACGTGCAGAGGGATA FCER1A -0.2514583672 0
## 2269 GTCTTCGTCCAACCAA FCER1A -0.6038649330 0
## 2270 CAAGGCCTCGCCCTTA FCER1A -0.5645050114 0
## 2271 TGTGGTACATGGTTGT FCER1A -0.4604917051 0
## 2272 CCTCAGTTCGAATGCT FCER1A 1.0221235949 1
## 2273 ACCGTAATCTGAGGGA FCER1A 1.7155377086 1
## 2274 GTTAAGCCAGTTCATG FCER1A -0.7755091717 0
## 2275 CTGCCTATCAATCTCT FCER1A -0.7442151308 0
## 2276 GACGGCTTCTCCAACC FCER1A -0.8167245560 0
## 2277 TTTCCTCCAGTTCCCT FCER1A -0.7165702440 0
## 2278 GCGCCAAAGCCCTAAT FCER1A -0.4065300469 0
## 2279 CCACCTATCCCGACTT FCER1A 0.8380331252 1
## 2280 TTTATGCCAGGGCATA FCER1A 1.8612690806 1
## 2281 TACAGTGTCGCGGATC FCER1A -0.6035226871 1
## 2282 AGCTCTCCACCACGTG FCER1A -0.3538902370 0
## 2283 GTGGGTCCATTGAGCT FCER1A -0.4820943522 1
## 2284 GGGATGACAGACTCGC FCER1A -0.4706892345 0
## 2285 ACACCAAGTTCGGGCT FCER1A 1.5885129419 1
## 2286 TGATTTCAGCTATGCT FCER1A 1.6603179617 1
## 2287 TGGCCAGAGAGGGCTT FCER1A -0.6897355597 0
## 2288 TCGGTAAGTAAAGTCA FCER1A -0.6620020428 0
## 2289 TGAAAGAGTCCCTTGT FCER1A 2.5000000000 1
## 2290 CCGTGGATCGTTTATC FCER1A -0.9827059588 1
## 2291 GAACCTATCCTCAACC FCER1A -0.5884998149 0
## 2292 GCGCAGTCATCCAACA FCER1A 2.2878112330 1
## 2293 ACATGGTTCGCGCCAA FCER1A 1.5812018055 1
## 2294 CTTGGCTGTACGCACC FCER1A -0.3090450064 0
## 2295 AGATTGCAGGCCCGTT FCER1A -0.5615390429 0
## 2296 AGGCCGTGTTACGGAG FCER1A 2.5000000000 1
## 2297 GGTGTTAGTTAAGATG FCER1A -0.9821859628 0
## 2298 GGAATAATCCTGTAGA FCER1A 2.0247792816 1
## 2299 TATTACCGTATTAGCC FCER1A 0.8169109201 1
## 2300 ATAACGCGTTAGTGGG FCER1A -0.6396697858 0
## 2301 AAACGGGGTTATCCGA FCER1A 1.4063411171 0
## 2302 TGTGGTATCGTTTAGG FCER1A 1.7620462070 1
## 2303 ATCACGAGTATGAATG FCER1A -0.4413335985 1
## 2304 CAGCAGCTCACCTCGT FCER1A -0.8542432674 0
## 2305 CCAATCCGTATTACCG FCER1A 1.9165734119 1
## 2306 TTCTACATCACATAGC FCER1A -0.7167673877 0
## 2307 TGTCCCATCGTATCAG FCER1A -0.3918393833 0
## 2308 AGCTCTCAGTGTTTGC FCER1A -0.2856316142 0
## 2309 CAACCTCAGTAACCCT FCER1A -0.5160147142 0
## 2310 GTGGGTCAGGTAAACT FCER1A -0.3225335224 0
## 2311 TAAGTGCCACGTCAGC FCER1A -0.3533827272 1
## 2312 GACCTGGCAGCCACCA FCER1A -0.5347982890 0
## 2313 ACAGCCGCAGGATCGA FCER1A -0.6592937497 0
## 2314 AACTCCCCAGCTCGCA FCER1A -0.4414898022 0
## 2315 GGAAAGCGTCTCTCGT FCER1A -0.5754810884 0
## 2316 CGCTTCAAGCAGGTCA FCER1A 1.9291135919 1
## 2317 GATCGCGAGAAGGGTA FCER1A 2.2178741431 1
## 2318 AAGCCGCCAGGATTGG FCER1A 0.8065188401 1
## 2319 ATTGGACGTCGTGGCT FCER1A -0.5326289255 0
## 2320 CCCATACCACTAAGTC FCER1A -0.9245780378 0
## 2321 TCTCTAATCCCATTTA FCER1A 1.4213578734 1
## 2322 TCGTAGAGTGGTACAG FCER1A 0.7951176494 1
## 2323 AAACGGGAGAGACGAA FCER1A -0.8898202671 0
## 2324 GACTACATCACCACCT FCER1A -0.8700100124 0
## 2325 GAAACTCAGTTGAGTA FCER1A -0.7995340154 0
## 2326 CCCTCCTTCCTCCTAG FCER1A 0.5812678975 1
## 2327 GCGACCATCACGGTTA FCER1A -0.2727770014 0
## 2328 TCTCTAAAGAGTCGGT FCER1A 1.4185714270 1
## 2329 GGCTCGATCTCACATT FCER1A -0.2002256217 0
## 2330 CTGATAGAGGCAGGTT FCER1A -0.3351798743 1
## 2331 CATGCCTAGGAGTTTA FCER1A -0.3915032214 1
## 2332 TGGCTGGTCAGCCTAA FCER1A -0.7131547193 0
## 2333 TCAGATGTCGTTACAG FCER1A -0.7827438603 0
## 2334 CAGCTGGGTTATGTGC FCER1A -0.5789524862 0
## 2335 GGAACTTAGTCGTACT FCER1A -0.7861034381 0
## 2336 CCGGGATCACCGGAAA FCER1A 2.2398445252 1
## 2337 CCTTCGATCAAAGACA FCER1A -0.6410654650 0
## 2338 CGAGAAGGTATCGCAT FCER1A 1.2553949757 1
## 2339 CCTAAAGAGACTGGGT FCER1A -0.2698968883 0
## 2340 CAGATCACATTGGCGC FCER1A 2.2835836052 1
## 2341 CTAGCCTAGCTGGAAC FCER1A -0.1759810200 1
## 2342 ATTGGTGTCTCGTATT FCER1A 0.5149816036 0
## 2343 GGGAATGTCAAAGTAG FCER1A 1.4397058197 1
## 2344 CCATGTCCACGGCCAT FCER1A -0.6960471635 0
## 2345 GGCAATTCATATGGTC FCER1A -0.3645022441 0
## 2346 CTGTGCTCATGTCCTC FCER1A -0.5544283511 0
## 2347 TTAACTCCAACGCACC FCER1A -0.7812248768 0
## 2348 CGAACATAGCGGCTTC FCER1A -0.5811897028 0
## 2349 TCGCGTTAGGCACATG FCER1A 1.4574560341 1
## 2350 GGGTTGCCAAACTGCT FCER1A 0.6458226961 0
## 2351 ATAAGAGCAGGTGCCT FCER1A 1.7978404301 1
## 2352 CGGACACGTATTCGTG FCER1A -1.0406928300 0
## 2353 CTGATAGTCACGACTA FCER1A -0.3561779405 0
## 2354 GAACATCGTGAGTATA FCER1A -0.7985145559 0
## 2355 TGCTACCAGTGGTCCC FCER1A -0.6191958077 0
## 2356 GCTGGGTAGTCTTGCA FCER1A -0.8621957790 0
## 2357 TACGGATGTCTAACGT FCER1A -1.0480348331 0
## 2358 TGGGCGTCAATGGATA FCER1A 1.9067482499 1
## 2359 CTGCTGTCATTTGCTT FCER1A -0.6811455136 0
## 2360 GGGCATCAGCAGCCTC FCER1A 2.2514368876 1
## 2361 CGTGAGCAGACTAGAT FCER1A -0.4789466612 0
## 2362 CAGCGACCACACCGAC FCER1A -0.8945118683 0
## 2363 CCCAATCCAGTTAACC FCER1A -0.8420671922 0
## 2364 CAGCGACTCAGCGACC FCER1A -0.8717009327 0
## 2365 GAGCAGAAGCTATGCT FCER1A -0.8411549421 0
## 2366 CTCTGGTTCACTTCAT FCER1A -0.4087280596 0
## 2367 CGCGTTTCAGCTGTGC FCER1A 1.3031707953 1
## 2368 GGACGTCCACCTCGGA FCER1A -0.5410248461 0
## 2369 TAGTTGGAGAGTTGGC FCER1A -0.7096193448 0
## 2370 ATTGGTGTCGGAATCT FCER1A -0.6315505457 0
## 2371 GAATGAACACGGCCAT FCER1A -0.7189573292 0
## 2372 GTGCATACAAGGTGTG FCER1A -0.3852972819 0
## 2373 GGAATAAGTCGGCACT FCER1A -1.1138169105 0
## 2374 ACCCACTTCCAAAGTC FCER1A -0.4744645295 0
## 2375 ACTATCTCAATTCCTT FCER1A -0.7967546408 1
## 2376 AGCATACAGTGGGATC FCER1A -0.8025009034 0
## 2377 GTCATTTTCCGCATCT HLA-DQA1 -0.5968985062 1
## 2378 ATAAGAGAGGAGTTGC HLA-DQA1 1.3635123897 1
## 2379 CATTATCCATGGTCTA HLA-DQA1 0.4565060886 0
## 2380 CTTAGGAGTGGCGAAT HLA-DQA1 -0.7955586981 0
## 2381 CATCAGAAGCACCGCT HLA-DQA1 0.8472934910 0
## 2382 GCGGGTTAGTAGCCGA HLA-DQA1 -0.8639852643 0
## 2383 CAGAGAGAGCGCCTTG HLA-DQA1 0.6520855724 0
## 2384 CTGAAGTCAGACACTT HLA-DQA1 -0.0141175932 0
## 2385 GGACGTCCAGGTGCCT HLA-DQA1 0.5402227061 1
## 2386 AAAGCAAGTGGTGTAG HLA-DQA1 0.9873316950 0
## 2387 TCTCATACAGGGCATA HLA-DQA1 0.0541845579 0
## 2388 AACTCAGGTACTCGCG HLA-DQA1 0.2282610980 0
## 2389 CACATTTGTGAGTATA HLA-DQA1 1.2655312628 0
## 2390 ACTTTCAAGGTGTTAA HLA-DQA1 0.0546924206 1
## 2391 TGCCCATCAGACGCAA HLA-DQA1 1.2597722959 0
## 2392 CTAAGACCAATGCCAT HLA-DQA1 -0.9881269188 0
## 2393 CGGAGCTCATTTGCTT HLA-DQA1 -0.0578927100 0
## 2394 GAGCAGATCGACGGAA HLA-DQA1 0.9511452680 0
## 2395 TAAACCGAGATCGATA HLA-DQA1 -1.0550706102 0
## 2396 GTCTCGTGTACATCCA HLA-DQA1 0.5593038065 0
## 2397 GTATCTTAGACCCACC HLA-DQA1 0.7529646895 1
## 2398 GAGCAGAAGAGCCTAG HLA-DQA1 1.8704121669 1
## 2399 GTGCAGCTCACATAGC HLA-DQA1 0.0255890048 0
## 2400 CCTATTAGTAAACCTC HLA-DQA1 -1.0929575932 0
## 2401 AGAGTGGAGTTTAGGA HLA-DQA1 0.5265640112 0
## 2402 TACGGGCAGGTGATTA HLA-DQA1 0.2682061025 0
## 2403 ACTATCTCAATCTACG HLA-DQA1 -1.0464179524 0
## 2404 CGAGCCATCAGGCAAG HLA-DQA1 0.6356196710 0
## 2405 CGAATGTCAATTGCTG HLA-DQA1 -0.1143588056 0
## 2406 TACGGTATCGTTACGA HLA-DQA1 0.9043757591 0
## 2407 CTGTGCTCAAGGTGTG HLA-DQA1 0.1353210649 0
## 2408 CCATGTCGTAACGACG HLA-DQA1 0.6099190639 0
## 2409 TGCTGCTAGACACTAA HLA-DQA1 -1.0564389439 0
## 2410 ACGGGTCTCGCTTAGA HLA-DQA1 0.1942939657 0
## 2411 ACGAGGAAGGCTAGCA HLA-DQA1 0.1755428650 0
## 2412 GCACTCTGTCGGCACT HLA-DQA1 -0.6303440879 0
## 2413 ATCATGGGTTTAAGCC HLA-DQA1 -1.1923940256 0
## 2414 GCATGTAGTAAAGGAG HLA-DQA1 -0.7251674245 0
## 2415 CAACTAGAGTGGGCTA HLA-DQA1 -0.9382720530 0
## 2416 AACACGTCAATCAGAA HLA-DQA1 2.5000000000 1
## 2417 AAAGTAGGTGTCTGAT HLA-DQA1 1.5085600590 1
## 2418 CTCATTATCGCTGATA HLA-DQA1 -0.1544068719 0
## 2419 TACTCGCCAACGCACC HLA-DQA1 1.5457848306 0
## 2420 GGACATTGTCCTGCTT HLA-DQA1 2.0068294079 1
## 2421 ACTGAACAGAGCTGGT HLA-DQA1 -1.0417467438 0
## 2422 CTCGGGAAGTGCAAGC HLA-DQA1 -0.9958763277 0
## 2423 AGCTCCTAGCATGGCA HLA-DQA1 0.9603324366 0
## 2424 TATTACCGTCGACTGC HLA-DQA1 0.0660012995 0
## 2425 GAACGGACATTTCACT HLA-DQA1 0.0202036975 0
## 2426 CACAAACTCCCGGATG HLA-DQA1 -1.2394452916 0
## 2427 GCTCCTAAGGGAGTAA HLA-DQA1 -0.0874209986 0
## 2428 GACTAACCATCACGTA HLA-DQA1 2.3154641580 1
## 2429 TACTCGCTCTTAACCT HLA-DQA1 0.4771933711 0
## 2430 AGGCCGTCAGGAACGT HLA-DQA1 -0.1492454792 0
## 2431 CCACTACAGTGCTGCC HLA-DQA1 1.2367560078 0
## 2432 ATCCACCCAAGCCGTC HLA-DQA1 -0.0895817885 0
## 2433 GAGTCCGAGACTGTAA HLA-DQA1 0.1292011603 0
## 2434 AAGCCGCCAGAAGCAC HLA-DQA1 -1.1329470973 0
## 2435 GACACGCCAGATTGCT HLA-DQA1 0.2708447316 0
## 2436 CGACTTCAGGCTACGA HLA-DQA1 -0.0871172679 0
## 2437 GGGTTGCCAGTAAGCG HLA-DQA1 0.9620568126 0
## 2438 AGTGAGGGTCAGAATA HLA-DQA1 -1.0626877809 0
## 2439 GATCTAGCAGCCACCA HLA-DQA1 -0.1109005625 0
## 2440 ACGAGGACAAGACGTG HLA-DQA1 -0.9504607247 0
## 2441 CATATGGCAAGCCGCT HLA-DQA1 -0.9093265146 0
## 2442 TTATGCTCAGACGCTC HLA-DQA1 -1.3391917099 0
## 2443 AGTGTCAAGTCGCCGT HLA-DQA1 0.0282517342 0
## 2444 AAGGCAGGTCTGCCAG HLA-DQA1 0.1083014795 0
## 2445 TCAGGATAGCCCGAAA HLA-DQA1 1.2848915809 0
## 2446 CCACTACCACTAGTAC HLA-DQA1 -0.1020628391 1
## 2447 AGCAGCCTCGCCAAAT HLA-DQA1 0.6097249442 0
## 2448 CTGCCTATCCATGCTC HLA-DQA1 1.0412251938 0
## 2449 GCTGCAGCATAGTAAG HLA-DQA1 0.4777869365 0
## 2450 GCGCAGTTCAGTTCGA HLA-DQA1 -1.0310125510 1
## 2451 GGGCATCGTAGCGCTC HLA-DQA1 -1.0925416170 0
## 2452 CTAATGGGTTACGTCA HLA-DQA1 0.4214341980 0
## 2453 ATTCTACGTTATCGGT HLA-DQA1 -1.4280108870 0
## 2454 GAAATGATCAGCTGGC HLA-DQA1 -1.0848268418 0
## 2455 TGCTACCTCGTCCAGG HLA-DQA1 -1.0849802791 0
## 2456 ACATGGTCACTTACGA HLA-DQA1 -1.2814658923 0
## 2457 ACTTTCAAGCGTTGCC HLA-DQA1 -0.0238334103 0
## 2458 CCTACACGTAAACCTC HLA-DQA1 0.0184039972 0
## 2459 ATTGGTGAGATCCCAT HLA-DQA1 -0.9319082422 0
## 2460 CCGGGATCACAGACAG HLA-DQA1 0.9437805418 0
## 2461 CAGTAACTCTCTTGAT HLA-DQA1 -1.2456895781 0
## 2462 ATCTACTCAATAGCGG HLA-DQA1 -1.2172280673 0
## 2463 ACCCACTGTTAAGAAC HLA-DQA1 1.4512118644 1
## 2464 ACATACGTCTGCTTGC HLA-DQA1 -1.0726756176 0
## 2465 CGTCTACGTTGAACTC HLA-DQA1 0.2725828201 0
## 2466 ATTATCCCAGCAGTTT HLA-DQA1 0.1871167482 0
## 2467 GAAACTCTCGTTACGA HLA-DQA1 -1.0533481829 0
## 2468 GATGAAACATCATCCC HLA-DQA1 0.5924878675 0
## 2469 CACAGTATCTGTCCGT HLA-DQA1 -0.8581319288 0
## 2470 TGAAAGAAGGAGCGAG HLA-DQA1 0.0929497896 0
## 2471 CCGGTAGAGACCGGAT HLA-DQA1 -0.0427298303 0
## 2472 TGCGGGTTCTAACCGA HLA-DQA1 0.2126363633 1
## 2473 GGCGACTTCGCGCCAA HLA-DQA1 -1.0500777230 0
## 2474 GGGATGAAGTCGCCGT HLA-DQA1 -1.1624146531 0
## 2475 GATTCAGGTACAGACG HLA-DQA1 0.5600474892 0
## 2476 TAGACCACAAGAAGAG HLA-DQA1 0.6265684585 0
## 2477 AATCCAGGTCAGAGGT HLA-DQA1 0.5203465467 1
## 2478 TGAGCCGCAATGGACG HLA-DQA1 -0.9025968874 0
## 2479 CACATAGGTACTCTCC HLA-DQA1 -0.9228116584 0
## 2480 CATGGCGAGCAATATG HLA-DQA1 1.8827182667 1
## 2481 CAGTAACGTTATTCTC HLA-DQA1 1.5821361676 1
## 2482 GCGAGAAGTTCCGTCT HLA-DQA1 -1.1112570897 0
## 2483 TTTACTGGTCCCTTGT HLA-DQA1 -1.0072447567 1
## 2484 ATCATGGCACGAAATA HLA-DQA1 -1.0424663920 0
## 2485 CGCCAAGAGGCAGTCA HLA-DQA1 -1.2767274948 0
## 2486 CGTCCATGTCCAGTAT HLA-DQA1 -1.1152853423 0
## 2487 TGGCGCATCCATTCTA HLA-DQA1 -0.9858709841 0
## 2488 CCCATACGTAGCTTGT HLA-DQA1 -0.9562365916 0
## 2489 GCATGCGGTGCTGTAT HLA-DQA1 -1.0410562883 0
## 2490 TTCTTAGCATGCTAGT HLA-DQA1 -0.9333885334 0
## 2491 TGCGCAGAGTGGACGT HLA-DQA1 -0.1373648245 1
## 2492 ATTATCCGTTGCTCCT HLA-DQA1 0.1286645193 0
## 2493 AGAATAGAGACTAGGC HLA-DQA1 -0.0176393395 0
## 2494 CCTACACAGCTGCAAG HLA-DQA1 -0.0180749540 1
## 2495 GACAGAGAGTGCTGCC HLA-DQA1 -1.1621408651 0
## 2496 GTTCGGGTCCCAAGAT HLA-DQA1 1.2249364830 0
## 2497 AGTAGTCGTAAGCACG HLA-DQA1 0.6800931901 0
## 2498 CTCACACGTACCTACA HLA-DQA1 -0.1156718905 0
## 2499 GCAGTTAAGTGGGTTG HLA-DQA1 -0.7882217928 0
## 2500 GTCAAGTCAGCTCGAC HLA-DQA1 -0.8771429875 1
## 2501 GCTGCGATCCCTAACC HLA-DQA1 1.2970197095 1
## 2502 GATCGTATCCCTAACC HLA-DQA1 -1.1496850942 0
## 2503 TGAGAGGTCCGTAGTA HLA-DQA1 -1.2572275760 0
## 2504 CTCGTCAGTGCACTTA HLA-DQA1 -1.0485540452 0
## 2505 AGCATACAGCAAATCA HLA-DQA1 -1.1555774615 0
## 2506 TCGGGACGTGTCAATC HLA-DQA1 0.0183084510 0
## 2507 ATGCGATGTAAACACA HLA-DQA1 -1.0380481266 0
## 2508 CATGACACACAACGTT HLA-DQA1 -0.7430385565 0
## 2509 GCTTGAAGTGCTAGCC HLA-DQA1 0.5176917938 0
## 2510 TTTGGTTTCTCTTATG HLA-DQA1 0.0835457242 0
## 2511 ACACCCTGTGAAATCA HLA-DQA1 0.4946934897 0
## 2512 ATCATGGTCCCTCAGT HLA-DQA1 -1.0000244765 0
## 2513 CCTCTGACAATCAGAA HLA-DQA1 -1.2565070725 0
## 2514 ACATACGAGACACTAA HLA-DQA1 0.2425850043 0
## 2515 TCACAAGTCCGTAGGC HLA-DQA1 1.5244106409 1
## 2516 GCAGTTAGTCCAGTGC HLA-DQA1 1.3974175934 1
## 2517 AGTGAGGGTTACAGAA HLA-DQA1 -1.1457761351 0
## 2518 CACACAAGTAATCACC HLA-DQA1 -1.2138701786 0
## 2519 GATCGCGAGGCTAGAC HLA-DQA1 -0.9400600183 0
## 2520 CTCGTACTCCTTTCGG HLA-DQA1 0.4223209267 0
## 2521 ATCCACCTCGGCGGTT HLA-DQA1 -1.0699872767 0
## 2522 GAAGCAGAGCTAGTTC HLA-DQA1 0.0248313841 0
## 2523 CAGTCCTAGTGTCTCA HLA-DQA1 0.2887429111 0
## 2524 CGCTTCACAATGGATA HLA-DQA1 -0.9597177288 0
## 2525 TCCCGATTCATATCGG HLA-DQA1 0.0831134526 0
## 2526 TGTGGTACATATACCG HLA-DQA1 -0.9885974586 0
## 2527 TACCTTACACTACAGT HLA-DQA1 -1.2713928966 1
## 2528 GTAGGCCGTCCGTCAG HLA-DQA1 -1.1349983071 0
## 2529 CAGAATCCAATCAGAA HLA-DQA1 0.1671629837 0
## 2530 GGATTACTCTGTGCAA HLA-DQA1 1.7982198851 1
## 2531 GTCGTAAGTTTGTTTC HLA-DQA1 0.2500574770 0
## 2532 GATCGTAAGCCAGTAG HLA-DQA1 -1.1635360892 0
## 2533 GACTACAGTTAAAGAC HLA-DQA1 0.8791844767 0
## 2534 CATGACACAACACCTA HLA-DQA1 -0.0106361468 0
## 2535 CACCAGGTCACGCGGT HLA-DQA1 -0.9846353679 0
## 2536 GTCTTCGTCTGAGTGT HLA-DQA1 -0.8545458300 1
## 2537 CCTTCGAAGTGGGATC HLA-DQA1 -1.2619678317 0
## 2538 GTGCGGTGTCCTGCTT HLA-DQA1 -1.1810910671 0
## 2539 GTCACAACATGCCTTC HLA-DQA1 0.5508487739 1
## 2540 CAGAGAGTCAGTCAGT HLA-DQA1 0.0241695920 0
## 2541 GTGCGGTGTACTCTCC HLA-DQA1 0.1318154757 0
## 2542 CAGCTAATCAAGATCC HLA-DQA1 0.0139394111 1
## 2543 CAAGATCGTTGGGACA HLA-DQA1 -1.2767274948 0
## 2544 TTTATGCCATCACAAC HLA-DQA1 0.6344857948 0
## 2545 CGGTTAATCCCAAGTA HLA-DQA1 0.8383318834 0
## 2546 TAGCCGGTCCGTAGTA HLA-DQA1 1.1923332473 1
## 2547 ACGAGCCGTGTTTGTG HLA-DQA1 1.1671365652 0
## 2548 AGCATACCAAACCCAT HLA-DQA1 0.2429651722 0
## 2549 GAAATGATCAACACTG HLA-DQA1 0.9640022514 0
## 2550 TATCTCACATAACCTG HLA-DQA1 0.2082114110 0
## 2551 CCGTACTCACTTCTGC HLA-DQA1 0.7059706242 1
## 2552 CTAGAGTTCAGAGGTG HLA-DQA1 -1.0462747519 0
## 2553 CTGATAGCATACAGCT HLA-DQA1 -1.1185119801 0
## 2554 TCGAGGCCACGGTAGA HLA-DQA1 1.7447432503 1
## 2555 GATCAGTTCACTTATC HLA-DQA1 -0.9522165530 0
## 2556 GTTTCTAAGCCCTAAT HLA-DQA1 -1.0261784854 0
## 2557 CAGCTGGAGGAATTAC HLA-DQA1 0.7670688272 1
## 2558 AGAGTGGTCGATCCCT HLA-DQA1 -0.1072974203 0
## 2559 CATGGCGCAACTGCTA HLA-DQA1 -1.0221840309 0
## 2560 CTGGTCTGTATATGGA HLA-DQA1 2.1166754124 1
## 2561 CGTCACTCACAGGAGT HLA-DQA1 0.1393393091 0
## 2562 AACTGGTTCAACCAAC HLA-DQA1 1.2956354011 1
## 2563 CCATTCGCAGGGAGAG HLA-DQA1 1.1792203873 0
## 2564 CATCAGATCTTCAACT HLA-DQA1 0.9984026391 0
## 2565 GAATGAATCAGGCAAG HLA-DQA1 0.2650569440 0
## 2566 TGTCCCATCGAATGCT HLA-DQA1 -0.0417353473 0
## 2567 AGTGGGACAGCCAATT HLA-DQA1 0.0132550139 0
## 2568 AGAGCTTTCACATGCA HLA-DQA1 0.7182392559 0
## 2569 TGCGGGTTCTGCAGTA HLA-DQA1 -1.2758568703 0
## 2570 GTCGTAAGTCGGCACT HLA-DQA1 -0.6118488585 0
## 2571 CTCGAGGTCGGAGCAA HLA-DQA1 0.1429413429 0
## 2572 CTACACCAGATGAGAG HLA-DQA1 0.0869138147 0
## 2573 ACGGCCATCTTACCTA HLA-DQA1 -1.1566114566 0
## 2574 CCCAGTTCACACCGAC HLA-DQA1 0.4525721934 1
## 2575 TCGGGACTCGGATGGA HLA-DQA1 1.0784689192 1
## 2576 CATCGGGTCCCGACTT HLA-DQA1 0.6748874184 1
## 2577 CTTAACTGTAAGGATT HLA-DQA1 1.1395057283 0
## 2578 AACCATGAGCGTAATA HLA-DQA1 1.1862644358 0
## 2579 TCAGATGGTCTTCTCG HLA-DQA1 -1.1602071687 0
## 2580 CTCACACTCCCAACGG HLA-DQA1 -1.2429850331 0
## 2581 CCATGTCAGGATGGAA HLA-DQA1 -0.9723109648 0
## 2582 GGGTCTGGTACTTGAC HLA-DQA1 -1.2038214307 0
## 2583 GGAACTTCACAGTCGC HLA-DQA1 -1.2336983355 0
## 2584 GACCTGGCACATCCAA HLA-DQA1 0.8148973345 0
## 2585 CAGTCCTCAAGACACG HLA-DQA1 1.2608021125 1
## 2586 AGATCTGCATATGGTC HLA-DQA1 0.3215244372 0
## 2587 CATCAGAGTATTCTCT HLA-DQA1 -0.0025841862 0
## 2588 TGCACCTTCGATAGAA HLA-DQA1 -1.1414830630 0
## 2589 CCTACACTCCCAAGTA HLA-DQA1 -1.1561141268 0
## 2590 ACTTTCATCGTAGATC HLA-DQA1 1.6843932805 1
## 2591 TTGCGTCCACCATGTA HLA-DQA1 -1.2511367779 0
## 2592 AAATGCCAGGTGCTAG HLA-DQA1 -0.9210649700 0
## 2593 ATGCGATGTCCATCCT HLA-DQA1 1.4437090141 1
## 2594 CCAGCGAAGCCACTAT HLA-DQA1 0.6595502452 0
## 2595 TACTTGTAGTGTACTC HLA-DQA1 -1.3440354591 0
## 2596 AGGGATGTCTCGCTTG HLA-DQA1 0.6478775963 1
## 2597 TGTCCCAGTATTAGCC HLA-DQA1 -0.1040302356 0
## 2598 TGCTACCTCGCACTCT HLA-DQA1 -1.4700422385 0
## 2599 GTAACGTCAGTATAAG HLA-DQA1 0.4614867426 1
## 2600 GCGCAACGTTCGTTGA HLA-DQA1 1.0964487062 1
## 2601 GCGAGAACATGAGCGA HLA-DQA1 0.5819878753 1
## 2602 TGCCCTAGTGCACCAC HLA-DQA1 0.0594606484 1
## 2603 CTAGAGTGTAAACACA HLA-DQA1 0.3361748275 0
## 2604 AGTAGTCCACCGGAAA HLA-DQA1 0.2018912750 0
## 2605 CATATTCTCAGCGATT HLA-DQA1 0.9649707789 0
## 2606 GAATGAAGTAACGACG HLA-DQA1 -0.9488932982 0
## 2607 GATCAGTAGTACTTGC HLA-DQA1 0.1512738258 0
## 2608 CAAGAAACAGGATTGG HLA-DQA1 0.1645453215 1
## 2609 CCTATTATCAACACTG HLA-DQA1 -1.1514505800 0
## 2610 CAGCAGCTCTGCGGCA HLA-DQA1 0.2448439895 0
## 2611 ATAAGAGAGCTGCGAA HLA-DQA1 1.6401678177 0
## 2612 AGATCTGCACCTATCC HLA-DQA1 0.5166226017 0
## 2613 GACACGCGTAGAGCTG HLA-DQA1 0.6622294505 0
## 2614 TACACGAAGCTAGGCA HLA-DQA1 -1.2500103388 0
## 2615 AACACGTTCCGAAGAG HLA-DQA1 -1.1287144429 0
## 2616 TTAACTCGTGTAATGA HLA-DQA1 0.9073359208 1
## 2617 TGGCGCAGTTCAGACT HLA-DQA1 0.8200956457 0
## 2618 CATCAGAGTCTAGTCA HLA-DQA1 1.2866382953 1
## 2619 CTAGAGTAGCATGGCA HLA-DQA1 -1.5129659596 0
## 2620 TACGGTAAGCGTGAAC HLA-DQA1 0.9462910351 0
## 2621 TGACTTTTCGGATGTT HLA-DQA1 1.3365638395 1
## 2622 CTCACACTCCTACAGA HLA-DQA1 1.2814677929 0
## 2623 CCGTACTCACTGAAGG HLA-DQA1 0.8555606701 0
## 2624 ATAACGCGTGGAAAGA HLA-DQA1 -1.1779475051 0
## 2625 GCTTGAAAGCTAGGCA HLA-DQA1 1.9826980768 1
## 2626 AAGTCTGGTGTTGGGA HLA-DQA1 -0.0113211184 0
## 2627 CGATCGGGTACAGCAG HLA-DQA1 1.7532992478 0
## 2628 AGTAGTCTCGATGAGG HLA-DQA1 0.2098186517 0
## 2629 CGACCTTCAGACGCTC HLA-DQA1 1.8447790740 1
## 2630 GCATACACATGCAACT HLA-DQA1 -1.1521286199 0
## 2631 TCCCGATTCGCAGGCT HLA-DQA1 0.4921224960 0
## 2632 TTAGGCAAGATCGATA HLA-DQA1 1.6225044651 1
## 2633 TCGTACCAGGCAAAGA HLA-DQA1 -1.2516057419 0
## 2634 GGATGTTGTATAGGGC HLA-DQA1 -0.1248284199 0
## 2635 AATCCAGCAGAGTGTG HLA-DQA1 -1.0551191587 0
## 2636 CATGCCTCACGGCCAT HLA-DQA1 0.1860561807 1
## 2637 CTCGAAACACATGACT HLA-DQA1 0.4760319429 0
## 2638 CTGCCTAGTTGCGTTA HLA-DQA1 -1.2571990780 0
## 2639 GGCGACTAGACAGAGA HLA-DQA1 1.4338970715 1
## 2640 TACAGTGGTGTAATGA HLA-DQA1 -1.2220511522 1
## 2641 ACGAGCCTCTTATCTG HLA-DQA1 1.3063213746 0
## 2642 GGGAATGCAAATACAG HLA-DQA1 0.1516537060 1
## 2643 TGCACCTGTACCGAGA HLA-DQA1 -0.0777449132 0
## 2644 ATCATCTTCAGTCAGT HLA-DQA1 -1.2668749310 0
## 2645 CATATTCGTACAGTTC HLA-DQA1 -1.4020538732 0
## 2646 GCATGATGTTCCACTC HLA-DQA1 -0.0247672083 0
## 2647 AAGGCAGTCACGACTA HLA-DQA1 -0.9674804212 0
## 2648 GAAACTCTCTATCCCG HLA-DQA1 -1.1330734454 0
## 2649 AGCATACTCTGCTGTC HLA-DQA1 1.0086016268 1
## 2650 TGGGCGTCAGCGTTCG HLA-DQA1 1.3126874368 1
## 2651 TCGTAGAGTTCGTCTC HLA-DQA1 0.2857597377 0
## 2652 GACAGAGGTACCGCTG HLA-DQA1 1.5222803874 1
## 2653 TCTCATACACATAACC HLA-DQA1 -1.4444401392 0
## 2654 TGGGCGTCATTGAGCT HLA-DQA1 -0.8550363641 0
## 2655 CATGACACATGTCTCC HLA-DQA1 -1.2628962383 0
## 2656 GAATAAGGTGCACGAA HLA-DQA1 0.7845189891 1
## 2657 TGCGCAGCAAGCGAGT HLA-DQA1 -1.6202134295 0
## 2658 CTTCTCTCAGCCAGAA HLA-DQA1 -1.0900832454 0
## 2659 AAGCCGCAGTGGCACA HLA-DQA1 -1.3551670377 0
## 2660 CTCTACGAGTGGACGT HLA-DQA1 0.2696724624 0
## 2661 GTCATTTTCTATCCCG HLA-DQA1 -1.2314054937 0
## 2662 CGAGCACAGCCACTAT HLA-DQA1 1.3262899746 1
## 2663 AGTAGTCGTAACGACG HLA-DQA1 0.5215099424 0
## 2664 GACGTGCAGAGGGATA HLA-DQA1 -0.8805779959 0
## 2665 GTCTTCGTCCAACCAA HLA-DQA1 -1.1779077951 0
## 2666 CAAGGCCTCGCCCTTA HLA-DQA1 1.3455114784 0
## 2667 TGTGGTACATGGTTGT HLA-DQA1 -1.0167700816 0
## 2668 CCTCAGTTCGAATGCT HLA-DQA1 0.6820754298 1
## 2669 ACCGTAATCTGAGGGA HLA-DQA1 0.6226914544 1
## 2670 GTTAAGCCAGTTCATG HLA-DQA1 -1.3284306344 0
## 2671 CTGCCTATCAATCTCT HLA-DQA1 -1.2857230863 0
## 2672 GACGGCTTCTCCAACC HLA-DQA1 -1.3507256897 0
## 2673 TTTCCTCCAGTTCCCT HLA-DQA1 0.0034969134 0
## 2674 GCGCCAAAGCCCTAAT HLA-DQA1 -1.0026747359 0
## 2675 CCACCTATCCCGACTT HLA-DQA1 1.0632001173 1
## 2676 TTTATGCCAGGGCATA HLA-DQA1 2.0956642040 1
## 2677 TACAGTGTCGCGGATC HLA-DQA1 0.2098201997 1
## 2678 AGCTCTCCACCACGTG HLA-DQA1 -0.9355775025 0
## 2679 GTGGGTCCATTGAGCT HLA-DQA1 1.5982201709 1
## 2680 GGGATGACAGACTCGC HLA-DQA1 -1.0396661744 0
## 2681 ACACCAAGTTCGGGCT HLA-DQA1 1.4376871275 1
## 2682 TGATTTCAGCTATGCT HLA-DQA1 0.5582310557 1
## 2683 TGGCCAGAGAGGGCTT HLA-DQA1 0.5742212030 0
## 2684 TCGGTAAGTAAAGTCA HLA-DQA1 0.9602281230 0
## 2685 TGAAAGAGTCCCTTGT HLA-DQA1 0.4360557586 1
## 2686 CCGTGGATCGTTTATC HLA-DQA1 -1.4783595607 1
## 2687 GAACCTATCCTCAACC HLA-DQA1 -1.1551137193 0
## 2688 GCGCAGTCATCCAACA HLA-DQA1 1.2811328919 1
## 2689 ACATGGTTCGCGCCAA HLA-DQA1 1.4622372283 1
## 2690 CTTGGCTGTACGCACC HLA-DQA1 -0.9252157260 0
## 2691 AGATTGCAGGCCCGTT HLA-DQA1 -1.1410685589 0
## 2692 AGGCCGTGTTACGGAG HLA-DQA1 2.5000000000 1
## 2693 GGTGTTAGTTAAGATG HLA-DQA1 -1.4921172262 0
## 2694 GGAATAATCCTGTAGA HLA-DQA1 0.4335109186 1
## 2695 TATTACCGTATTAGCC HLA-DQA1 0.1485033290 1
## 2696 ATAACGCGTTAGTGGG HLA-DQA1 0.1495137757 0
## 2697 AAACGGGGTTATCCGA HLA-DQA1 0.1438823723 0
## 2698 TGTGGTATCGTTTAGG HLA-DQA1 1.0126603824 1
## 2699 ATCACGAGTATGAATG HLA-DQA1 -0.9882482686 1
## 2700 CAGCAGCTCACCTCGT HLA-DQA1 -0.0762932003 0
## 2701 CCAATCCGTATTACCG HLA-DQA1 0.8928462136 1
## 2702 TTCTACATCACATAGC HLA-DQA1 0.1445481926 0
## 2703 TGTCCCATCGTATCAG HLA-DQA1 0.3879848483 0
## 2704 AGCTCTCAGTGTTTGC HLA-DQA1 -0.8771974913 0
## 2705 CAACCTCAGTAACCCT HLA-DQA1 0.2462676173 0
## 2706 GTGGGTCAGGTAAACT HLA-DQA1 0.9319851693 0
## 2707 TAAGTGCCACGTCAGC HLA-DQA1 0.9722603715 1
## 2708 GACCTGGCAGCCACCA HLA-DQA1 -1.1063195953 0
## 2709 ACAGCCGCAGGATCGA HLA-DQA1 -1.2180923186 0
## 2710 AACTCCCCAGCTCGCA HLA-DQA1 0.3168274311 0
## 2711 GGAAAGCGTCTCTCGT HLA-DQA1 -1.1806801309 0
## 2712 CGCTTCAAGCAGGTCA HLA-DQA1 1.1629583566 1
## 2713 GATCGCGAGAAGGGTA HLA-DQA1 1.5976178678 1
## 2714 AAGCCGCCAGGATTGG HLA-DQA1 1.4953549331 1
## 2715 ATTGGACGTCGTGGCT HLA-DQA1 1.1013640447 0
## 2716 CCCATACCACTAAGTC HLA-DQA1 -1.4276234687 0
## 2717 TCTCTAATCCCATTTA HLA-DQA1 1.6103008270 1
## 2718 TCGTAGAGTGGTACAG HLA-DQA1 0.9953610508 1
## 2719 AAACGGGAGAGACGAA HLA-DQA1 0.7803340096 0
## 2720 GACTACATCACCACCT HLA-DQA1 -0.0474131158 0
## 2721 GAAACTCAGTTGAGTA HLA-DQA1 0.0508343627 0
## 2722 CCCTCCTTCCTCCTAG HLA-DQA1 1.2485267774 1
## 2723 GCGACCATCACGGTTA HLA-DQA1 -0.8096293537 0
## 2724 TCTCTAAAGAGTCGGT HLA-DQA1 0.1232224380 1
## 2725 GGCTCGATCTCACATT HLA-DQA1 -0.8167761071 0
## 2726 CTGATAGAGGCAGGTT HLA-DQA1 0.4058909602 1
## 2727 CATGCCTAGGAGTTTA HLA-DQA1 0.8754035573 1
## 2728 TGGCTGGTCAGCCTAA HLA-DQA1 -1.2391611431 0
## 2729 TCAGATGTCGTTACAG HLA-DQA1 -1.3261203227 0
## 2730 CAGCTGGGTTATGTGC HLA-DQA1 0.2455938578 0
## 2731 GGAACTTAGTCGTACT HLA-DQA1 -1.3140411606 0
## 2732 CCGGGATCACCGGAAA HLA-DQA1 0.8108465223 1
## 2733 CCTTCGATCAAAGACA HLA-DQA1 -1.1896311813 0
## 2734 CGAGAAGGTATCGCAT HLA-DQA1 -0.0019826983 1
## 2735 CCTAAAGAGACTGGGT HLA-DQA1 -0.8922939312 0
## 2736 CAGATCACATTGGCGC HLA-DQA1 1.9321913363 1
## 2737 CTAGCCTAGCTGGAAC HLA-DQA1 1.1306011089 1
## 2738 ATTGGTGTCTCGTATT HLA-DQA1 -0.1155365497 0
## 2739 GGGAATGTCAAAGTAG HLA-DQA1 -1.1667203931 1
## 2740 CCATGTCCACGGCCAT HLA-DQA1 -1.2383167006 0
## 2741 GGCAATTCATATGGTC HLA-DQA1 0.3760296296 0
## 2742 CTGTGCTCATGTCCTC HLA-DQA1 0.1764354144 0
## 2743 TTAACTCCAACGCACC HLA-DQA1 -1.3018231597 0
## 2744 CGAACATAGCGGCTTC HLA-DQA1 -1.1226175197 0
## 2745 TCGCGTTAGGCACATG HLA-DQA1 1.8191774529 1
## 2746 GGGTTGCCAAACTGCT HLA-DQA1 0.0038562884 0
## 2747 ATAAGAGCAGGTGCCT HLA-DQA1 0.1394687387 1
## 2748 CGGACACGTATTCGTG HLA-DQA1 0.4609882416 0
## 2749 CTGATAGTCACGACTA HLA-DQA1 -0.9334705013 0
## 2750 GAACATCGTGAGTATA HLA-DQA1 -0.0067545807 0
## 2751 TGCTACCAGTGGTCCC HLA-DQA1 1.3307198253 0
## 2752 GCTGGGTAGTCTTGCA HLA-DQA1 -1.3897114653 0
## 2753 TACGGATGTCTAACGT HLA-DQA1 -0.2023955956 0
## 2754 TGGGCGTCAATGGATA HLA-DQA1 1.1333649113 1
## 2755 CTGCTGTCATTTGCTT HLA-DQA1 -1.1987144795 0
## 2756 GGGCATCAGCAGCCTC HLA-DQA1 2.2306824551 1
## 2757 CGTGAGCAGACTAGAT HLA-DQA1 0.2571695896 0
## 2758 CAGCGACCACACCGAC HLA-DQA1 -1.3967592751 0
## 2759 CCCAATCCAGTTAACC HLA-DQA1 -1.3654469185 0
## 2760 CAGCGACTCAGCGACC HLA-DQA1 1.2838778987 0
## 2761 GAGCAGAAGCTATGCT HLA-DQA1 -0.0128020135 0
## 2762 CTCTGGTTCACTTCAT HLA-DQA1 0.1973153598 0
## 2763 CGCGTTTCAGCTGTGC HLA-DQA1 0.9273575311 1
## 2764 GGACGTCCACCTCGGA HLA-DQA1 0.7770566065 0
## 2765 TAGTTGGAGAGTTGGC HLA-DQA1 0.1049794351 0
## 2766 ATTGGTGTCGGAATCT HLA-DQA1 -1.1915393017 0
## 2767 GAATGAACACGGCCAT HLA-DQA1 0.6483595122 0
## 2768 GTGCATACAAGGTGTG HLA-DQA1 -0.9667746525 0
## 2769 GGAATAAGTCGGCACT HLA-DQA1 0.2919404937 0
## 2770 ACCCACTTCCAAAGTC HLA-DQA1 0.1964293356 0
## 2771 ACTATCTCAATTCCTT HLA-DQA1 1.6055342398 1
## 2772 AGCATACAGTGGGATC HLA-DQA1 0.9915136698 0
## 2773 GTCATTTTCCGCATCT CLEC10A 0.0914128922 1
## 2774 ATAAGAGAGGAGTTGC CLEC10A 0.1363418019 1
## 2775 CATTATCCATGGTCTA CLEC10A -0.2902540598 0
## 2776 CTTAGGAGTGGCGAAT CLEC10A -0.1134293496 0
## 2777 CATCAGAAGCACCGCT CLEC10A 0.0711732488 0
## 2778 GCGGGTTAGTAGCCGA CLEC10A -0.1991384807 0
## 2779 CAGAGAGAGCGCCTTG CLEC10A -0.0622548254 0
## 2780 CTGAAGTCAGACACTT CLEC10A -0.4140350492 0
## 2781 GGACGTCCAGGTGCCT CLEC10A -0.2657584698 1
## 2782 AAAGCAAGTGGTGTAG CLEC10A -0.4018252139 0
## 2783 TCTCATACAGGGCATA CLEC10A -0.2872519976 0
## 2784 AACTCAGGTACTCGCG CLEC10A 1.1406856452 0
## 2785 CACATTTGTGAGTATA CLEC10A -0.4226804613 0
## 2786 ACTTTCAAGGTGTTAA CLEC10A 2.5000000000 1
## 2787 TGCCCATCAGACGCAA CLEC10A -0.4717692242 0
## 2788 CTAAGACCAATGCCAT CLEC10A -0.3378095239 0
## 2789 CGGAGCTCATTTGCTT CLEC10A 2.2401700356 0
## 2790 GAGCAGATCGACGGAA CLEC10A 1.0380925112 0
## 2791 TAAACCGAGATCGATA CLEC10A 0.9273626064 0
## 2792 GTCTCGTGTACATCCA CLEC10A -0.2389673915 0
## 2793 GTATCTTAGACCCACC CLEC10A 1.1545055251 1
## 2794 GAGCAGAAGAGCCTAG CLEC10A 0.8900553648 1
## 2795 GTGCAGCTCACATAGC CLEC10A -0.4516630329 0
## 2796 CCTATTAGTAAACCTC CLEC10A -0.4691788683 0
## 2797 AGAGTGGAGTTTAGGA CLEC10A -0.4523001912 0
## 2798 TACGGGCAGGTGATTA CLEC10A -0.2303386494 0
## 2799 ACTATCTCAATCTACG CLEC10A -0.4428340891 0
## 2800 CGAGCCATCAGGCAAG CLEC10A -0.3298519474 0
## 2801 CGAATGTCAATTGCTG CLEC10A -0.6282891829 0
## 2802 TACGGTATCGTTACGA CLEC10A -0.4270100680 0
## 2803 CTGTGCTCAAGGTGTG CLEC10A -0.3504081145 0
## 2804 CCATGTCGTAACGACG CLEC10A -0.3832591852 0
## 2805 TGCTGCTAGACACTAA CLEC10A -0.4180876757 0
## 2806 ACGGGTCTCGCTTAGA CLEC10A -0.3149729692 0
## 2807 ACGAGGAAGGCTAGCA CLEC10A -0.3032452170 0
## 2808 GCACTCTGTCGGCACT CLEC10A -0.0416332879 0
## 2809 ATCATGGGTTTAAGCC CLEC10A -0.5633108642 0
## 2810 GCATGTAGTAAAGGAG CLEC10A -0.1227368933 0
## 2811 CAACTAGAGTGGGCTA CLEC10A -0.3360602962 0
## 2812 AACACGTCAATCAGAA CLEC10A 0.9529813242 1
## 2813 AAAGTAGGTGTCTGAT CLEC10A 1.4767293892 1
## 2814 CTCATTATCGCTGATA CLEC10A -0.7760257204 0
## 2815 TACTCGCCAACGCACC CLEC10A -0.6244176348 0
## 2816 GGACATTGTCCTGCTT CLEC10A 2.5000000000 1
## 2817 ACTGAACAGAGCTGGT CLEC10A -0.4403455293 0
## 2818 CTCGGGAAGTGCAAGC CLEC10A -0.3923791975 0
## 2819 AGCTCCTAGCATGGCA CLEC10A -0.4030483085 0
## 2820 TATTACCGTCGACTGC CLEC10A -0.5542824732 0
## 2821 GAACGGACATTTCACT CLEC10A -0.5792561077 0
## 2822 CACAAACTCCCGGATG CLEC10A -0.6269420254 0
## 2823 GCTCCTAAGGGAGTAA CLEC10A 0.8330967531 0
## 2824 GACTAACCATCACGTA CLEC10A 2.5000000000 1
## 2825 TACTCGCTCTTAACCT CLEC10A -0.5943113164 0
## 2826 AGGCCGTCAGGAACGT CLEC10A 0.7745780519 0
## 2827 CCACTACAGTGCTGCC CLEC10A -0.1850602344 0
## 2828 ATCCACCCAAGCCGTC CLEC10A -0.6874317674 0
## 2829 GAGTCCGAGACTGTAA CLEC10A -0.4669719446 0
## 2830 AAGCCGCCAGAAGCAC CLEC10A -0.5349055984 0
## 2831 GACACGCCAGATTGCT CLEC10A -0.3171353237 0
## 2832 CGACTTCAGGCTACGA CLEC10A -0.6372761817 0
## 2833 GGGTTGCCAGTAAGCG CLEC10A -0.4400347823 0
## 2834 AGTGAGGGTCAGAATA CLEC10A 1.0417104496 0
## 2835 GATCTAGCAGCCACCA CLEC10A -0.6840736237 0
## 2836 ACGAGGACAAGACGTG CLEC10A -0.3660322305 0
## 2837 CATATGGCAAGCCGCT CLEC10A -0.3148876247 0
## 2838 TTATGCTCAGACGCTC CLEC10A -0.7228370826 0
## 2839 AGTGTCAAGTCGCCGT CLEC10A -0.5775567024 0
## 2840 AAGGCAGGTCTGCCAG CLEC10A -0.5198566199 0
## 2841 TCAGGATAGCCCGAAA CLEC10A -0.4338435451 0
## 2842 CCACTACCACTAGTAC CLEC10A 0.8191565129 1
## 2843 AGCAGCCTCGCCAAAT CLEC10A -0.5008504966 0
## 2844 CTGCCTATCCATGCTC CLEC10A -0.4315569238 0
## 2845 GCTGCAGCATAGTAAG CLEC10A -0.6156816650 0
## 2846 GCGCAGTTCAGTTCGA CLEC10A -0.4420624387 1
## 2847 GGGCATCGTAGCGCTC CLEC10A -0.4913439282 0
## 2848 CTAATGGGTTACGTCA CLEC10A -0.6604358729 0
## 2849 ATTCTACGTTATCGGT CLEC10A -0.8078469056 0
## 2850 GAAATGATCAGCTGGC CLEC10A -0.4847115005 0
## 2851 TGCTACCTCGTCCAGG CLEC10A -0.4901285490 0
## 2852 ACATGGTCACTTACGA CLEC10A 1.4823725498 0
## 2853 ACTTTCAAGCGTTGCC CLEC10A -0.6128762924 0
## 2854 CCTACACGTAAACCTC CLEC10A -0.5743782975 0
## 2855 ATTGGTGAGATCCCAT CLEC10A -0.3371426605 0
## 2856 CCGGGATCACAGACAG CLEC10A -0.5370944592 0
## 2857 CAGTAACTCTCTTGAT CLEC10A -0.6558581037 0
## 2858 ATCTACTCAATAGCGG CLEC10A -0.6114694520 0
## 2859 ACCCACTGTTAAGAAC CLEC10A 1.5474781692 1
## 2860 ACATACGTCTGCTTGC CLEC10A -0.4959880476 0
## 2861 CGTCTACGTTGAACTC CLEC10A -0.2761599903 0
## 2862 ATTATCCCAGCAGTTT CLEC10A -0.4283898520 0
## 2863 GAAACTCTCGTTACGA CLEC10A -0.4572920739 0
## 2864 GATGAAACATCATCCC CLEC10A -0.5748248166 0
## 2865 CACAGTATCTGTCCGT CLEC10A -0.2912403027 0
## 2866 TGAAAGAAGGAGCGAG CLEC10A -0.5284961709 0
## 2867 CCGGTAGAGACCGGAT CLEC10A -0.5736370006 0
## 2868 TGCGGGTTCTAACCGA CLEC10A 1.7782329679 1
## 2869 GGCGACTTCGCGCCAA CLEC10A -0.4774182921 0
## 2870 GGGATGAAGTCGCCGT CLEC10A 0.9697986693 0
## 2871 GATTCAGGTACAGACG CLEC10A -0.5352762862 0
## 2872 TAGACCACAAGAAGAG CLEC10A -0.4775541592 0
## 2873 AATCCAGGTCAGAGGT CLEC10A -0.5881420992 1
## 2874 TGAGCCGCAATGGACG CLEC10A -0.3250530713 0
## 2875 CACATAGGTACTCTCC CLEC10A 1.1964197711 0
## 2876 CATGGCGAGCAATATG CLEC10A -0.4712102158 1
## 2877 CAGTAACGTTATTCTC CLEC10A 1.8276702296 1
## 2878 GCGAGAAGTTCCGTCT CLEC10A -0.5121246496 0
## 2879 TTTACTGGTCCCTTGT CLEC10A -0.4138706233 1
## 2880 ATCATGGCACGAAATA CLEC10A -0.4609985740 0
## 2881 CGCCAAGAGGCAGTCA CLEC10A -0.6876260784 0
## 2882 CGTCCATGTCCAGTAT CLEC10A -0.5366144376 0
## 2883 TGGCGCATCCATTCTA CLEC10A -0.4099420501 0
## 2884 CCCATACGTAGCTTGT CLEC10A -0.3460941546 0
## 2885 GCATGCGGTGCTGTAT CLEC10A -0.4453705340 0
## 2886 TTCTTAGCATGCTAGT CLEC10A -0.3468046165 0
## 2887 TGCGCAGAGTGGACGT CLEC10A 2.5000000000 1
## 2888 ATTATCCGTTGCTCCT CLEC10A -0.6101221371 0
## 2889 AGAATAGAGACTAGGC CLEC10A -0.5957779763 0
## 2890 CCTACACAGCTGCAAG CLEC10A 1.9921247743 1
## 2891 GACAGAGAGTGCTGCC CLEC10A -0.5765899202 0
## 2892 GTTCGGGTCCCAAGAT CLEC10A -0.3142333101 0
## 2893 AGTAGTCGTAAGCACG CLEC10A -0.4462727086 0
## 2894 CTCACACGTACCTACA CLEC10A -0.7423927361 0
## 2895 GCAGTTAAGTGGGTTG CLEC10A -0.2232908168 0
## 2896 GTCAAGTCAGCTCGAC CLEC10A -0.3023646392 1
## 2897 GCTGCGATCCCTAACC CLEC10A 2.4112621265 1
## 2898 GATCGTATCCCTAACC CLEC10A -0.5641586484 0
## 2899 TGAGAGGTCCGTAGTA CLEC10A -0.6644817935 0
## 2900 CTCGTCAGTGCACTTA CLEC10A -0.4691854160 0
## 2901 AGCATACAGCAAATCA CLEC10A -0.5672944305 0
## 2902 TCGGGACGTGTCAATC CLEC10A -0.5745192933 0
## 2903 ATGCGATGTAAACACA CLEC10A -0.4487626339 0
## 2904 CATGACACACAACGTT CLEC10A -0.1905227342 0
## 2905 GCTTGAAGTGCTAGCC CLEC10A 1.4056980484 0
## 2906 TTTGGTTTCTCTTATG CLEC10A -0.4921174877 0
## 2907 ACACCCTGTGAAATCA CLEC10A -0.2329168618 0
## 2908 ATCATGGTCCCTCAGT CLEC10A -0.4274756718 0
## 2909 CCTCTGACAATCAGAA CLEC10A -0.6810363133 0
## 2910 ACATACGAGACACTAA CLEC10A -0.9684849640 0
## 2911 TCACAAGTCCGTAGGC CLEC10A 1.4796321806 1
## 2912 GCAGTTAGTCCAGTGC CLEC10A 1.6544938404 1
## 2913 AGTGAGGGTTACAGAA CLEC10A -0.5751650468 0
## 2914 CACACAAGTAATCACC CLEC10A -0.6210703622 0
## 2915 GATCGCGAGGCTAGAC CLEC10A -0.3736405130 0
## 2916 CTCGTACTCCTTTCGG CLEC10A -0.2662378718 0
## 2917 ATCCACCTCGGCGGTT CLEC10A -0.5123555698 0
## 2918 GAAGCAGAGCTAGTTC CLEC10A -0.6736308303 0
## 2919 CAGTCCTAGTGTCTCA CLEC10A -0.4050464452 0
## 2920 CGCTTCACAATGGATA CLEC10A -0.3907494329 0
## 2921 TCCCGATTCATATCGG CLEC10A -0.5209771521 0
## 2922 TGTGGTACATATACCG CLEC10A -0.4181457902 0
## 2923 TACCTTACACTACAGT CLEC10A 1.9799177787 1
## 2924 GTAGGCCGTCCGTCAG CLEC10A 1.6873012268 0
## 2925 CAGAATCCAATCAGAA CLEC10A 1.0740804494 0
## 2926 GGATTACTCTGTGCAA CLEC10A -0.5856778780 1
## 2927 GTCGTAAGTTTGTTTC CLEC10A 1.8220366848 0
## 2928 GATCGTAAGCCAGTAG CLEC10A -0.5858166288 0
## 2929 GACTACAGTTAAAGAC CLEC10A -0.6620746427 0
## 2930 CATGACACAACACCTA CLEC10A -0.7681516695 0
## 2931 CACCAGGTCACGCGGT CLEC10A -0.4236271711 0
## 2932 GTCTTCGTCTGAGTGT CLEC10A -0.2973811988 1
## 2933 CCTTCGAAGTGGGATC CLEC10A 0.9328724599 0
## 2934 GTGCGGTGTCCTGCTT CLEC10A -0.6121919609 0
## 2935 GTCACAACATGCCTTC CLEC10A 1.6107154815 1
## 2936 CAGAGAGTCAGTCAGT CLEC10A -0.6200126531 0
## 2937 GTGCGGTGTACTCTCC CLEC10A -0.5137640706 0
## 2938 CAGCTAATCAAGATCC CLEC10A -0.6596316859 1
## 2939 CAAGATCGTTGGGACA CLEC10A -0.6876260784 0
## 2940 TTTATGCCATCACAAC CLEC10A -0.5921261546 0
## 2941 CGGTTAATCCCAAGTA CLEC10A 1.9896223626 0
## 2942 TAGCCGGTCCGTAGTA CLEC10A 2.0898883209 1
## 2943 ACGAGCCGTGTTTGTG CLEC10A -0.3640246099 0
## 2944 AGCATACCAAACCCAT CLEC10A -0.4202555445 0
## 2945 GAAATGATCAACACTG CLEC10A 0.9948075395 0
## 2946 TATCTCACATAACCTG CLEC10A 1.1135596224 0
## 2947 CCGTACTCACTTCTGC CLEC10A 1.7625896773 1
## 2948 CTAGAGTTCAGAGGTG CLEC10A -0.4726580768 0
## 2949 CTGATAGCATACAGCT CLEC10A -0.5384980856 0
## 2950 TCGAGGCCACGGTAGA CLEC10A 1.8223056399 1
## 2951 GATCAGTTCACTTATC CLEC10A -0.3693645647 0
## 2952 GTTTCTAAGCCCTAAT CLEC10A -0.4439822930 0
## 2953 CAGCTGGAGGAATTAC CLEC10A -0.7911904967 1
## 2954 AGAGTGGTCGATCCCT CLEC10A -0.7780615904 0
## 2955 CATGGCGCAACTGCTA CLEC10A -0.4416264248 0
## 2956 CTGGTCTGTATATGGA CLEC10A 2.5000000000 1
## 2957 CGTCACTCACAGGAGT CLEC10A -0.5165617257 0
## 2958 AACTGGTTCAACCAAC CLEC10A 0.8765692290 1
## 2959 CCATTCGCAGGGAGAG CLEC10A -0.4401806020 0
## 2960 CATCAGATCTTCAACT CLEC10A -0.5715528686 0
## 2961 GAATGAATCAGGCAAG CLEC10A -0.3780354713 0
## 2962 TGTCCCATCGAATGCT CLEC10A -0.7266760476 0
## 2963 AGTGGGACAGCCAATT CLEC10A -0.6873756313 0
## 2964 AGAGCTTTCACATGCA CLEC10A 1.0887060817 0
## 2965 TGCGGGTTCTGCAGTA CLEC10A -0.7008957734 0
## 2966 GTCGTAAGTCGGCACT CLEC10A -0.0481812684 0
## 2967 CTCGAGGTCGGAGCAA CLEC10A -0.5498211470 0
## 2968 CTACACCAGATGAGAG CLEC10A 2.5000000000 0
## 2969 ACGGCCATCTTACCTA CLEC10A -0.5866224091 0
## 2970 CCCAGTTCACACCGAC CLEC10A 0.8369460980 1
## 2971 TCGGGACTCGGATGGA CLEC10A -0.5782484660 1
## 2972 CATCGGGTCCCGACTT CLEC10A -0.6312454787 1
## 2973 CTTAACTGTAAGGATT CLEC10A -0.7376433735 0
## 2974 AACCATGAGCGTAATA CLEC10A -0.6693660267 0
## 2975 TCAGATGGTCTTCTCG CLEC10A -0.5917950499 0
## 2976 CTCACACTCCCAACGG CLEC10A -0.6792565832 0
## 2977 CCATGTCAGGATGGAA CLEC10A -0.4149699260 0
## 2978 GGGTCTGGTACTTGAC CLEC10A -0.6280988228 0
## 2979 GGAACTTCACAGTCGC CLEC10A -0.6624193632 0
## 2980 GACCTGGCACATCCAA CLEC10A -0.4408516821 0
## 2981 CAGTCCTCAAGACACG CLEC10A -0.6303878629 1
## 2982 AGATCTGCATATGGTC CLEC10A -0.4113715098 0
## 2983 CATCAGAGTATTCTCT CLEC10A 2.0458886927 0
## 2984 TGCACCTTCGATAGAA CLEC10A -0.5700937024 0
## 2985 CCTACACTCCCAAGTA CLEC10A -0.5787512495 0
## 2986 ACTTTCATCGTAGATC CLEC10A 2.5000000000 1
## 2987 TTGCGTCCACCATGTA CLEC10A 2.3808082788 0
## 2988 AAATGCCAGGTGCTAG CLEC10A -0.3510240868 0
## 2989 ATGCGATGTCCATCCT CLEC10A 1.6966049825 1
## 2990 CCAGCGAAGCCACTAT CLEC10A 1.7192550760 0
## 2991 TACTTGTAGTGTACTC CLEC10A -0.7536231113 0
## 2992 AGGGATGTCTCGCTTG CLEC10A 1.0197934010 1
## 2993 TGTCCCAGTATTAGCC CLEC10A -0.7776625602 0
## 2994 TGCTACCTCGCACTCT CLEC10A 2.4620702294 0
## 2995 GTAACGTCAGTATAAG CLEC10A 1.5293759215 1
## 2996 GCGCAACGTTCGTTGA CLEC10A -0.7630444701 1
## 2997 GCGAGAACATGAGCGA CLEC10A 0.9589908993 1
## 2998 TGCCCTAGTGCACCAC CLEC10A -0.6438846178 1
## 2999 CTAGAGTGTAAACACA CLEC10A -0.4476268978 0
## 3000 AGTAGTCCACCGGAAA CLEC10A -0.5222364696 0
## 3001 CATATTCTCAGCGATT CLEC10A -0.9159753934 0
## 3002 GAATGAAGTAACGACG CLEC10A 1.2500262230 0
## 3003 GATCAGTAGTACTTGC CLEC10A -0.5727982185 0
## 3004 CAAGAAACAGGATTGG CLEC10A -0.5791761902 1
## 3005 CCTATTATCAACACTG CLEC10A -0.5732790673 0
## 3006 CAGCAGCTCTGCGGCA CLEC10A -0.5037115113 0
## 3007 ATAAGAGAGCTGCGAA CLEC10A 0.9075687302 0
## 3008 AGATCTGCACCTATCC CLEC10A -0.7468497149 0
## 3009 GACACGCGTAGAGCTG CLEC10A -0.5909539399 0
## 3010 TACACGAAGCTAGGCA CLEC10A -0.6805736559 0
## 3011 AACACGTTCCGAAGAG CLEC10A -0.5548321184 0
## 3012 TTAACTCGTGTAATGA CLEC10A 2.0583921368 1
## 3013 TGGCGCAGTTCAGACT CLEC10A -0.4394106552 0
## 3014 CATCAGAGTCTAGTCA CLEC10A -0.7647649709 1
## 3015 CTAGAGTAGCATGGCA CLEC10A -0.9318878388 0
## 3016 TACGGTAAGCGTGAAC CLEC10A -0.3673714057 0
## 3017 TGACTTTTCGGATGTT CLEC10A 1.5953485006 1
## 3018 CTCACACTCCTACAGA CLEC10A -0.6031863560 0
## 3019 CCGTACTCACTGAAGG CLEC10A -0.3273545065 0
## 3020 ATAACGCGTGGAAAGA CLEC10A -0.5906167135 0
## 3021 GCTTGAAAGCTAGGCA CLEC10A 2.5000000000 1
## 3022 AAGTCTGGTGTTGGGA CLEC10A -0.7211062032 0
## 3023 CGATCGGGTACAGCAG CLEC10A -0.6530262959 0
## 3024 AGTAGTCTCGATGAGG CLEC10A -0.5150787959 0
## 3025 CGACCTTCAGACGCTC CLEC10A 0.8797885249 1
## 3026 GCATACACATGCAACT CLEC10A -0.5962753395 0
## 3027 TCCCGATTCGCAGGCT CLEC10A -0.2999384035 0
## 3028 TTAGGCAAGATCGATA CLEC10A -0.8006411538 1
## 3029 TCGTACCAGGCAAAGA CLEC10A 0.9469579865 0
## 3030 GGATGTTGTATAGGGC CLEC10A 0.8003357854 0
## 3031 AATCCAGCAGAGTGTG CLEC10A -0.5002803424 0
## 3032 CATGCCTCACGGCCAT CLEC10A -0.6092503059 1
## 3033 CTCGAAACACATGACT CLEC10A -0.8353628327 0
## 3034 CTGCCTAGTTGCGTTA CLEC10A -0.6962898159 0
## 3035 GGCGACTAGACAGAGA CLEC10A 1.8800863022 1
## 3036 TACAGTGGTGTAATGA CLEC10A 1.6957284834 1
## 3037 ACGAGCCTCTTATCTG CLEC10A -0.3492965219 0
## 3038 GGGAATGCAAATACAG CLEC10A 1.0656094911 1
## 3039 TGCACCTGTACCGAGA CLEC10A -0.7986082073 0
## 3040 ATCATCTTCAGTCAGT CLEC10A -0.7020383078 0
## 3041 CATATTCGTACAGTTC CLEC10A -0.8307625465 0
## 3042 GCATGATGTTCCACTC CLEC10A 2.0252107747 0
## 3043 AAGGCAGTCACGACTA CLEC10A -0.4189715060 0
## 3044 GAAACTCTCTATCCCG CLEC10A 1.0720853036 0
## 3045 AGCATACTCTGCTGTC CLEC10A -0.6072146140 1
## 3046 TGGGCGTCAGCGTTCG CLEC10A 2.4521130124 1
## 3047 TCGTAGAGTTCGTCTC CLEC10A -0.4196465166 0
## 3048 GACAGAGGTACCGCTG CLEC10A 2.3820114291 1
## 3049 TCTCATACACATAACC CLEC10A -0.8549054134 0
## 3050 TGGGCGTCATTGAGCT CLEC10A -0.3143706047 0
## 3051 CATGACACATGTCTCC CLEC10A -0.6875818036 0
## 3052 GAATAAGGTGCACGAA CLEC10A 1.5074484700 1
## 3053 TGCGCAGCAAGCGAGT CLEC10A -1.0468864795 0
## 3054 CTTCTCTCAGCCAGAA CLEC10A -0.5258232902 0
## 3055 AAGCCGCAGTGGCACA CLEC10A -0.7891353059 0
## 3056 CTCTACGAGTGGACGT CLEC10A -0.5295636186 0
## 3057 GTCATTTTCTATCCCG CLEC10A -0.6722664873 0
## 3058 CGAGCACAGCCACTAT CLEC10A -0.6252809907 1
## 3059 AGTAGTCGTAACGACG CLEC10A -0.7893772319 0
## 3060 GACGTGCAGAGGGATA CLEC10A -0.3193488498 0
## 3061 GTCTTCGTCCAACCAA CLEC10A -0.6103492989 0
## 3062 CAAGGCCTCGCCCTTA CLEC10A -0.5701027012 0
## 3063 TGTGGTACATGGTTGT CLEC10A -0.4750359433 0
## 3064 CCTCAGTTCGAATGCT CLEC10A -0.9607502942 1
## 3065 ACCGTAATCTGAGGGA CLEC10A 2.4625768069 1
## 3066 GTTAAGCCAGTTCATG CLEC10A -0.7544879146 0
## 3067 CTGCCTATCAATCTCT CLEC10A -0.7217785009 0
## 3068 GACGGCTTCTCCAACC CLEC10A -0.7832648182 0
## 3069 TTTCCTCCAGTTCCCT CLEC10A -0.7066363651 0
## 3070 GCGCCAAAGCCCTAAT CLEC10A -0.4437181961 0
## 3071 CCACCTATCCCGACTT CLEC10A 1.7743537904 1
## 3072 TTTATGCCAGGGCATA CLEC10A 1.1037704232 1
## 3073 TACAGTGTCGCGGATC CLEC10A 2.5000000000 1
## 3074 AGCTCTCCACCACGTG CLEC10A -0.3906948671 0
## 3075 GTGGGTCCATTGAGCT CLEC10A 2.2841349979 1
## 3076 GGGATGACAGACTCGC CLEC10A -0.4894772767 0
## 3077 ACACCAAGTTCGGGCT CLEC10A 2.3249041973 1
## 3078 TGATTTCAGCTATGCT CLEC10A -0.7333725648 1
## 3079 TGGCCAGAGAGGGCTT CLEC10A -0.6829693034 0
## 3080 TCGGTAAGTAAAGTCA CLEC10A -0.6576835262 0
## 3081 TGAAAGAGTCCCTTGT CLEC10A -0.8542380458 1
## 3082 CCGTGGATCGTTTATC CLEC10A 0.8259924956 1
## 3083 GAACCTATCCTCAACC CLEC10A 1.7512676748 0
## 3084 GCGCAGTCATCCAACA CLEC10A -0.6426289014 1
## 3085 ACATGGTTCGCGCCAA CLEC10A 1.5547099796 1
## 3086 CTTGGCTGTACGCACC CLEC10A -0.3652376717 0
## 3087 AGATTGCAGGCCCGTT CLEC10A -0.5749232823 0
## 3088 AGGCCGTGTTACGGAG CLEC10A 2.5000000000 1
## 3089 GGTGTTAGTTAAGATG CLEC10A -0.9206488322 0
## 3090 GGAATAATCCTGTAGA CLEC10A 1.9495747736 1
## 3091 TATTACCGTATTAGCC CLEC10A -0.6422118292 1
## 3092 ATAACGCGTTAGTGGG CLEC10A -0.6309072576 0
## 3093 AAACGGGGTTATCCGA CLEC10A 1.0609962178 0
## 3094 TGTGGTATCGTTTAGG CLEC10A 0.7884764579 1
## 3095 ATCACGAGTATGAATG CLEC10A -0.4540102825 1
## 3096 CAGCAGCTCACCTCGT CLEC10A -0.8173836328 0
## 3097 CCAATCCGTATTACCG CLEC10A -0.7728531230 1
## 3098 TTCTACATCACATAGC CLEC10A -0.6880527171 0
## 3099 TGTCCCATCGTATCAG CLEC10A -0.4184530448 0
## 3100 AGCTCTCAGTGTTTGC CLEC10A -0.3339976457 0
## 3101 CAACCTCAGTAACCCT CLEC10A -0.5278561913 0
## 3102 GTGGGTCAGGTAAACT CLEC10A -0.3678784190 0
## 3103 TAAGTGCCACGTCAGC CLEC10A 1.3238736080 1
## 3104 GACCTGGCAGCCACCA CLEC10A -0.5477080264 0
## 3105 ACAGCCGCAGGATCGA CLEC10A 1.6929029406 0
## 3106 AACTCCCCAGCTCGCA CLEC10A -0.4641297370 0
## 3107 GGAAAGCGTCTCTCGT CLEC10A -0.5981672635 0
## 3108 CGCTTCAAGCAGGTCA CLEC10A 1.6246952503 1
## 3109 GATCGCGAGAAGGGTA CLEC10A 2.4544054434 1
## 3110 AAGCCGCCAGGATTGG CLEC10A -0.6458645106 1
## 3111 ATTGGACGTCGTGGCT CLEC10A -0.5449296901 0
## 3112 CCCATACCACTAAGTC CLEC10A -0.8663855549 0
## 3113 TCTCTAATCCCATTTA CLEC10A 1.8843005337 1
## 3114 TCGTAGAGTGGTACAG CLEC10A 1.7074562713 1
## 3115 AAACGGGAGAGACGAA CLEC10A -0.8480612619 0
## 3116 GACTACATCACCACCT CLEC10A 0.8786292444 0
## 3117 GAAACTCAGTTGAGTA CLEC10A -0.7606884453 0
## 3118 CCCTCCTTCCTCCTAG CLEC10A 0.8287317726 1
## 3119 GCGACCATCACGGTTA CLEC10A -0.2994882878 0
## 3120 TCTCTAAAGAGTCGGT CLEC10A -0.5755385546 1
## 3121 GGCTCGATCTCACATT CLEC10A -0.2683754907 0
## 3122 CTGATAGAGGCAGGTT CLEC10A -0.3747776305 1
## 3123 CATGCCTAGGAGTTTA CLEC10A 1.9237661492 1
## 3124 TGGCTGGTCAGCCTAA CLEC10A -0.6875552893 0
## 3125 TCAGATGTCGTTACAG CLEC10A -0.7569174070 0
## 3126 CAGCTGGGTTATGTGC CLEC10A -0.5739647914 0
## 3127 GGAACTTAGTCGTACT CLEC10A -0.7534091282 0
## 3128 CCGGGATCACCGGAAA CLEC10A 0.8430973631 1
## 3129 CCTTCGATCAAAGACA CLEC10A -0.6327845151 0
## 3130 CGAGAAGGTATCGCAT CLEC10A -0.7663840576 1
## 3131 CCTAAAGAGACTGGGT CLEC10A -0.3329565105 0
## 3132 CAGATCACATTGGCGC CLEC10A -0.6697184928 1
## 3133 CTAGCCTAGCTGGAAC CLEC10A -0.2353295528 1
## 3134 ATTGGTGTCTCGTATT CLEC10A -0.9094275823 0
## 3135 GGGAATGTCAAAGTAG CLEC10A -0.6106747091 1
## 3136 CCATGTCCACGGCCAT CLEC10A -0.6791532941 0
## 3137 GGCAATTCATATGGTC CLEC10A -0.4001071987 0
## 3138 CTGTGCTCATGTCCTC CLEC10A -0.5652616848 0
## 3139 TTAACTCCAACGCACC CLEC10A -0.7459676838 0
## 3140 CGAACATAGCGGCTTC CLEC10A -0.5763930748 0
## 3141 TCGCGTTAGGCACATG CLEC10A 1.4382482605 1
## 3142 GGGTTGCCAAACTGCT CLEC10A 0.9290847099 0
## 3143 ATAAGAGCAGGTGCCT CLEC10A -0.6231465921 1
## 3144 CGGACACGTATTCGTG CLEC10A -0.9568424392 0
## 3145 CTGATAGTCACGACTA CLEC10A -0.3908832684 0
## 3146 GAACATCGTGAGTATA CLEC10A -0.7674868185 0
## 3147 TGCTACCAGTGGTCCC CLEC10A -0.6126375035 0
## 3148 GCTGGGTAGTCTTGCA CLEC10A -0.8210744325 0
## 3149 TACGGATGTCTAACGT CLEC10A 0.7323258532 0
## 3150 TGGGCGTCAATGGATA CLEC10A 1.8450542956 1
## 3151 CTGCTGTCATTTGCTT CLEC10A 1.1131134548 0
## 3152 GGGCATCAGCAGCCTC CLEC10A 1.4480169702 1
## 3153 CGTGAGCAGACTAGAT CLEC10A -0.4994597172 0
## 3154 CAGCGACCACACCGAC CLEC10A -0.8392427195 0
## 3155 CCCAATCCAGTTAACC CLEC10A -0.8013857148 0
## 3156 CAGCGACTCAGCGACC CLEC10A -0.8295883186 0
## 3157 GAGCAGAAGCTATGCT CLEC10A -0.7994295110 0
## 3158 CTCTGGTTCACTTCAT CLEC10A -0.4574452985 0
## 3159 CGCGTTTCAGCTGTGC CLEC10A 0.9542195993 1
## 3160 GGACGTCCACCTCGGA CLEC10A -0.5481814817 0
## 3161 TAGTTGGAGAGTTGGC CLEC10A -0.6878571804 0
## 3162 ATTGGTGTCGGAATCT CLEC10A -0.6291131271 0
## 3163 GAATGAACACGGCCAT CLEC10A -0.6954139590 0
## 3164 GTGCATACAAGGTGTG CLEC10A -0.4186086216 0
## 3165 GGAATAAGTCGGCACT CLEC10A -1.0307530812 0
## 3166 ACCCACTTCCAAAGTC CLEC10A -0.5047058163 0
## 3167 ACTATCTCAATTCCTT CLEC10A -0.7566587586 1
## 3168 AGCATACAGTGGGATC CLEC10A 1.0065786149 0
## 3169 GTCATTTTCCGCATCT HLA-DQB1 0.6481552068 1
## 3170 ATAAGAGAGGAGTTGC HLA-DQB1 1.2464010421 1
## 3171 CATTATCCATGGTCTA HLA-DQB1 -0.0856264428 0
## 3172 CTTAGGAGTGGCGAAT HLA-DQB1 -0.9082978845 0
## 3173 CATCAGAAGCACCGCT HLA-DQB1 -0.7661525560 0
## 3174 GCGGGTTAGTAGCCGA HLA-DQB1 -0.9854492135 0
## 3175 CAGAGAGAGCGCCTTG HLA-DQB1 0.0766810888 0
## 3176 CTGAAGTCAGACACTT HLA-DQB1 -0.1091084219 0
## 3177 GGACGTCCAGGTGCCT HLA-DQB1 0.7813952435 1
## 3178 AAAGCAAGTGGTGTAG HLA-DQB1 1.1350171049 0
## 3179 TCTCATACAGGGCATA HLA-DQB1 -1.0613599548 0
## 3180 AACTCAGGTACTCGCG HLA-DQB1 0.5802363247 0
## 3181 CACATTTGTGAGTATA HLA-DQB1 0.7373088653 0
## 3182 ACTTTCAAGGTGTTAA HLA-DQB1 0.4492754970 1
## 3183 TGCCCATCAGACGCAA HLA-DQB1 -1.2234402483 0
## 3184 CTAAGACCAATGCCAT HLA-DQB1 -1.1051572760 0
## 3185 CGGAGCTCATTTGCTT HLA-DQB1 -0.1527731421 0
## 3186 GAGCAGATCGACGGAA HLA-DQB1 0.4999167644 0
## 3187 TAAACCGAGATCGATA HLA-DQB1 -1.1801478705 0
## 3188 GTCTCGTGTACATCCA HLA-DQB1 0.7965486027 0
## 3189 GTATCTTAGACCCACC HLA-DQB1 0.5945459600 1
## 3190 GAGCAGAAGAGCCTAG HLA-DQB1 1.4770542001 1
## 3191 GTGCAGCTCACATAGC HLA-DQB1 -1.2100482830 0
## 3192 CCTATTAGTAAACCTC HLA-DQB1 -1.2234284808 0
## 3193 AGAGTGGAGTTTAGGA HLA-DQB1 0.4210023702 0
## 3194 TACGGGCAGGTGATTA HLA-DQB1 0.0914159412 0
## 3195 ACTATCTCAATCTACG HLA-DQB1 -0.0450789376 0
## 3196 CGAGCCATCAGGCAAG HLA-DQB1 0.8433772181 0
## 3197 CGAATGTCAATTGCTG HLA-DQB1 -1.3564684599 0
## 3198 TACGGTATCGTTACGA HLA-DQB1 -1.1914604859 0
## 3199 CTGTGCTCAAGGTGTG HLA-DQB1 0.5079885368 0
## 3200 CCATGTCGTAACGACG HLA-DQB1 1.0761109122 0
## 3201 TGCTGCTAGACACTAA HLA-DQB1 -0.1041868692 0
## 3202 ACGGGTCTCGCTTAGA HLA-DQB1 0.0333771311 0
## 3203 ACGAGGAAGGCTAGCA HLA-DQB1 0.5384393131 0
## 3204 GCACTCTGTCGGCACT HLA-DQB1 -0.8847730434 0
## 3205 ATCATGGGTTTAAGCC HLA-DQB1 -1.2989102082 0
## 3206 GCATGTAGTAAAGGAG HLA-DQB1 -0.9463222162 0
## 3207 CAACTAGAGTGGGCTA HLA-DQB1 0.0293519022 0
## 3208 AACACGTCAATCAGAA HLA-DQB1 2.0665872012 1
## 3209 AAAGTAGGTGTCTGAT HLA-DQB1 0.6764684508 1
## 3210 CTCATTATCGCTGATA HLA-DQB1 -1.4860961954 0
## 3211 TACTCGCCAACGCACC HLA-DQB1 0.6983672520 0
## 3212 GGACATTGTCCTGCTT HLA-DQB1 1.5018856278 1
## 3213 ACTGAACAGAGCTGGT HLA-DQB1 0.4879592802 0
## 3214 CTCGGGAAGTGCAAGC HLA-DQB1 -0.0112051925 0
## 3215 AGCTCCTAGCATGGCA HLA-DQB1 0.4918773334 0
## 3216 TATTACCGTCGACTGC HLA-DQB1 -0.0763894375 0
## 3217 GAACGGACATTTCACT HLA-DQB1 -1.3253755951 0
## 3218 CACAAACTCCCGGATG HLA-DQB1 -0.1882641928 0
## 3219 GCTCCTAAGGGAGTAA HLA-DQB1 -1.3576807806 0
## 3220 GACTAACCATCACGTA HLA-DQB1 1.8007098062 1
## 3221 TACTCGCTCTTAACCT HLA-DQB1 -0.1516626608 0
## 3222 AGGCCGTCAGGAACGT HLA-DQB1 -1.4217291683 0
## 3223 CCACTACAGTGCTGCC HLA-DQB1 1.0401936762 0
## 3224 ATCCACCCAAGCCGTC HLA-DQB1 1.1510043200 0
## 3225 GAGTCCGAGACTGTAA HLA-DQB1 0.5066879968 0
## 3226 AAGCCGCCAGAAGCAC HLA-DQB1 -0.0913023846 0
## 3227 GACACGCCAGATTGCT HLA-DQB1 0.0826008541 0
## 3228 CGACTTCAGGCTACGA HLA-DQB1 0.6855624810 0
## 3229 GGGTTGCCAGTAAGCG HLA-DQB1 0.4890100544 0
## 3230 AGTGAGGGTCAGAATA HLA-DQB1 0.5102900199 0
## 3231 GATCTAGCAGCCACCA HLA-DQB1 0.6700318363 0
## 3232 ACGAGGACAAGACGTG HLA-DQB1 0.5866817243 0
## 3233 CATATGGCAAGCCGCT HLA-DQB1 -1.1075715935 0
## 3234 TTATGCTCAGACGCTC HLA-DQB1 0.2659652236 0
## 3235 AGTGTCAAGTCGCCGT HLA-DQB1 -0.1039767915 0
## 3236 AAGGCAGGTCTGCCAG HLA-DQB1 -1.2801332738 0
## 3237 TCAGGATAGCCCGAAA HLA-DQB1 0.0032801109 0
## 3238 CCACTACCACTAGTAC HLA-DQB1 -1.3922556049 1
## 3239 AGCAGCCTCGCCAAAT HLA-DQB1 -0.0572785790 0
## 3240 CTGCCTATCCATGCTC HLA-DQB1 -1.2070156346 0
## 3241 GCTGCAGCATAGTAAG HLA-DQB1 0.7208636707 0
## 3242 GCGCAGTTCAGTTCGA HLA-DQB1 -0.0070003273 1
## 3243 GGGCATCGTAGCGCTC HLA-DQB1 0.4566355333 0
## 3244 CTAATGGGTTACGTCA HLA-DQB1 -1.3872514105 0
## 3245 ATTCTACGTTATCGGT HLA-DQB1 -1.5036437404 0
## 3246 GAAATGATCAGCTGGC HLA-DQB1 -0.0640252494 0
## 3247 TGCTACCTCGTCCAGG HLA-DQB1 -1.2516968181 0
## 3248 ACATGGTCACTTACGA HLA-DQB1 0.3320320497 0
## 3249 ACTTTCAAGCGTTGCC HLA-DQB1 -1.3514954588 0
## 3250 CCTACACGTAAACCTC HLA-DQB1 0.4228555947 0
## 3251 ATTGGTGAGATCCCAT HLA-DQB1 -1.1257705555 0
## 3252 CCGGGATCACAGACAG HLA-DQB1 -1.2926981947 0
## 3253 CAGTAACTCTCTTGAT HLA-DQB1 -1.3900606966 0
## 3254 ATCTACTCAATAGCGG HLA-DQB1 -1.3474464302 0
## 3255 ACCCACTGTTAAGAAC HLA-DQB1 0.3802943343 1
## 3256 ACATACGTCTGCTTGC HLA-DQB1 -1.2634407596 0
## 3257 CGTCTACGTTGAACTC HLA-DQB1 0.0882030315 0
## 3258 ATTATCCCAGCAGTTT HLA-DQB1 0.0162951937 0
## 3259 GAAACTCTCGTTACGA HLA-DQB1 -1.2242024982 0
## 3260 GATGAAACATCATCCC HLA-DQB1 -0.0798433073 0
## 3261 CACAGTATCTGTCCGT HLA-DQB1 -1.0985959227 0
## 3262 TGAAAGAAGGAGCGAG HLA-DQB1 -1.2864833457 0
## 3263 CCGGTAGAGACCGGAT HLA-DQB1 0.9723950827 0
## 3264 TGCGGGTTCTAACCGA HLA-DQB1 1.3759407220 1
## 3265 GGCGACTTCGCGCCAA HLA-DQB1 0.0163006255 0
## 3266 GGGATGAAGTCGCCGT HLA-DQB1 -1.3263899879 0
## 3267 GATTCAGGTACAGACG HLA-DQB1 0.7831022782 0
## 3268 TAGACCACAAGAAGAG HLA-DQB1 -1.2417036963 0
## 3269 AATCCAGGTCAGAGGT HLA-DQB1 1.0100588617 1
## 3270 TGAGCCGCAATGGACG HLA-DQB1 0.0990702482 0
## 3271 CACATAGGTACTCTCC HLA-DQB1 -1.1450108399 0
## 3272 CATGGCGAGCAATATG HLA-DQB1 1.9728436814 1
## 3273 CAGTAACGTTATTCTC HLA-DQB1 0.5995380234 1
## 3274 GCGAGAAGTTCCGTCT HLA-DQB1 0.7952471005 0
## 3275 TTTACTGGTCCCTTGT HLA-DQB1 -0.0005833081 1
## 3276 ATCATGGCACGAAATA HLA-DQB1 -1.2328115755 0
## 3277 CGCCAAGAGGCAGTCA HLA-DQB1 0.3755778124 0
## 3278 CGTCCATGTCCAGTAT HLA-DQB1 -1.2961344596 0
## 3279 TGGCGCATCCATTCTA HLA-DQB1 0.5880926858 0
## 3280 CCCATACGTAGCTTGT HLA-DQB1 -1.1272828827 0
## 3281 GCATGCGGTGCTGTAT HLA-DQB1 -1.2145281282 0
## 3282 TTCTTAGCATGCTAGT HLA-DQB1 -1.1368423961 0
## 3283 TGCGCAGAGTGGACGT HLA-DQB1 1.7774584024 1
## 3284 ATTATCCGTTGCTCCT HLA-DQB1 0.8707475980 0
## 3285 AGAATAGAGACTAGGC HLA-DQB1 1.7558347251 0
## 3286 CCTACACAGCTGCAAG HLA-DQB1 0.9977742315 1
## 3287 GACAGAGAGTGCTGCC HLA-DQB1 -0.0841175086 0
## 3288 GTTCGGGTCCCAAGAT HLA-DQB1 0.6777413315 0
## 3289 AGTAGTCGTAAGCACG HLA-DQB1 -0.0061005917 0
## 3290 CTCACACGTACCTACA HLA-DQB1 -0.2152050469 0
## 3291 GCAGTTAAGTGGGTTG HLA-DQB1 0.7379879354 0
## 3292 GTCAAGTCAGCTCGAC HLA-DQB1 0.6571180967 1
## 3293 GCTGCGATCCCTAACC HLA-DQB1 0.2651949691 1
## 3294 GATCGTATCCCTAACC HLA-DQB1 -1.3162010500 0
## 3295 TGAGAGGTCCGTAGTA HLA-DQB1 0.9837938630 0
## 3296 CTCGTCAGTGCACTTA HLA-DQB1 0.0024806469 0
## 3297 AGCATACAGCAAATCA HLA-DQB1 0.4509159619 0
## 3298 TCGGGACGTGTCAATC HLA-DQB1 -1.3209265267 0
## 3299 ATGCGATGTAAACACA HLA-DQB1 -0.0125525498 0
## 3300 CATGACACACAACGTT HLA-DQB1 -1.0211477599 0
## 3301 GCTTGAAGTGCTAGCC HLA-DQB1 1.1528299475 0
## 3302 TTTGGTTTCTCTTATG HLA-DQB1 0.8164234496 0
## 3303 ACACCCTGTGAAATCA HLA-DQB1 0.2425892522 0
## 3304 ATCATGGTCCCTCAGT HLA-DQB1 -1.2086085768 0
## 3305 CCTCTGACAATCAGAA HLA-DQB1 -1.4162615519 0
## 3306 ACATACGAGACACTAA HLA-DQB1 -0.3542992518 0
## 3307 TCACAAGTCCGTAGGC HLA-DQB1 0.3223195714 1
## 3308 GCAGTTAGTCCAGTGC HLA-DQB1 1.0722324343 1
## 3309 AGTGAGGGTTACAGAA HLA-DQB1 -0.0377615757 0
## 3310 CACACAAGTAATCACC HLA-DQB1 -1.3602878476 0
## 3311 GATCGCGAGGCTAGAC HLA-DQB1 0.6428490572 0
## 3312 CTCGTACTCCTTTCGG HLA-DQB1 0.1899439489 0
## 3313 ATCCACCTCGGCGGTT HLA-DQB1 0.5956324528 0
## 3314 GAAGCAGAGCTAGTTC HLA-DQB1 -1.4102668340 0
## 3315 CAGTCCTAGTGTCTCA HLA-DQB1 -1.1933757817 0
## 3316 CGCTTCACAATGGATA HLA-DQB1 0.0819046022 0
## 3317 TCCCGATTCATATCGG HLA-DQB1 0.8191483634 0
## 3318 TGTGGTACATATACCG HLA-DQB1 -1.2017258308 0
## 3319 TACCTTACACTACAGT HLA-DQB1 0.7259674769 1
## 3320 GTAGGCCGTCCGTCAG HLA-DQB1 1.0983757225 0
## 3321 CAGAATCCAATCAGAA HLA-DQB1 0.8851283984 0
## 3322 GGATTACTCTGTGCAA HLA-DQB1 2.0008441336 1
## 3323 GTCGTAAGTTTGTTTC HLA-DQB1 0.6000771056 0
## 3324 GATCGTAAGCCAGTAG HLA-DQB1 -1.3370069390 0
## 3325 GACTACAGTTAAAGAC HLA-DQB1 0.4146530492 0
## 3326 CATGACACAACACCTA HLA-DQB1 -1.4912703847 0
## 3327 CACCAGGTCACGCGGT HLA-DQB1 0.6332858477 0
## 3328 GTCTTCGTCTGAGTGT HLA-DQB1 0.1763641240 1
## 3329 CCTTCGAAGTGGGATC HLA-DQB1 0.4276720546 0
## 3330 GTGCGGTGTCCTGCTT HLA-DQB1 -0.0551880134 0
## 3331 GTCACAACATGCCTTC HLA-DQB1 1.0369430945 1
## 3332 CAGAGAGTCAGTCAGT HLA-DQB1 -1.3623622300 0
## 3333 GTGCGGTGTACTCTCC HLA-DQB1 -0.0283615537 0
## 3334 CAGCTAATCAAGATCC HLA-DQB1 0.4245625212 1
## 3335 CAAGATCGTTGGGACA HLA-DQB1 0.3755778124 0
## 3336 TTTATGCCATCACAAC HLA-DQB1 -0.0566026453 0
## 3337 CGGTTAATCCCAAGTA HLA-DQB1 0.7352191956 0
## 3338 TAGCCGGTCCGTAGTA HLA-DQB1 1.4468609013 1
## 3339 ACGAGCCGTGTTTGTG HLA-DQB1 -1.1571573488 0
## 3340 AGCATACCAAACCCAT HLA-DQB1 0.5964102991 0
## 3341 GAAATGATCAACACTG HLA-DQB1 -0.0703740740 0
## 3342 TATCTCACATAACCTG HLA-DQB1 -1.2301023952 0
## 3343 CCGTACTCACTTCTGC HLA-DQB1 0.5429883949 1
## 3344 CTAGAGTTCAGAGGTG HLA-DQB1 0.0165979174 0
## 3345 CTGATAGCATACAGCT HLA-DQB1 -1.2971737296 0
## 3346 TCGAGGCCACGGTAGA HLA-DQB1 0.9461712108 1
## 3347 GATCAGTTCACTTATC HLA-DQB1 -1.1568385261 0
## 3348 GTTTCTAAGCCCTAAT HLA-DQB1 -1.2185239540 0
## 3349 CAGCTGGAGGAATTAC HLA-DQB1 0.3283836788 1
## 3350 AGAGTGGTCGATCCCT HLA-DQB1 -1.4921407837 0
## 3351 CATGGCGCAACTGCTA HLA-DQB1 -1.2172084940 0
## 3352 CTGGTCTGTATATGGA HLA-DQB1 1.5171098869 1
## 3353 CGTCACTCACAGGAGT HLA-DQB1 -0.0233769301 0
## 3354 AACTGGTTCAACCAAC HLA-DQB1 1.1999832741 1
## 3355 CCATTCGCAGGGAGAG HLA-DQB1 0.0884428307 0
## 3356 CATCAGATCTTCAACT HLA-DQB1 0.8554917753 0
## 3357 GAATGAATCAGGCAAG HLA-DQB1 -1.1671163182 0
## 3358 TGTCCCATCGAATGCT HLA-DQB1 -0.1629292009 0
## 3359 AGTGGGACAGCCAATT HLA-DQB1 -1.4215450642 0
## 3360 AGAGCTTTCACATGCA HLA-DQB1 -1.2989592365 0
## 3361 TGCGGGTTCTGCAGTA HLA-DQB1 -0.1294192408 0
## 3362 GTCGTAAGTCGGCACT HLA-DQB1 -0.8997043961 0
## 3363 CTCGAGGTCGGAGCAA HLA-DQB1 -0.0228958556 0
## 3364 CTACACCAGATGAGAG HLA-DQB1 -0.0674723486 0
## 3365 ACGGCCATCTTACCTA HLA-DQB1 -1.3406152513 0
## 3366 CCCAGTTCACACCGAC HLA-DQB1 1.6176986084 1
## 3367 TCGGGACTCGGATGGA HLA-DQB1 -1.3387075066 1
## 3368 CATCGGGTCCCGACTT HLA-DQB1 -0.0357680814 1
## 3369 CTTAACTGTAAGGATT HLA-DQB1 0.7678782712 0
## 3370 AACCATGAGCGTAATA HLA-DQB1 -0.0990269549 0
## 3371 TCAGATGGTCTTCTCG HLA-DQB1 0.5074921394 0
## 3372 CTCACACTCCCAACGG HLA-DQB1 -1.4192694379 0
## 3373 CCATGTCAGGATGGAA HLA-DQB1 0.1033759856 0
## 3374 GGGTCTGGTACTTGAC HLA-DQB1 -0.0866020949 0
## 3375 GGAACTTCACAGTCGC HLA-DQB1 -0.0936777296 0
## 3376 GACCTGGCACATCCAA HLA-DQB1 -1.2242294902 0
## 3377 CAGTCCTCAAGACACG HLA-DQB1 0.5051273597 1
## 3378 AGATCTGCATATGGTC HLA-DQB1 0.6609439035 0
## 3379 CATCAGAGTATTCTCT HLA-DQB1 -1.4589222448 0
## 3380 TGCACCTTCGATAGAA HLA-DQB1 -1.3264730945 0
## 3381 CCTACACTCCCAAGTA HLA-DQB1 -0.0611404957 0
## 3382 ACTTTCATCGTAGATC HLA-DQB1 1.1615592683 1
## 3383 TTGCGTCCACCATGTA HLA-DQB1 -0.1169576776 0
## 3384 AAATGCCAGGTGCTAG HLA-DQB1 -1.1466184760 0
## 3385 ATGCGATGTCCATCCT HLA-DQB1 1.6308418819 1
## 3386 CCAGCGAAGCCACTAT HLA-DQB1 -1.3738703799 0
## 3387 TACTTGTAGTGTACTC HLA-DQB1 0.6817199682 0
## 3388 AGGGATGTCTCGCTTG HLA-DQB1 0.8535521172 1
## 3389 TGTCCCAGTATTAGCC HLA-DQB1 0.6871198259 0
## 3390 TGCTACCTCGCACTCT HLA-DQB1 -0.2667187761 0
## 3391 GTAACGTCAGTATAAG HLA-DQB1 0.3580054313 1
## 3392 GCGCAACGTTCGTTGA HLA-DQB1 0.3818846309 1
## 3393 GCGAGAACATGAGCGA HLA-DQB1 -0.1009113496 1
## 3394 TGCCCTAGTGCACCAC HLA-DQB1 1.2810351387 1
## 3395 CTAGAGTGTAAACACA HLA-DQB1 1.0327599596 0
## 3396 AGTAGTCCACCGGAAA HLA-DQB1 1.1844409628 0
## 3397 CATATTCTCAGCGATT HLA-DQB1 0.6357099708 0
## 3398 GAATGAAGTAACGACG HLA-DQB1 0.6829169845 0
## 3399 GATCAGTAGTACTTGC HLA-DQB1 -1.3311736303 0
## 3400 CAAGAAACAGGATTGG HLA-DQB1 2.0285450186 1
## 3401 CCTATTATCAACACTG HLA-DQB1 1.0923967651 0
## 3402 CAGCAGCTCTGCGGCA HLA-DQB1 0.0519390859 0
## 3403 ATAAGAGAGCTGCGAA HLA-DQB1 1.5424334853 0
## 3404 AGATCTGCACCTATCC HLA-DQB1 0.3997016119 0
## 3405 GACACGCGTAGAGCTG HLA-DQB1 -0.0390663645 0
## 3406 TACACGAAGCTAGGCA HLA-DQB1 -1.4181792957 0
## 3407 AACACGTTCCGAAGAG HLA-DQB1 0.8598138880 0
## 3408 TTAACTCGTGTAATGA HLA-DQB1 1.4226048083 1
## 3409 TGGCGCAGTTCAGACT HLA-DQB1 0.9824642891 0
## 3410 CATCAGAGTCTAGTCA HLA-DQB1 0.7259672978 1
## 3411 CTAGAGTAGCATGGCA HLA-DQB1 -1.6206610094 0
## 3412 TACGGTAAGCGTGAAC HLA-DQB1 -1.1692786592 0
## 3413 TGACTTTTCGGATGTT HLA-DQB1 1.6782746209 1
## 3414 CTCACACTCCTACAGA HLA-DQB1 1.1367406262 0
## 3415 CCGTACTCACTGAAGG HLA-DQB1 0.1189729263 0
## 3416 ATAACGCGTGGAAAGA HLA-DQB1 -0.0977697722 0
## 3417 GCTTGAAAGCTAGGCA HLA-DQB1 1.3896821491 1
## 3418 AAGTCTGGTGTTGGGA HLA-DQB1 -1.4495309953 0
## 3419 CGATCGGGTACAGCAG HLA-DQB1 0.8417865705 0
## 3420 AGTAGTCTCGATGAGG HLA-DQB1 0.0263110186 0
## 3421 CGACCTTCAGACGCTC HLA-DQB1 1.7589498955 1
## 3422 GCATACACATGCAACT HLA-DQB1 -0.0008966754 0
## 3423 TCCCGATTCGCAGGCT HLA-DQB1 0.7948364245 0
## 3424 TTAGGCAAGATCGATA HLA-DQB1 1.2881720185 1
## 3425 TCGTACCAGGCAAAGA HLA-DQB1 -0.1097923971 0
## 3426 GGATGTTGTATAGGGC HLA-DQB1 -0.2261086775 0
## 3427 AATCCAGCAGAGTGTG HLA-DQB1 0.6132069760 0
## 3428 CATGCCTCACGGCCAT HLA-DQB1 1.1850873466 1
## 3429 CTCGAAACACATGACT HLA-DQB1 -1.5459590378 0
## 3430 CTGCCTAGTTGCGTTA HLA-DQB1 0.4779221091 0
## 3431 GGCGACTAGACAGAGA HLA-DQB1 0.6351175792 1
## 3432 TACAGTGGTGTAATGA HLA-DQB1 0.8431225015 1
## 3433 ACGAGCCTCTTATCTG HLA-DQB1 -1.1542858910 0
## 3434 GGGAATGCAAATACAG HLA-DQB1 0.8928366733 1
## 3435 TGCACCTGTACCGAGA HLA-DQB1 -1.5128939565 0
## 3436 ATCATCTTCAGTCAGT HLA-DQB1 -1.4376043392 0
## 3437 CATATTCGTACAGTTC HLA-DQB1 -1.5411289798 0
## 3438 GCATGATGTTCCACTC HLA-DQB1 0.7541281873 0
## 3439 AAGGCAGTCACGACTA HLA-DQB1 0.6855839423 0
## 3440 GAAACTCTCTATCCCG HLA-DQB1 0.5401671900 0
## 3441 AGCATACTCTGCTGTC HLA-DQB1 -0.0416513307 1
## 3442 TGGGCGTCAGCGTTCG HLA-DQB1 -1.1690882823 1
## 3443 TCGTAGAGTTCGTCTC HLA-DQB1 -1.2061565695 0
## 3444 GACAGAGGTACCGCTG HLA-DQB1 0.7750016397 1
## 3445 TCTCATACACATAACC HLA-DQB1 -0.2705230201 0
## 3446 TGGGCGTCATTGAGCT HLA-DQB1 -1.1276306597 0
## 3447 CATGACACATGTCTCC HLA-DQB1 -0.1221947620 0
## 3448 GAATAAGGTGCACGAA HLA-DQB1 1.7198397711 1
## 3449 TGCGCAGCAAGCGAGT HLA-DQB1 -1.7182965395 0
## 3450 CTTCTCTCAGCCAGAA HLA-DQB1 -1.2927395166 0
## 3451 AAGCCGCAGTGGCACA HLA-DQB1 -1.5088593252 0
## 3452 CTCTACGAGTGGACGT HLA-DQB1 0.6285949616 0
## 3453 GTCATTTTCTATCCCG HLA-DQB1 0.8549042552 0
## 3454 CGAGCACAGCCACTAT HLA-DQB1 0.9091220238 1
## 3455 AGTAGTCGTAACGACG HLA-DQB1 -0.1533146072 0
## 3456 GACGTGCAGAGGGATA HLA-DQB1 -1.1238958634 0
## 3457 GTCTTCGTCCAACCAA HLA-DQB1 -1.3610764118 0
## 3458 CAAGGCCTCGCCCTTA HLA-DQB1 0.5681593341 0
## 3459 TGTGGTACATGGTTGT HLA-DQB1 1.5115212179 0
## 3460 CCTCAGTTCGAATGCT HLA-DQB1 0.6162829255 1
## 3461 ACCGTAATCTGAGGGA HLA-DQB1 1.1003875151 1
## 3462 GTTAAGCCAGTTCATG HLA-DQB1 -0.1583768938 0
## 3463 CTGCCTATCAATCTCT HLA-DQB1 -1.4541970081 0
## 3464 GACGGCTTCTCCAACC HLA-DQB1 0.7582329785 0
## 3465 TTTCCTCCAGTTCCCT HLA-DQB1 0.7727189649 0
## 3466 GCGCCAAAGCCCTAAT HLA-DQB1 0.9832168009 0
## 3467 CCACCTATCCCGACTT HLA-DQB1 -1.3748240839 1
## 3468 TTTATGCCAGGGCATA HLA-DQB1 1.8369855630 1
## 3469 TACAGTGTCGCGGATC HLA-DQB1 -1.3567841685 1
## 3470 AGCTCTCCACCACGTG HLA-DQB1 1.3334484892 0
## 3471 GTGGGTCCATTGAGCT HLA-DQB1 1.6015781400 1
## 3472 GGGATGACAGACTCGC HLA-DQB1 -1.2681748025 0
## 3473 ACACCAAGTTCGGGCT HLA-DQB1 1.6342026607 1
## 3474 TGATTTCAGCTATGCT HLA-DQB1 -0.1232346537 1
## 3475 TGGCCAGAGAGGGCTT HLA-DQB1 0.4433343415 0
## 3476 TCGGTAAGTAAAGTCA HLA-DQB1 -0.0790612910 0
## 3477 TGAAAGAGTCCCTTGT HLA-DQB1 1.1634035395 1
## 3478 CCGTGGATCGTTTATC HLA-DQB1 0.3473348965 1
## 3479 GAACCTATCCTCAACC HLA-DQB1 1.1493758472 0
## 3480 GCGCAGTCATCCAACA HLA-DQB1 0.5189266033 1
## 3481 ACATGGTTCGCGCCAA HLA-DQB1 0.7302298180 1
## 3482 CTTGGCTGTACGCACC HLA-DQB1 0.1253329494 0
## 3483 AGATTGCAGGCCCGTT HLA-DQB1 -1.3324471923 0
## 3484 AGGCCGTGTTACGGAG HLA-DQB1 1.6468584749 1
## 3485 GGTGTTAGTTAAGATG HLA-DQB1 0.9278660970 0
## 3486 GGAATAATCCTGTAGA HLA-DQB1 0.6919176665 1
## 3487 TATTACCGTATTAGCC HLA-DQB1 0.8933752628 1
## 3488 ATAACGCGTTAGTGGG HLA-DQB1 -0.0213259501 0
## 3489 AAACGGGGTTATCCGA HLA-DQB1 0.5350151765 0
## 3490 TGTGGTATCGTTTAGG HLA-DQB1 1.3141615621 1
## 3491 ATCACGAGTATGAATG HLA-DQB1 1.0863092447 1
## 3492 CAGCAGCTCACCTCGT HLA-DQB1 0.7173946211 0
## 3493 CCAATCCGTATTACCG HLA-DQB1 -0.1373789033 1
## 3494 TTCTACATCACATAGC HLA-DQB1 -0.0258188830 0
## 3495 TGTCCCATCGTATCAG HLA-DQB1 -1.2133324504 0
## 3496 AGCTCTCAGTGTTTGC HLA-DQB1 -1.1428249922 0
## 3497 CAACCTCAGTAACCCT HLA-DQB1 0.6082146461 0
## 3498 GTGGGTCAGGTAAACT HLA-DQB1 1.0686834434 0
## 3499 TAAGTGCCACGTCAGC HLA-DQB1 0.1856681334 1
## 3500 GACCTGGCAGCCACCA HLA-DQB1 -1.3129097889 0
## 3501 ACAGCCGCAGGATCGA HLA-DQB1 -0.0665080363 0
## 3502 AACTCCCCAGCTCGCA HLA-DQB1 -1.2481519031 0
## 3503 GGAAAGCGTCTCTCGT HLA-DQB1 -1.3453496475 0
## 3504 CGCTTCAAGCAGGTCA HLA-DQB1 1.2558426547 1
## 3505 GATCGCGAGAAGGGTA HLA-DQB1 0.8319022219 1
## 3506 AAGCCGCCAGGATTGG HLA-DQB1 0.8825081910 1
## 3507 ATTGGACGTCGTGGCT HLA-DQB1 0.5785343991 0
## 3508 CCCATACCACTAAGTC HLA-DQB1 -1.5742885768 0
## 3509 TCTCTAATCCCATTTA HLA-DQB1 0.8995714873 1
## 3510 TCGTAGAGTGGTACAG HLA-DQB1 0.4989941973 1
## 3511 AAACGGGAGAGACGAA HLA-DQB1 -0.2182604673 0
## 3512 GACTACATCACCACCT HLA-DQB1 0.3879046831 0
## 3513 GAAACTCAGTTGAGTA HLA-DQB1 -1.4893976229 0
## 3514 CCCTCCTTCCTCCTAG HLA-DQB1 1.4822259622 1
## 3515 GCGACCATCACGGTTA HLA-DQB1 0.3503724625 0
## 3516 TCTCTAAAGAGTCGGT HLA-DQB1 1.6450133742 1
## 3517 GGCTCGATCTCACATT HLA-DQB1 1.1245189397 0
## 3518 CTGATAGAGGCAGGTT HLA-DQB1 0.7288691182 1
## 3519 CATGCCTAGGAGTTTA HLA-DQB1 1.0259671576 1
## 3520 TGGCTGGTCAGCCTAA HLA-DQB1 -0.0389883239 0
## 3521 TCAGATGTCGTTACAG HLA-DQB1 -1.4811250527 0
## 3522 CAGCTGGGTTATGTGC HLA-DQB1 0.6125869352 0
## 3523 GGAACTTAGTCGTACT HLA-DQB1 -0.1114956446 0
## 3524 CCGGGATCACCGGAAA HLA-DQB1 1.1830695435 1
## 3525 CCTTCGATCAAAGACA HLA-DQB1 -1.3836288222 0
## 3526 CGAGAAGGTATCGCAT HLA-DQB1 0.7766976947 1
## 3527 CCTAAAGAGACTGGGT HLA-DQB1 0.1475261258 0
## 3528 CAGATCACATTGGCGC HLA-DQB1 1.1434548011 1
## 3529 CTAGCCTAGCTGGAAC HLA-DQB1 0.3055972469 1
## 3530 ATTGGTGTCTCGTATT HLA-DQB1 -1.6079165438 0
## 3531 GGGAATGTCAAAGTAG HLA-DQB1 -1.3657301133 1
## 3532 CCATGTCCACGGCCAT HLA-DQB1 -1.4209234387 0
## 3533 GGCAATTCATATGGTC HLA-DQB1 -1.1962019318 0
## 3534 CTGTGCTCATGTCCTC HLA-DQB1 -1.3265246158 0
## 3535 TTAACTCCAACGCACC HLA-DQB1 1.0940302219 0
## 3536 CGAACATAGCGGCTTC HLA-DQB1 -1.3412461224 0
## 3537 TCGCGTTAGGCACATG HLA-DQB1 1.6645472725 1
## 3538 GGGTTGCCAAACTGCT HLA-DQB1 0.4295623860 0
## 3539 ATAAGAGCAGGTGCCT HLA-DQB1 -0.0285247498 1
## 3540 CGGACACGTATTCGTG HLA-DQB1 -1.6508100590 0
## 3541 CTGATAGTCACGACTA HLA-DQB1 -1.1898944549 0
## 3542 GAACATCGTGAGTATA HLA-DQB1 0.7724967652 0
## 3543 TGCTACCAGTGGTCCC HLA-DQB1 -1.3682835008 0
## 3544 GCTGGGTAGTCTTGCA HLA-DQB1 -1.5341635353 0
## 3545 TACGGATGTCTAACGT HLA-DQB1 0.2708218204 0
## 3546 TGGGCGTCAATGGATA HLA-DQB1 1.7397040959 1
## 3547 CTGCTGTCATTTGCTT HLA-DQB1 -1.4074786291 0
## 3548 GGGCATCAGCAGCCTC HLA-DQB1 1.6728561888 1
## 3549 CGTGAGCAGACTAGAT HLA-DQB1 -1.2746813640 0
## 3550 CAGCGACCACACCGAC HLA-DQB1 -0.1495415199 0
## 3551 CCCAATCCAGTTAACC HLA-DQB1 -1.5196962192 0
## 3552 CAGCGACTCAGCGACC HLA-DQB1 0.3666624983 0
## 3553 GAGCAGAAGCTATGCT HLA-DQB1 -1.5187214107 0
## 3554 CTCTGGTTCACTTCAT HLA-DQB1 1.1695366121 0
## 3555 CGCGTTTCAGCTGTGC HLA-DQB1 -1.4443397643 1
## 3556 GGACGTCCACCTCGGA HLA-DQB1 -1.3157001596 0
## 3557 TAGTTGGAGAGTTGGC HLA-DQB1 -0.0553692778 0
## 3558 ATTGGTGTCGGAATCT HLA-DQB1 0.5095517380 0
## 3559 GAATGAACACGGCCAT HLA-DQB1 -1.4355455382 0
## 3560 GTGCATACAAGGTGTG HLA-DQB1 0.6867085231 0
## 3561 GGAATAAGTCGGCACT HLA-DQB1 0.2297553746 0
## 3562 ACCCACTTCCAAAGTC HLA-DQB1 -1.2743486396 0
## 3563 ACTATCTCAATTCCTT HLA-DQB1 -1.4870066880 1
## 3564 AGCATACAGTGGGATC HLA-DQB1 -0.0725221612 0
## 3565 GTCATTTTCCGCATCT HLA-DQA2 -0.2244172089 1
## 3566 ATAAGAGAGGAGTTGC HLA-DQA2 1.3977777925 1
## 3567 CATTATCCATGGTCTA HLA-DQA2 1.2232162141 0
## 3568 CTTAGGAGTGGCGAAT HLA-DQA2 -0.3479184513 0
## 3569 CATCAGAAGCACCGCT HLA-DQA2 0.8609831697 0
## 3570 GCGGGTTAGTAGCCGA HLA-DQA2 -0.4114949794 0
## 3571 CAGAGAGAGCGCCTTG HLA-DQA2 -0.3194187964 0
## 3572 CTGAAGTCAGACACTT HLA-DQA2 0.6702912436 0
## 3573 GGACGTCCAGGTGCCT HLA-DQA2 1.2700585963 1
## 3574 AAAGCAAGTGGTGTAG HLA-DQA2 -0.5308534716 0
## 3575 TCTCATACAGGGCATA HLA-DQA2 -0.4696164403 0
## 3576 AACTCAGGTACTCGCG HLA-DQA2 -0.3986131943 0
## 3577 CACATTTGTGAGTATA HLA-DQA2 1.2607804662 0
## 3578 ACTTTCAAGGTGTTAA HLA-DQA2 1.2742938327 1
## 3579 TGCCCATCAGACGCAA HLA-DQA2 -0.5979536581 0
## 3580 CTAAGACCAATGCCAT HLA-DQA2 -0.5034785546 0
## 3581 CGGAGCTCATTTGCTT HLA-DQA2 -0.6262875859 0
## 3582 GAGCAGATCGACGGAA HLA-DQA2 -0.4963537661 0
## 3583 TAAACCGAGATCGATA HLA-DQA2 -0.5651138283 0
## 3584 GTCTCGTGTACATCCA HLA-DQA2 -0.4366581963 0
## 3585 GTATCTTAGACCCACC HLA-DQA2 0.8070242530 1
## 3586 GAGCAGAAGAGCCTAG HLA-DQA2 1.9193796624 1
## 3587 GTGCAGCTCACATAGC HLA-DQA2 -0.5930455307 0
## 3588 CCTATTAGTAAACCTC HLA-DQA2 -0.6009642473 0
## 3589 AGAGTGGAGTTTAGGA HLA-DQA2 -0.5923416374 0
## 3590 TACGGGCAGGTGATTA HLA-DQA2 0.8198172237 0
## 3591 ACTATCTCAATCTACG HLA-DQA2 -0.6020797862 0
## 3592 CGAGCCATCAGGCAAG HLA-DQA2 -0.5230534805 0
## 3593 CGAATGTCAATTGCTG HLA-DQA2 0.6325667109 0
## 3594 TACGGTATCGTTACGA HLA-DQA2 1.3134566823 0
## 3595 CTGTGCTCAAGGTGTG HLA-DQA2 -0.5397986567 0
## 3596 CCATGTCGTAACGACG HLA-DQA2 0.7362030102 0
## 3597 TGCTGCTAGACACTAA HLA-DQA2 0.6759453852 0
## 3598 ACGGGTCTCGCTTAGA HLA-DQA2 0.7844751851 0
## 3599 ACGAGGAAGGCTAGCA HLA-DQA2 -0.5124753334 0
## 3600 GCACTCTGTCGGCACT HLA-DQA2 -0.3820433019 0
## 3601 ATCATGGGTTTAAGCC HLA-DQA2 -0.6511206754 0
## 3602 GCATGTAGTAAAGGAG HLA-DQA2 -0.4178479627 0
## 3603 CAACTAGAGTGGGCTA HLA-DQA2 -0.5414258255 0
## 3604 AACACGTCAATCAGAA HLA-DQA2 2.2404562925 1
## 3605 AAAGTAGGTGTCTGAT HLA-DQA2 1.2414397558 1
## 3606 CTCATTATCGCTGATA HLA-DQA2 -0.7997862810 0
## 3607 TACTCGCCAACGCACC HLA-DQA2 -0.7037508220 0
## 3608 GGACATTGTCCTGCTT HLA-DQA2 2.5000000000 1
## 3609 ACTGAACAGAGCTGGT HLA-DQA2 0.7468759877 0
## 3610 CTCGGGAAGTGCAAGC HLA-DQA2 -0.5729635064 0
## 3611 AGCTCCTAGCATGGCA HLA-DQA2 -0.5753757274 0
## 3612 TATTACCGTCGACTGC HLA-DQA2 -0.6792050351 0
## 3613 GAACGGACATTTCACT HLA-DQA2 0.7130534162 0
## 3614 CACAAACTCCCGGATG HLA-DQA2 -0.7013567438 0
## 3615 GCTCCTAAGGGAGTAA HLA-DQA2 0.6494600069 0
## 3616 GACTAACCATCACGTA HLA-DQA2 0.7187279425 1
## 3617 TACTCGCTCTTAACCT HLA-DQA2 0.6747604862 0
## 3618 AGGCCGTCAGGAACGT HLA-DQA2 0.6216190592 0
## 3619 CCACTACAGTGCTGCC HLA-DQA2 -0.4678668113 0
## 3620 ATCCACCCAAGCCGTC HLA-DQA2 0.6589209950 0
## 3621 GAGTCCGAGACTGTAA HLA-DQA2 -0.6269834909 0
## 3622 AAGCCGCCAGAAGCAC HLA-DQA2 -0.6598287495 0
## 3623 GACACGCCAGATTGCT HLA-DQA2 0.8343041031 0
## 3624 CGACTTCAGGCTACGA HLA-DQA2 1.2600806190 0
## 3625 GGGTTGCCAGTAAGCG HLA-DQA2 0.7477037273 0
## 3626 AGTGAGGGTCAGAATA HLA-DQA2 -0.6341804677 0
## 3627 GATCTAGCAGCCACCA HLA-DQA2 -0.7402763885 0
## 3628 ACGAGGACAAGACGTG HLA-DQA2 -0.5731656873 0
## 3629 CATATGGCAAGCCGCT HLA-DQA2 -0.5354731044 0
## 3630 TTATGCTCAGACGCTC HLA-DQA2 -0.7537098427 0
## 3631 AGTGTCAAGTCGCCGT HLA-DQA2 -0.6890112072 0
## 3632 AAGGCAGGTCTGCCAG HLA-DQA2 -0.6621257981 0
## 3633 TCAGGATAGCCCGAAA HLA-DQA2 -0.6103331539 0
## 3634 CCACTACCACTAGTAC HLA-DQA2 -0.7288156892 1
## 3635 AGCAGCCTCGCCAAAT HLA-DQA2 -0.6438587423 0
## 3636 CTGCCTATCCATGCTC HLA-DQA2 1.4073843944 0
## 3637 GCTGCAGCATAGTAAG HLA-DQA2 1.2889293732 0
## 3638 GCGCAGTTCAGTTCGA HLA-DQA2 -0.6134847954 1
## 3639 GGGCATCGTAGCGCTC HLA-DQA2 -0.6320736408 0
## 3640 CTAATGGGTTACGTCA HLA-DQA2 0.6478383055 0
## 3641 ATTCTACGTTATCGGT HLA-DQA2 -0.7998002060 0
## 3642 GAAATGATCAGCTGGC HLA-DQA2 -0.6291135530 0
## 3643 TGCTACCTCGTCCAGG HLA-DQA2 -0.6365099624 0
## 3644 ACATGGTCACTTACGA HLA-DQA2 -0.7369609284 0
## 3645 ACTTTCAAGCGTTGCC HLA-DQA2 0.6895016446 0
## 3646 CCTACACGTAAACCTC HLA-DQA2 -0.6846723453 0
## 3647 ATTGGTGAGATCCCAT HLA-DQA2 -0.5480823457 0
## 3648 CCGGGATCACAGACAG HLA-DQA2 0.7437329996 0
## 3649 CAGTAACTCTCTTGAT HLA-DQA2 -0.7364448828 0
## 3650 ATCTACTCAATAGCGG HLA-DQA2 -0.6978686273 0
## 3651 ACCCACTGTTAAGAAC HLA-DQA2 -0.7355935139 1
## 3652 ACATACGTCTGCTTGC HLA-DQA2 -0.6546100365 0
## 3653 CGTCTACGTTGAACTC HLA-DQA2 0.8287028233 0
## 3654 ATTATCCCAGCAGTTT HLA-DQA2 1.4153190977 0
## 3655 GAAACTCTCGTTACGA HLA-DQA2 -0.6165397381 0
## 3656 GATGAAACATCATCCC HLA-DQA2 0.7422472696 0
## 3657 CACAGTATCTGTCCGT HLA-DQA2 0.8963328116 0
## 3658 TGAAAGAAGGAGCGAG HLA-DQA2 -0.6655009965 0
## 3659 CCGGTAGAGACCGGAT HLA-DQA2 -0.6712904632 0
## 3660 TGCGGGTTCTAACCGA HLA-DQA2 0.8062007048 1
## 3661 GGCGACTTCGCGCCAA HLA-DQA2 -0.6471302887 0
## 3662 GGGATGAAGTCGCCGT HLA-DQA2 -0.6939134675 0
## 3663 GATTCAGGTACAGACG HLA-DQA2 -0.6597216852 0
## 3664 TAGACCACAAGAAGAG HLA-DQA2 -0.6300010991 0
## 3665 AATCCAGGTCAGAGGT HLA-DQA2 -0.6906839327 1
## 3666 TGAGCCGCAATGGACG HLA-DQA2 -0.5550362398 0
## 3667 CACATAGGTACTCTCC HLA-DQA2 0.8583105916 0
## 3668 CATGGCGAGCAATATG HLA-DQA2 0.7683039877 1
## 3669 CAGTAACGTTATTCTC HLA-DQA2 1.8765825048 1
## 3670 GCGAGAAGTTCCGTCT HLA-DQA2 -0.6457671912 0
## 3671 TTTACTGGTCCCTTGT HLA-DQA2 -0.5935938762 1
## 3672 ATCATGGCACGAAATA HLA-DQA2 -0.6304983960 0
## 3673 CGCCAAGAGGCAGTCA HLA-DQA2 -0.7554128776 0
## 3674 CGTCCATGTCCAGTAT HLA-DQA2 -0.6765048520 0
## 3675 TGGCGCATCCATTCTA HLA-DQA2 -0.6054496056 0
## 3676 CCCATACGTAGCTTGT HLA-DQA2 -0.5408072960 0
## 3677 GCATGCGGTGCTGTAT HLA-DQA2 -0.6099434509 0
## 3678 TTCTTAGCATGCTAGT HLA-DQA2 -0.5602975303 0
## 3679 TGCGCAGAGTGGACGT HLA-DQA2 -0.7931031111 1
## 3680 ATTATCCGTTGCTCCT HLA-DQA2 -0.7312947657 0
## 3681 AGAATAGAGACTAGGC HLA-DQA2 -0.6932216671 0
## 3682 CCTACACAGCTGCAAG HLA-DQA2 -0.6973375682 1
## 3683 GACAGAGAGTGCTGCC HLA-DQA2 -0.6940574614 0
## 3684 GTTCGGGTCCCAAGAT HLA-DQA2 1.9154216212 0
## 3685 AGTAGTCGTAAGCACG HLA-DQA2 -0.6171123401 0
## 3686 CTCACACGTACCTACA HLA-DQA2 -0.7825202812 0
## 3687 GCAGTTAAGTGGGTTG HLA-DQA2 -0.5063847850 0
## 3688 GTCAAGTCAGCTCGAC HLA-DQA2 -0.5441513757 1
## 3689 GCTGCGATCCCTAACC HLA-DQA2 1.9247263426 1
## 3690 GATCGTATCCCTAACC HLA-DQA2 -0.6868862139 0
## 3691 TGAGAGGTCCGTAGTA HLA-DQA2 -0.7390732080 0
## 3692 CTCGTCAGTGCACTTA HLA-DQA2 -0.6369342817 0
## 3693 AGCATACAGCAAATCA HLA-DQA2 -0.6864676965 0
## 3694 TCGGGACGTGTCAATC HLA-DQA2 -0.6847907149 0
## 3695 ATGCGATGTAAACACA HLA-DQA2 -0.6170890281 0
## 3696 CATGACACACAACGTT HLA-DQA2 -0.4974841261 0
## 3697 GCTTGAAGTGCTAGCC HLA-DQA2 -0.4691565649 0
## 3698 TTTGGTTTCTCTTATG HLA-DQA2 -0.6364810301 0
## 3699 ACACCCTGTGAAATCA HLA-DQA2 0.9738757623 0
## 3700 ATCATGGTCCCTCAGT HLA-DQA2 -0.6183296916 0
## 3701 CCTCTGACAATCAGAA HLA-DQA2 -0.7626399238 0
## 3702 ACATACGAGACACTAA HLA-DQA2 0.5751458335 0
## 3703 TCACAAGTCCGTAGGC HLA-DQA2 1.6853666183 1
## 3704 GCAGTTAGTCCAGTGC HLA-DQA2 0.7448823529 1
## 3705 AGTGAGGGTTACAGAA HLA-DQA2 -0.7053325069 0
## 3706 CACACAAGTAATCACC HLA-DQA2 -0.7139173396 0
## 3707 GATCGCGAGGCTAGAC HLA-DQA2 -0.5921517085 0
## 3708 CTCGTACTCCTTTCGG HLA-DQA2 -0.5359417142 0
## 3709 ATCCACCTCGGCGGTT HLA-DQA2 -0.6795108227 0
## 3710 GAAGCAGAGCTAGTTC HLA-DQA2 0.7372880397 0
## 3711 CAGTCCTAGTGTCTCA HLA-DQA2 -0.6122304332 0
## 3712 CGCTTCACAATGGATA HLA-DQA2 -0.5999844850 0
## 3713 TCCCGATTCATATCGG HLA-DQA2 -0.6579431355 0
## 3714 TGTGGTACATATACCG HLA-DQA2 -0.6146310574 0
## 3715 TACCTTACACTACAGT HLA-DQA2 -0.7511850743 1
## 3716 GTAGGCCGTCCGTCAG HLA-DQA2 -0.6872508910 0
## 3717 CAGAATCCAATCAGAA HLA-DQA2 -0.6304042958 0
## 3718 GGATTACTCTGTGCAA HLA-DQA2 0.7273655019 1
## 3719 GTCGTAAGTTTGTTTC HLA-DQA2 -0.5917150995 0
## 3720 GATCGTAAGCCAGTAG HLA-DQA2 -0.7057372702 0
## 3721 GACTACAGTTAAAGAC HLA-DQA2 -0.7460471312 0
## 3722 CATGACACAACACCTA HLA-DQA2 0.7353969543 0
## 3723 CACCAGGTCACGCGGT HLA-DQA2 -0.6254498098 0
## 3724 GTCTTCGTCTGAGTGT HLA-DQA2 -0.5555333753 1
## 3725 CCTTCGAAGTGGGATC HLA-DQA2 -0.7663680696 0
## 3726 GTGCGGTGTCCTGCTT HLA-DQA2 0.7786749122 0
## 3727 GTCACAACATGCCTTC HLA-DQA2 -0.7426631962 1
## 3728 CAGAGAGTCAGTCAGT HLA-DQA2 -0.7195668389 0
## 3729 GTGCGGTGTACTCTCC HLA-DQA2 0.7772303809 0
## 3730 CAGCTAATCAAGATCC HLA-DQA2 0.7258213877 1
## 3731 CAAGATCGTTGGGACA HLA-DQA2 -0.7554128776 0
## 3732 TTTATGCCATCACAAC HLA-DQA2 -0.7129998534 0
## 3733 CGGTTAATCCCAAGTA HLA-DQA2 1.3117389885 0
## 3734 TAGCCGGTCCGTAGTA HLA-DQA2 -0.7474079756 1
## 3735 ACGAGCCGTGTTTGTG HLA-DQA2 1.8849718682 0
## 3736 AGCATACCAAACCCAT HLA-DQA2 -0.6147532079 0
## 3737 GAAATGATCAACACTG HLA-DQA2 1.8016931264 0
## 3738 TATCTCACATAACCTG HLA-DQA2 -0.6329152042 0
## 3739 CCGTACTCACTTCTGC HLA-DQA2 1.4516427847 1
## 3740 CTAGAGTTCAGAGGTG HLA-DQA2 -0.6436014183 0
## 3741 CTGATAGCATACAGCT HLA-DQA2 -0.6765068391 0
## 3742 TCGAGGCCACGGTAGA HLA-DQA2 1.4723290961 1
## 3743 GATCAGTTCACTTATC HLA-DQA2 -0.5763700941 0
## 3744 GTTTCTAAGCCCTAAT HLA-DQA2 -0.6200651422 0
## 3745 CAGCTGGAGGAATTAC HLA-DQA2 1.2933169544 1
## 3746 AGAGTGGTCGATCCCT HLA-DQA2 -0.8102508163 0
## 3747 CATGGCGCAACTGCTA HLA-DQA2 -0.6200293847 0
## 3748 CTGGTCTGTATATGGA HLA-DQA2 2.5000000000 1
## 3749 CGTCACTCACAGGAGT HLA-DQA2 -0.6656741582 0
## 3750 AACTGGTTCAACCAAC HLA-DQA2 2.0349394280 1
## 3751 CCATTCGCAGGGAGAG HLA-DQA2 -0.6381564798 0
## 3752 CATCAGATCTTCAACT HLA-DQA2 -0.7015015614 0
## 3753 GAATGAATCAGGCAAG HLA-DQA2 0.8420824002 0
## 3754 TGTCCCATCGAATGCT HLA-DQA2 0.7011977109 0
## 3755 AGTGGGACAGCCAATT HLA-DQA2 -0.7664433104 0
## 3756 AGAGCTTTCACATGCA HLA-DQA2 1.4492508832 0
## 3757 TGCGGGTTCTGCAGTA HLA-DQA2 -0.7745407371 0
## 3758 GTCGTAAGTCGGCACT HLA-DQA2 -0.4061127522 0
## 3759 CTCGAGGTCGGAGCAA HLA-DQA2 -0.6905170075 0
## 3760 CTACACCAGATGAGAG HLA-DQA2 -0.7513159156 0
## 3761 ACGGCCATCTTACCTA HLA-DQA2 -0.7124639902 0
## 3762 CCCAGTTCACACCGAC HLA-DQA2 1.3182686718 1
## 3763 TCGGGACTCGGATGGA HLA-DQA2 1.8815724498 1
## 3764 CATCGGGTCCCGACTT HLA-DQA2 0.8047439049 1
## 3765 CTTAACTGTAAGGATT HLA-DQA2 -0.7989785976 0
## 3766 AACCATGAGCGTAATA HLA-DQA2 1.3840228783 0
## 3767 TCAGATGGTCTTCTCG HLA-DQA2 -0.7167332971 0
## 3768 CTCACACTCCCAACGG HLA-DQA2 -0.7711201099 0
## 3769 CCATGTCAGGATGGAA HLA-DQA2 0.8840773663 0
## 3770 GGGTCTGGTACTTGAC HLA-DQA2 -0.7318133349 0
## 3771 GGAACTTCACAGTCGC HLA-DQA2 -0.7552654082 0
## 3772 GACCTGGCACATCCAA HLA-DQA2 0.8648928322 0
## 3773 CAGTCCTCAAGACACG HLA-DQA2 2.5000000000 1
## 3774 AGATCTGCATATGGTC HLA-DQA2 0.8907079498 0
## 3775 CATCAGAGTATTCTCT HLA-DQA2 -0.7949113337 0
## 3776 TGCACCTTCGATAGAA HLA-DQA2 -0.7017686015 0
## 3777 CCTACACTCCCAAGTA HLA-DQA2 -0.7019389617 0
## 3778 ACTTTCATCGTAGATC HLA-DQA2 0.8077605746 1
## 3779 TTGCGTCCACCATGTA HLA-DQA2 -0.7586757037 0
## 3780 AAATGCCAGGTGCTAG HLA-DQA2 -0.5761360054 0
## 3781 ATGCGATGTCCATCCT HLA-DQA2 0.7796403218 1
## 3782 CCAGCGAAGCCACTAT HLA-DQA2 -0.7392737338 0
## 3783 TACTTGTAGTGTACTC HLA-DQA2 -0.7925283458 0
## 3784 AGGGATGTCTCGCTTG HLA-DQA2 0.7877050976 1
## 3785 TGTCCCAGTATTAGCC HLA-DQA2 -0.8105600075 0
## 3786 TGCTACCTCGCACTCT HLA-DQA2 -0.8769329717 0
## 3787 GTAACGTCAGTATAAG HLA-DQA2 1.3210949255 1
## 3788 GCGCAACGTTCGTTGA HLA-DQA2 2.0495480794 1
## 3789 GCGAGAACATGAGCGA HLA-DQA2 1.3845502444 1
## 3790 TGCCCTAGTGCACCAC HLA-DQA2 -0.7433301660 1
## 3791 CTAGAGTGTAAACACA HLA-DQA2 1.5532344907 0
## 3792 AGTAGTCCACCGGAAA HLA-DQA2 -0.6811132109 0
## 3793 CATATTCTCAGCGATT HLA-DQA2 1.9933607015 0
## 3794 GAATGAAGTAACGACG HLA-DQA2 -0.6170685980 0
## 3795 GATCAGTAGTACTTGC HLA-DQA2 0.8052433149 0
## 3796 CAAGAAACAGGATTGG HLA-DQA2 -0.7154567824 1
## 3797 CCTATTATCAACACTG HLA-DQA2 -0.6981185947 0
## 3798 CAGCAGCTCTGCGGCA HLA-DQA2 0.8573820623 0
## 3799 ATAAGAGAGCTGCGAA HLA-DQA2 2.0523551227 0
## 3800 AGATCTGCACCTATCC HLA-DQA2 -0.8024812632 0
## 3801 GACACGCGTAGAGCTG HLA-DQA2 1.8290711985 0
## 3802 TACACGAAGCTAGGCA HLA-DQA2 -0.7672590873 0
## 3803 AACACGTTCCGAAGAG HLA-DQA2 -0.6909213013 0
## 3804 TTAACTCGTGTAATGA HLA-DQA2 1.3577728260 1
## 3805 TGGCGCAGTTCAGACT HLA-DQA2 0.8679162742 0
## 3806 CATCAGAGTCTAGTCA HLA-DQA2 -0.8093959902 1
## 3807 CTAGAGTAGCATGGCA HLA-DQA2 -0.9032081988 0
## 3808 TACGGTAAGCGTGAAC HLA-DQA2 -0.6051526521 0
## 3809 TGACTTTTCGGATGTT HLA-DQA2 -0.8115434293 1
## 3810 CTCACACTCCTACAGA HLA-DQA2 1.4377350806 0
## 3811 CCGTACTCACTGAAGG HLA-DQA2 -0.5625578202 0
## 3812 ATAACGCGTGGAAAGA HLA-DQA2 -0.7007300691 0
## 3813 GCTTGAAAGCTAGGCA HLA-DQA2 2.1613313066 1
## 3814 AAGTCTGGTGTTGGGA HLA-DQA2 -0.7864108827 0
## 3815 CGATCGGGTACAGCAG HLA-DQA2 1.8264368523 0
## 3816 AGTAGTCTCGATGAGG HLA-DQA2 0.8341223819 0
## 3817 CGACCTTCAGACGCTC HLA-DQA2 2.5000000000 1
## 3818 GCATACACATGCAACT HLA-DQA2 1.4719486415 0
## 3819 TCCCGATTCGCAGGCT HLA-DQA2 -0.5724431494 0
## 3820 TTAGGCAAGATCGATA HLA-DQA2 1.6723126231 1
## 3821 TCGTACCAGGCAAAGA HLA-DQA2 -0.7629228182 0
## 3822 GGATGTTGTATAGGGC HLA-DQA2 -0.8309185440 0
## 3823 AATCCAGCAGAGTGTG HLA-DQA2 -0.6747875629 0
## 3824 CATGCCTCACGGCCAT HLA-DQA2 0.8417919906 1
## 3825 CTCGAAACACATGACT HLA-DQA2 -0.8575138126 0
## 3826 CTGCCTAGTTGCGTTA HLA-DQA2 -0.7832564494 0
## 3827 GGCGACTAGACAGAGA HLA-DQA2 2.2331757171 1
## 3828 TACAGTGGTGTAATGA HLA-DQA2 -0.7591977985 1
## 3829 ACGAGCCTCTTATCTG HLA-DQA2 1.5823869197 0
## 3830 GGGAATGCAAATACAG HLA-DQA2 0.8182892944 1
## 3831 TGCACCTGTACCGAGA HLA-DQA2 -0.8302921950 0
## 3832 ATCATCTTCAGTCAGT HLA-DQA2 -0.7834011279 0
## 3833 CATATTCGTACAGTTC HLA-DQA2 -0.8526364863 0
## 3834 GCATGATGTTCCACTC HLA-DQA2 -0.8069723496 0
## 3835 AAGGCAGTCACGACTA HLA-DQA2 -0.6328794069 0
## 3836 GAAACTCTCTATCCCG HLA-DQA2 -0.7080309509 0
## 3837 AGCATACTCTGCTGTC HLA-DQA2 2.3739790235 1
## 3838 TGGGCGTCAGCGTTCG HLA-DQA2 1.5920052079 1
## 3839 TCGTAGAGTTCGTCTC HLA-DQA2 0.8662964517 0
## 3840 GACAGAGGTACCGCTG HLA-DQA2 2.5000000000 1
## 3841 TCTCATACACATAACC HLA-DQA2 -0.8518276365 0
## 3842 TGGGCGTCATTGAGCT HLA-DQA2 -0.5787230796 0
## 3843 CATGACACATGTCTCC HLA-DQA2 -0.7665528800 0
## 3844 GAATAAGGTGCACGAA HLA-DQA2 -0.8330071976 1
## 3845 TGCGCAGCAAGCGAGT HLA-DQA2 -0.9760086039 0
## 3846 CTTCTCTCAGCCAGAA HLA-DQA2 -0.6819334672 0
## 3847 AAGCCGCAGTGGCACA HLA-DQA2 -0.8328160443 0
## 3848 CTCTACGAGTGGACGT HLA-DQA2 -0.6977344934 0
## 3849 GTCATTTTCTATCCCG HLA-DQA2 -0.7707934020 0
## 3850 CGAGCACAGCCACTAT HLA-DQA2 1.8893702746 1
## 3851 AGTAGTCGTAACGACG HLA-DQA2 0.7303227436 0
## 3852 GACGTGCAGAGGGATA HLA-DQA2 -0.5649492362 0
## 3853 GTCTTCGTCCAACCAA HLA-DQA2 -0.7281576500 0
## 3854 CAAGGCCTCGCCCTTA HLA-DQA2 0.8369972389 0
## 3855 TGTGGTACATGGTTGT HLA-DQA2 -0.6707975341 0
## 3856 CCTCAGTTCGAATGCT HLA-DQA2 1.6853998745 1
## 3857 ACCGTAATCTGAGGGA HLA-DQA2 1.8432949872 1
## 3858 GTTAAGCCAGTTCATG HLA-DQA2 -0.8063668058 0
## 3859 CTGCCTATCAATCTCT HLA-DQA2 -0.7955426223 0
## 3860 GACGGCTTCTCCAACC HLA-DQA2 -0.8282627448 0
## 3861 TTTCCTCCAGTTCCCT HLA-DQA2 -0.7786340630 0
## 3862 GCGCCAAAGCCCTAAT HLA-DQA2 -0.6387333856 0
## 3863 CCACCTATCCCGACTT HLA-DQA2 1.8837401283 1
## 3864 TTTATGCCAGGGCATA HLA-DQA2 -0.7066255789 1
## 3865 TACAGTGTCGCGGATC HLA-DQA2 -0.7352324710 1
## 3866 AGCTCTCCACCACGTG HLA-DQA2 -0.6194590889 0
## 3867 GTGGGTCCATTGAGCT HLA-DQA2 2.2066475087 1
## 3868 GGGATGACAGACTCGC HLA-DQA2 -0.6723041521 0
## 3869 ACACCAAGTTCGGGCT HLA-DQA2 1.9273341189 1
## 3870 TGATTTCAGCTATGCT HLA-DQA2 -0.7995757908 1
## 3871 TGGCCAGAGAGGGCTT HLA-DQA2 -0.7670119203 0
## 3872 TCGGTAAGTAAAGTCA HLA-DQA2 -0.7554417123 0
## 3873 TGAAAGAGTCCCTTGT HLA-DQA2 -0.8646346403 1
## 3874 CCGTGGATCGTTTATC HLA-DQA2 -0.9079247485 1
## 3875 GAACCTATCCTCAACC HLA-DQA2 -0.7232537380 0
## 3876 GCGCAGTCATCCAACA HLA-DQA2 -0.7543041686 1
## 3877 ACATGGTTCGCGCCAA HLA-DQA2 -0.8315417084 1
## 3878 CTTGGCTGTACGCACC HLA-DQA2 -0.5925076517 0
## 3879 AGATTGCAGGCCCGTT HLA-DQA2 -0.7088093650 0
## 3880 AGGCCGTGTTACGGAG HLA-DQA2 1.0064829269 1
## 3881 GGTGTTAGTTAAGATG HLA-DQA2 -0.9044893927 0
## 3882 GGAATAATCCTGTAGA HLA-DQA2 0.6826477317 1
## 3883 TATTACCGTATTAGCC HLA-DQA2 -0.7573837950 1
## 3884 ATAACGCGTTAGTGGG HLA-DQA2 -0.7495516302 0
## 3885 AAACGGGGTTATCCGA HLA-DQA2 0.8255196915 0
## 3886 TGTGGTATCGTTTAGG HLA-DQA2 0.6729988524 1
## 3887 ATCACGAGTATGAATG HLA-DQA2 -0.6647057520 1
## 3888 CAGCAGCTCACCTCGT HLA-DQA2 -0.8439625469 0
## 3889 CCAATCCGTATTACCG HLA-DQA2 1.3842987236 1
## 3890 TTCTACATCACATAGC HLA-DQA2 0.8330158227 0
## 3891 TGTCCCATCGTATCAG HLA-DQA2 -0.6389458013 0
## 3892 AGCTCTCAGTGTTTGC HLA-DQA2 1.6000665703 0
## 3893 CAACCTCAGTAACCCT HLA-DQA2 0.8650504846 0
## 3894 GTGGGTCAGGTAAACT HLA-DQA2 0.9301864470 0
## 3895 TAAGTGCCACGTCAGC HLA-DQA2 1.6060096396 1
## 3896 GACCTGGCAGCCACCA HLA-DQA2 -0.6991675174 0
## 3897 ACAGCCGCAGGATCGA HLA-DQA2 -0.7553091277 0
## 3898 AACTCCCCAGCTCGCA HLA-DQA2 0.9013205224 0
## 3899 GGAAAGCGTCTCTCGT HLA-DQA2 -0.7089996931 0
## 3900 CGCTTCAAGCAGGTCA HLA-DQA2 2.3447187411 1
## 3901 GATCGCGAGAAGGGTA HLA-DQA2 2.3786867515 1
## 3902 AAGCCGCCAGGATTGG HLA-DQA2 -0.7578915499 1
## 3903 ATTGGACGTCGTGGCT HLA-DQA2 -0.6986900514 0
## 3904 CCCATACCACTAAGTC HLA-DQA2 -0.8813851655 0
## 3905 TCTCTAATCCCATTTA HLA-DQA2 -0.9307288305 1
## 3906 TCGTAGAGTGGTACAG HLA-DQA2 -0.7393715825 1
## 3907 AAACGGGAGAGACGAA HLA-DQA2 2.2687549493 0
## 3908 GACTACATCACCACCT HLA-DQA2 -0.8541210490 0
## 3909 GAAACTCAGTTGAGTA HLA-DQA2 -0.8247784338 0
## 3910 CCCTCCTTCCTCCTAG HLA-DQA2 0.6786690069 1
## 3911 GCGACCATCACGGTTA HLA-DQA2 -0.5948350661 0
## 3912 TCTCTAAAGAGTCGGT HLA-DQA2 -0.7055744441 1
## 3913 GGCTCGATCTCACATT HLA-DQA2 -0.5458521935 0
## 3914 CTGATAGAGGCAGGTT HLA-DQA2 -0.6110433680 1
## 3915 CATGCCTAGGAGTTTA HLA-DQA2 -0.6347659123 1
## 3916 TGGCTGGTCAGCCTAA HLA-DQA2 -0.7857383267 0
## 3917 TCAGATGTCGTTACAG HLA-DQA2 -0.8116107969 0
## 3918 CAGCTGGGTTATGTGC HLA-DQA2 -0.7250669955 0
## 3919 GGAACTTAGTCGTACT HLA-DQA2 -0.8165226420 0
## 3920 CCGGGATCACCGGAAA HLA-DQA2 -0.8526439387 1
## 3921 CCTTCGATCAAAGACA HLA-DQA2 -0.7498108482 0
## 3922 CGAGAAGGTATCGCAT HLA-DQA2 1.7936789340 1
## 3923 CCTAAAGAGACTGGGT HLA-DQA2 -0.5743528725 0
## 3924 CAGATCACATTGGCGC HLA-DQA2 2.1764669587 1
## 3925 CTAGCCTAGCTGGAAC HLA-DQA2 -0.5415820349 1
## 3926 ATTGGTGTCTCGTATT HLA-DQA2 0.6946845199 0
## 3927 GGGAATGTCAAAGTAG HLA-DQA2 -0.7376697297 1
## 3928 CCATGTCCACGGCCAT HLA-DQA2 -0.7747574360 0
## 3929 GGCAATTCATATGGTC HLA-DQA2 -0.6240268604 0
## 3930 CTGTGCTCATGTCCTC HLA-DQA2 -0.7075407136 0
## 3931 TTAACTCCAACGCACC HLA-DQA2 -0.8160863801 0
## 3932 CGAACATAGCGGCTTC HLA-DQA2 -0.7257928057 0
## 3933 TCGCGTTAGGCACATG HLA-DQA2 1.2750902939 1
## 3934 GGGTTGCCAAACTGCT HLA-DQA2 0.7565717756 0
## 3935 ATAAGAGCAGGTGCCT HLA-DQA2 0.8098382454 1
## 3936 CGGACACGTATTCGTG HLA-DQA2 0.7240441735 0
## 3937 CTGATAGTCACGACTA HLA-DQA2 -0.6214270424 0
## 3938 GAACATCGTGAGTATA HLA-DQA2 -0.8202250859 0
## 3939 TGCTACCAGTGGTCCC HLA-DQA2 1.8888906179 0
## 3940 GCTGGGTAGTCTTGCA HLA-DQA2 0.7118243385 0
## 3941 TACGGATGTCTAACGT HLA-DQA2 -0.9347720564 0
## 3942 TGGGCGTCAATGGATA HLA-DQA2 -0.9118190822 1
## 3943 CTGCTGTCATTTGCTT HLA-DQA2 -0.7739384002 0
## 3944 GGGCATCAGCAGCCTC HLA-DQA2 -0.5576215567 1
## 3945 CGTGAGCAGACTAGAT HLA-DQA2 0.8656411407 0
## 3946 CAGCGACCACACCGAC HLA-DQA2 -0.8686977169 0
## 3947 CCCAATCCAGTTAACC HLA-DQA2 -0.8414983739 0
## 3948 CAGCGACTCAGCGACC HLA-DQA2 -0.8532287073 0
## 3949 GAGCAGAAGCTATGCT HLA-DQA2 -0.8417184545 0
## 3950 CTCTGGTTCACTTCAT HLA-DQA2 -0.6333881858 0
## 3951 CGCGTTTCAGCTGTGC HLA-DQA2 1.8024717359 1
## 3952 GGACGTCCACCTCGGA HLA-DQA2 0.8586635259 0
## 3953 TAGTTGGAGAGTTGGC HLA-DQA2 -0.7823802983 0
## 3954 ATTGGTGTCGGAATCT HLA-DQA2 -0.7431684124 0
## 3955 GAATGAACACGGCCAT HLA-DQA2 0.7990950852 0
## 3956 GTGCATACAAGGTGTG HLA-DQA2 -0.6329471805 0
## 3957 GGAATAAGTCGGCACT HLA-DQA2 1.2649628371 0
## 3958 ACCCACTTCCAAAGTC HLA-DQA2 -0.6675831343 0
## 3959 ACTATCTCAATTCCTT HLA-DQA2 1.4419363915 1
## 3960 AGCATACAGTGGGATC HLA-DQA2 -0.8284897894 0Biomarkers Ridgeplot
RidgePlot(pbmc, features.plot = top1$gene, nCol = nCols, do.sort = F)## Picking joint bandwidth of 0.256## Picking joint bandwidth of 0.208
Biomarkers Split Dot Plot
Visualize biomarker expression for each cluster, by disease
top2 <- pbmc.markers %>% group_by(cluster) %>% top_n(2, avg_logFC)
sdp <- SplitDotPlotGG(pbmc, genes.plot = top2$gene, cols.use = c("blue","red"),
x.lab.rot = T, plot.legend = T, dot.scale = 8, do.return = T, grouping.var = "dx")
Map Clusters to Known Biomarkers
- Known Monocytes Biomarkers
- Classical: CD14++ / CD16–
- Intermediate: CD14++ / CD16+
- Nonclassical: CD14+ / CD16++ (not captured in this data)
The following plots show the absolute expression of each biomarker, as opposed to avg_logFC which is dependent on the expression patterns of other cell types being compared.
Markers Dataframe
markerList <- c("CD14", "FCGR3A")
get_markerDF <- function(pbmc, markerList){
exp <- pbmc@scale.data %>% data.frame()
marker.matrix <- exp[row.names(exp) %in% markerList, ]
marker.matrix$Gene <- row.names(marker.matrix)
markerMelt <- reshape2:::melt.data.frame(marker.matrix, id.vars = "Gene", variable.name = "Cell",value.name = "Expression")
metaSelect <- pbmc@meta.data[,c("barcode", "dx", "mut","post_clustering",
"percent.mito","nGene", "nUMI")]
markerDF <- merge(markerMelt,metaSelect, by.x="Cell", by.y="barcode")
return(markerDF)
}
markerDF <- get_markerDF(pbmc, markerList)
createDT(markerDF, caption = "Known Marker Expression")Marker ANOVAs + Boxplots
# Explore expression differences between groups
marker_vs_metadata <- function(markerDF, meta_var){
# Create title from ANOVA summary
ANOVAtitle <- function(markerDF, marker){
nTests <- length(unique(markerDF$Gene))
res <- anova(lm(data = subset(markerDF, Gene==marker),
formula = Expression ~ eval(parse(text=meta_var))))
title <-paste(paste("ANOVA (",marker, " vs. ",meta_var, ")", sep=""),
": p=",round(res$`Pr(>F)`,3),
", F=",round(res$`F value`,3),
ifelse(res$`Pr(>F)`<.05/nTests,"(Significant**)",
"(Non-significant)") )
}
title = ""
for (marker in unique(markerDF$Gene) ){
print(marker)
title <- paste(title, "\n", ANOVAtitle(markerDF, marker))
}
ggplot(markerDF, aes(x=eval(parse(text=meta_var)), y=Expression, fill= Gene)) +
geom_boxplot() +
labs(title = title, x=meta_var) +
theme(plot.title = element_text( size=10)) +
scale_fill_manual(values=c("brown", "slategray"))
}ANOVA: dx
marker_vs_metadata(markerDF, "dx")## [1] "FCGR3A"
ANOVA: mut
marker_vs_metadata(markerDF, "mut") ## [1] "FCGR3A"
Defining Cell-types
Identify Cell Types By DEGs
- Classification Approach 1
- Go through each cluster and see what biomarkers they have through DGE.
- If a cluster has a known gene marker within their top N biomarkers (with the right valence +/-), classify all cells within that cluster as a given cell type.
- Drawback: The biomarkers that DGE identifies for each cluster will depend on the composition of the other cells. So some clusters may remain unidentified simply by the fact that they didn’t have the proper cells to be compared to.
identify_cellTypes_by_biomarkers <- function(pbmc.markers, topN_search=5){
top <- pbmc.markers %>% group_by(cluster) %>% top_n(topN_search, avg_logFC)
clust_cellTypes <- list()
for (clust in top$cluster){
clustSub <- top[top5$cluster==clust, ]
CD16_logFC <- subset(clustSub, gene=="CFD")$avg_logFC
cellType <- ifelse(sum(markerList %in% clustSub$gene), # Both CD14 and CD16? Great, keep going
ifelse(CD16_logFC == abs(CD16_logFC), "CD14++/CD16+", # But does CD16 have pos logfC? If so, then it's "CD14++/CD16+"
"CD14++/CD16--"), # Otherwise, it means it means CD16 logFC is neg, meaning "CD14++/CD16--"
"N/A") # If it's none of these, it's an undefined cell type
clust_cellTypes[clust] <- cellType
}
newMeta <- pbmc@meta.data
newMeta["CellType_DGE"] <- plyr::mapvalues(metaD$post_clustering, names(clust_cellTypes), as.character(clust_cellTypes) )
pbmc <- AddMetaData(pbmc, metadata = newMeta)
return(pbmc)
}
pbmc <- identify_cellTypes_by_biomarkers(pbmc.markers, 5)## Error in plyr::mapvalues(metaD$post_clustering, names(clust_cellTypes), : object 'metaD' not found# (Doesn't make sense to do bar plot because whole clusters are defined by their biomarkers)
tSNE_metadata_plot("CellType_DGE")## [1] "t-SNE Metadata plot for CellType_DGE"## Error in UseMethod("layout"): no applicable method for 'layout' applied to an object of class "c('gg', 'ggplot')"Identify Cell Types By Average Expression
- Classification Approach 2
- Alternatively, you could classify cells by their absolute expression values. E.g. If any cell expresses CD16 more than the average expression of CD16 across all cells, then classify it as CD16+.
- Drawback: The threshold for classifying a cell as either CD16+ or CD16– is defined rather arbitrarily (the average expression of CD16 in this sample isn’t necessarily biologically meaningful).
# A simplistic way of categorizing cells into CD14++/CD16+ and CD14++/CD16--,
## is by splitting cells into groups based on whether their expression is
## higher or lower than the average CD16 expression of all cells.
identify_cellTypes_by_avgExpression <- function(pbmc, markerDF){
avgMarkerExp <-markerDF %>% group_by(Gene) %>% dplyr::summarise(meanExp = mean(Expression))
avgMarkerExp <- setNames(avgMarkerExp$meanExp, avgMarkerExp$Gene)
CD16 <- markerDF[markerDF$Gene=="FCGR3A",]
CD16_group <- ifelse(CD16$Expression >= avgMarkerExp["FCGR3A"], "CD14++/CD16+", "CD14++/CD16--")
CD16["CellType_AvgExp"] <- CD16_group
# Make sure row order is same before putting back into meta.data
metaD <- pbmc@meta.data
newMeta <- merge(metaD, CD16[,c("Cell","CellType_AvgExp")], by.x="barcode", by.y="Cell")
row.names(newMeta) <- row.names(metaD)
pbmc <- AddMetaData(pbmc, metadata = newMeta)
return(pbmc)
}
pbmc <- identify_cellTypes_by_avgExpression(pbmc, markerDF)
# Get proportions of cell types in each cluster
cluster_proportions <- pbmc@meta.data %>% group_by(CellType_AvgExp, post_clustering) %>%
tally() %>%
group_by(post_clustering, CellType_AvgExp) %>%
mutate(percentTotal = n/sum(n)*100)
ggplot(cluster_proportions, aes(x=post_clustering, y=percentTotal, fill=CellType_AvgExp)) + geom_col(position = "fill") +
labs(title="Proportions of Cell-types per Cluster: \n CellType_AvgExp",
x="Cluster", y="Cell Type / Total Cells") +
scale_fill_manual(values=c("brown", "slategray"))
tSNE_metadata_plot("CellType_AvgExp")## [1] "t-SNE Metadata plot for CellType_AvgExp"## Error in UseMethod("layout"): no applicable method for 'layout' applied to an object of class "c('gg', 'ggplot')"Known Biomarkers: Heatmaps
Average Expression: By Clusters
markerDF <- markerDF %>% mutate(Cluster = post_clustering)
# Show mean exp for each marker
avgMarker <- markerDF %>% group_by(Gene, Cluster) %>% summarise(meanExp = mean(Expression))
p <- ggplot(data = avgMarker, aes(x=Gene, y=Cluster, fill=meanExp)) %>% + geom_tile() %>% + scale_fill_distiller(palette="viridis") ## Warning in pal_name(palette, type): Unknown palette viridisifelse(interactive, p %>% ggplotly() %>% toWebGL() %>% print(), print(p))
## [[1]]
## # A tibble: 2 x 4
## # Groups: Gene [1]
## Gene Cluster meanExp .group
## <chr> <chr> <dbl> <int>
## 1 FCGR3A 0 0.126 1
## 2 FCGR3A 1 -0.368 1Average Expression: By Disease
# Show mean exp for each marker
avgMarker <- markerDF %>% group_by(Gene, dx, Cluster) %>% summarise(meanExp = mean(Expression))
p <- ggplot(data = avgMarker, aes(x=Gene, y=Cluster, fill=meanExp)) %>% + geom_tile() %>% + scale_fill_distiller(palette="viridis") ## Warning in pal_name(palette, type): Unknown palette viridisifelse(interactive, p %>% ggplotly() %>% toWebGL() %>% print(), print(p))
## [[1]]
## # A tibble: 4 x 5
## # Groups: Gene, dx [2]
## Gene dx Cluster meanExp .group
## <chr> <fct> <chr> <dbl> <int>
## 1 FCGR3A control 0 0.217 1
## 2 FCGR3A control 1 -0.397 1
## 3 FCGR3A PD 0 0.0749 2
## 4 FCGR3A PD 1 -0.359 2Cells Separated
markerMelt <- reshape2::acast(markerDF, Cell~Gene, value.var="Expression", fun.aggregate = mean, drop = F, fill = 0)
#plot_ly( z = markerMelt, y=row.names(markerMelt), z=colnames(markerMelt), type="heatmap")
# dx_colors <- colorRampPalette(brewer.pal(2, "RdBu"))
# mut_colors <- colorRampPalette(brewer.pal(length(unique(pbmc@meta.data$mut)), "Set3"))
Spectral <- grDevices::colorRampPalette(RColorBrewer::brewer.pal(length(unique(pbmc@meta.data$mut)), "Spectral"))
# Spectral <- heatmaply::Spectral(length(unique(pbmc@meta.data$mut)))
heatmaply::heatmaply(markerMelt, key.title="Expression",#plot_method= "plotly",
k_row = length(unique(pbmc.markers)), dendrogram = "row",
showticklabels = c(T, F), xlab = "Known Markers", ylab = "Cells", column_text_angle = 0,
row_side_colors = pbmc@meta.data[,c("dx","mut", "CellType_DGE")], row_side_palette = Spectral
) %>% colorbar(tickfont = list(size = 12), titlefont = list(size = 14), which = 2) %>%
colorbar(tickfont = list(size = 12), titlefont = list(size = 14), which = 1)## Error in `[.data.frame`(pbmc@meta.data, , c("dx", "mut", "CellType_DGE")): undefined columns selectedKnown Biomarkers: Boxplot
ggplot(data = markerDF, aes(x=Cluster, y=Expression, fill=Gene)) %>%
+ geom_boxplot(alpha=0.5) %>% + scale_fill_manual(values=c("purple", "turquoise")) 
Known Biomarkers: tSNE
expressionTSNE <- function(pbmc, marker, colors=c("grey", "red")){
p <- FeaturePlot(object = pbmc, features.plot = marker, cols.use = colors,
reduction.use = "tsne", nCol=2, do.return = T, dark.theme = T)[[1]]
p <- ifelse(interactive, p %>% ggplotly() %>% toWebGL(), p)
}
tp1 <- expressionTSNE(pbmc, markerList[1])tp2 <- expressionTSNE(pbmc, markerList[2], colors=c("grey", "green"))subplot(tp1, tp2, titleX = T, titleY = T )## Warning: 'layout' objects don't have these attributes: 'NA'
## Valid attributes include:
## 'font', 'title', 'titlefont', 'autosize', 'width', 'height', 'margin', 'paper_bgcolor', 'plot_bgcolor', 'separators', 'hidesources', 'showlegend', 'colorway', 'datarevision', 'template', 'dragmode', 'hovermode', 'hoverdistance', 'spikedistance', 'hoverlabel', 'selectdirection', 'grid', 'calendar', 'xaxis', 'yaxis', 'ternary', 'scene', 'geo', 'mapbox', 'polar', 'radialaxis', 'angularaxis', 'direction', 'orientation', 'editType', 'legend', 'annotations', 'shapes', 'images', 'updatemenus', 'sliders', 'barmode', 'bargap', 'mapType'library(shiny)
wellPanel( fluidPage(fluidRow(column(6,tp1), column(6,tp2) ),
tags$style("html {background:black;}") ),
style = "background:black;" )## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
## Warning in charToRaw(enc2utf8(text)): argument should be a character vector of length 1
## all but the first element will be ignored
-8.6574448333296
0.228985447331326
-8.6574448333296
0.228985447331326
1
1.69726148427627
2
-8.6574448333296
0.228985447331326
-8.6574448333296
0.228985447331326
1
0
1
Label Clusters by DGE Biomarkers
current.cluster.ids <- unique(pbmc.markers$cluster) #c(0, 1, 2, 3, 4, 5, 6, 7)
top1 <- pbmc.markers %>% group_by(cluster) %>% top_n(1, avg_logFC)
new.cluster.ids <- top1$gene #c("CD4 T cells", "CD14+ Monocytes", "B cells", "CD8 T cells", "FCGR3A+ Monocytes", "NK cells", "Dendritic cells", "Megakaryocytes")
pbmc@ident <- plyr::mapvalues(x = pbmc@ident, from = current.cluster.ids, to = new.cluster.ids)
p <- TSNEPlot(object=pbmc, do.label=T, pt.size=0.5, do.return=T)
ifelse(interactive, p %>% ggplotly() %>% toWebGL() %>% print(), print(p)) 
## [[1]]
## tSNE_1 tSNE_2 ident x
## GTCATTTTCCGCATCT -8.657445e+00 0.22898545 FCER1A -8.657445e+00
## ATAAGAGAGGAGTTGC -5.176955e+00 2.76507088 FCER1A -5.176955e+00
## CATTATCCATGGTCTA 1.155586e+00 2.26353705 RNVU1-14 1.155586e+00
## CTTAGGAGTGGCGAAT 1.219443e+00 -1.46785659 RNVU1-14 1.219443e+00
## CATCAGAAGCACCGCT 6.644504e-04 4.81762700 RNVU1-14 6.644504e-04
## GCGGGTTAGTAGCCGA 4.379003e+00 3.34423767 RNVU1-14 4.379003e+00
## CAGAGAGAGCGCCTTG 6.704459e+00 -0.07468406 RNVU1-14 6.704459e+00
## CTGAAGTCAGACACTT 1.482259e+00 2.11618901 RNVU1-14 1.482259e+00
## GGACGTCCAGGTGCCT -7.422198e+00 6.70733341 FCER1A -7.422198e+00
## AAAGCAAGTGGTGTAG 4.675011e+00 0.42397557 RNVU1-14 4.675011e+00
## TCTCATACAGGGCATA -4.598105e+00 -3.24906447 RNVU1-14 -4.598105e+00
## AACTCAGGTACTCGCG 5.242496e+00 3.11792498 RNVU1-14 5.242496e+00
## CACATTTGTGAGTATA -2.980013e-01 3.84801123 RNVU1-14 -2.980013e-01
## ACTTTCAAGGTGTTAA -5.514153e+00 1.72482926 FCER1A -5.514153e+00
## TGCCCATCAGACGCAA 6.670565e+00 7.60624163 RNVU1-14 6.670565e+00
## CTAAGACCAATGCCAT -4.931751e-01 -0.51975752 RNVU1-14 -4.931751e-01
## CGGAGCTCATTTGCTT -3.166285e+00 -5.11813943 RNVU1-14 -3.166285e+00
## GAGCAGATCGACGGAA 2.853900e-01 2.60195317 RNVU1-14 2.853900e-01
## TAAACCGAGATCGATA -1.165963e+00 -2.42873993 RNVU1-14 -1.165963e+00
## GTCTCGTGTACATCCA -4.332121e+00 -4.60524475 RNVU1-14 -4.332121e+00
## GTATCTTAGACCCACC -3.171266e+00 6.10661192 FCER1A -3.171266e+00
## GAGCAGAAGAGCCTAG -1.889856e+00 6.77566688 FCER1A -1.889856e+00
## GTGCAGCTCACATAGC 5.977330e-01 2.11794566 RNVU1-14 5.977330e-01
## CCTATTAGTAAACCTC -2.864881e+00 -5.19432271 RNVU1-14 -2.864881e+00
## AGAGTGGAGTTTAGGA 1.209681e+00 -9.17804309 RNVU1-14 1.209681e+00
## TACGGGCAGGTGATTA 5.874006e+00 6.72907579 RNVU1-14 5.874006e+00
## ACTATCTCAATCTACG 1.472580e+00 6.53659187 RNVU1-14 1.472580e+00
## CGAGCCATCAGGCAAG 2.426180e+00 -7.45576833 RNVU1-14 2.426180e+00
## CGAATGTCAATTGCTG 6.564554e+00 -1.58694914 RNVU1-14 6.564554e+00
## TACGGTATCGTTACGA 2.557060e-01 2.41872600 RNVU1-14 2.557060e-01
## CTGTGCTCAAGGTGTG 6.065800e+00 1.51692437 RNVU1-14 6.065800e+00
## CCATGTCGTAACGACG -4.861762e+00 -4.61285178 RNVU1-14 -4.861762e+00
## TGCTGCTAGACACTAA 1.719350e+00 -5.88253455 RNVU1-14 1.719350e+00
## ACGGGTCTCGCTTAGA 8.131599e+00 2.80709852 RNVU1-14 8.131599e+00
## ACGAGGAAGGCTAGCA 3.444834e+00 1.77472927 RNVU1-14 3.444834e+00
## GCACTCTGTCGGCACT 3.690039e+00 5.22575486 RNVU1-14 3.690039e+00
## ATCATGGGTTTAAGCC 3.911044e+00 -6.49426793 RNVU1-14 3.911044e+00
## GCATGTAGTAAAGGAG 4.738446e+00 5.69774790 RNVU1-14 4.738446e+00
## CAACTAGAGTGGGCTA 1.496028e+00 -1.39212210 RNVU1-14 1.496028e+00
## AACACGTCAATCAGAA -8.670766e+00 6.66057665 FCER1A -8.670766e+00
## AAAGTAGGTGTCTGAT -9.300675e+00 6.61832477 FCER1A -9.300675e+00
## CTCATTATCGCTGATA 7.747000e+00 6.32235222 RNVU1-14 7.747000e+00
## TACTCGCCAACGCACC 2.896174e+00 5.87014251 RNVU1-14 2.896174e+00
## GGACATTGTCCTGCTT -7.910233e+00 5.18829695 FCER1A -7.910233e+00
## ACTGAACAGAGCTGGT -2.665102e-02 1.49894341 RNVU1-14 -2.665102e-02
## CTCGGGAAGTGCAAGC 8.650236e-01 -0.96140589 RNVU1-14 8.650236e-01
## AGCTCCTAGCATGGCA -5.652088e-01 -7.08463854 RNVU1-14 -5.652088e-01
## TATTACCGTCGACTGC 2.813359e+00 1.60991296 RNVU1-14 2.813359e+00
## GAACGGACATTTCACT 3.555423e+00 7.68055960 RNVU1-14 3.555423e+00
## CACAAACTCCCGGATG -3.685737e-01 -4.50206567 RNVU1-14 -3.685737e-01
## GCTCCTAAGGGAGTAA 4.114673e+00 3.32689089 RNVU1-14 4.114673e+00
## GACTAACCATCACGTA -8.977484e+00 5.97296458 FCER1A -8.977484e+00
## TACTCGCTCTTAACCT 4.185830e+00 6.64479053 RNVU1-14 4.185830e+00
## AGGCCGTCAGGAACGT -2.204399e+00 0.51695877 RNVU1-14 -2.204399e+00
## CCACTACAGTGCTGCC 3.342191e+00 -0.93090772 RNVU1-14 3.342191e+00
## ATCCACCCAAGCCGTC 7.761106e+00 -5.95121223 RNVU1-14 7.761106e+00
## GAGTCCGAGACTGTAA 3.264741e+00 3.44709883 RNVU1-14 3.264741e+00
## AAGCCGCCAGAAGCAC 4.757493e+00 -3.16282887 RNVU1-14 4.757493e+00
## GACACGCCAGATTGCT 6.573146e+00 -1.63140169 RNVU1-14 6.573146e+00
## CGACTTCAGGCTACGA 5.276949e+00 -7.47923376 RNVU1-14 5.276949e+00
## GGGTTGCCAGTAAGCG 5.181468e+00 3.92768967 RNVU1-14 5.181468e+00
## AGTGAGGGTCAGAATA -2.199857e-01 4.14113976 RNVU1-14 -2.199857e-01
## GATCTAGCAGCCACCA 2.955631e+00 -9.82737782 RNVU1-14 2.955631e+00
## ACGAGGACAAGACGTG 3.794809e+00 -1.09445161 RNVU1-14 3.794809e+00
## CATATGGCAAGCCGCT 2.243866e-01 -3.12559374 RNVU1-14 2.243866e-01
## TTATGCTCAGACGCTC -1.458651e+00 -7.41360423 RNVU1-14 -1.458651e+00
## AGTGTCAAGTCGCCGT 4.594438e+00 -3.53316367 RNVU1-14 4.594438e+00
## AAGGCAGGTCTGCCAG 3.771036e+00 4.74299989 RNVU1-14 3.771036e+00
## TCAGGATAGCCCGAAA 8.801190e+00 3.29020655 RNVU1-14 8.801190e+00
## CCACTACCACTAGTAC 5.587682e+00 -9.23213655 FCER1A 5.587682e+00
## AGCAGCCTCGCCAAAT 2.172374e+00 8.36989228 RNVU1-14 2.172374e+00
## CTGCCTATCCATGCTC 2.711108e+00 -0.31664211 RNVU1-14 2.711108e+00
## GCTGCAGCATAGTAAG -2.423937e-01 3.78247853 RNVU1-14 -2.423937e-01
## GCGCAGTTCAGTTCGA -3.281175e+00 4.41627051 FCER1A -3.281175e+00
## GGGCATCGTAGCGCTC 3.953198e+00 4.50317876 RNVU1-14 3.953198e+00
## CTAATGGGTTACGTCA 7.742022e+00 -2.58641670 RNVU1-14 7.742022e+00
## ATTCTACGTTATCGGT 9.639884e-01 -6.27692049 RNVU1-14 9.639884e-01
## GAAATGATCAGCTGGC 2.335541e+00 -5.50233211 RNVU1-14 2.335541e+00
## TGCTACCTCGTCCAGG 7.173994e-01 0.69917563 RNVU1-14 7.173994e-01
## ACATGGTCACTTACGA -2.593202e+00 7.61287539 RNVU1-14 -2.593202e+00
## ACTTTCAAGCGTTGCC 8.610835e+00 -3.49755962 RNVU1-14 8.610835e+00
## CCTACACGTAAACCTC 3.361248e+00 -1.81771097 RNVU1-14 3.361248e+00
## ATTGGTGAGATCCCAT 2.434441e+00 -0.19750949 RNVU1-14 2.434441e+00
## CCGGGATCACAGACAG -5.058401e+00 -3.06630110 RNVU1-14 -5.058401e+00
## CAGTAACTCTCTTGAT -1.567436e+00 -5.95114617 RNVU1-14 -1.567436e+00
## ATCTACTCAATAGCGG 9.544696e-01 -3.90651495 RNVU1-14 9.544696e-01
## ACCCACTGTTAAGAAC -7.424191e+00 4.82483508 FCER1A -7.424191e+00
## ACATACGTCTGCTTGC -1.387212e+00 -6.16631089 RNVU1-14 -1.387212e+00
## CGTCTACGTTGAACTC 1.499977e+00 2.82186087 RNVU1-14 1.499977e+00
## ATTATCCCAGCAGTTT 6.597516e-01 4.52982408 RNVU1-14 6.597516e-01
## GAAACTCTCGTTACGA 7.170608e-01 -2.25962565 RNVU1-14 7.170608e-01
## GATGAAACATCATCCC 6.536961e+00 3.37784845 RNVU1-14 6.536961e+00
## CACAGTATCTGTCCGT 5.044328e+00 -1.05686075 RNVU1-14 5.044328e+00
## TGAAAGAAGGAGCGAG 8.378323e+00 0.15021670 RNVU1-14 8.378323e+00
## CCGGTAGAGACCGGAT 6.098751e+00 2.59708784 RNVU1-14 6.098751e+00
## TGCGGGTTCTAACCGA -8.542563e+00 4.19464935 FCER1A -8.542563e+00
## GGCGACTTCGCGCCAA -8.112348e-01 -1.07821877 RNVU1-14 -8.112348e-01
## GGGATGAAGTCGCCGT 4.339055e+00 -6.41080183 RNVU1-14 4.339055e+00
## GATTCAGGTACAGACG 1.086021e-01 -0.79382160 RNVU1-14 1.086021e-01
## TAGACCACAAGAAGAG 6.469297e-01 -4.84616542 RNVU1-14 6.469297e-01
## AATCCAGGTCAGAGGT -6.299324e+00 2.04616857 FCER1A -6.299324e+00
## TGAGCCGCAATGGACG -4.533750e+00 -2.82498997 RNVU1-14 -4.533750e+00
## CACATAGGTACTCTCC -1.630605e+00 -0.25945645 RNVU1-14 -1.630605e+00
## CATGGCGAGCAATATG -8.896476e+00 6.80217814 FCER1A -8.896476e+00
## CAGTAACGTTATTCTC -3.248291e+00 5.73738875 FCER1A -3.248291e+00
## GCGAGAAGTTCCGTCT 2.301985e+00 -8.72120370 RNVU1-14 2.301985e+00
## TTTACTGGTCCCTTGT -7.170291e+00 -2.26381632 FCER1A -7.170291e+00
## ATCATGGCACGAAATA 3.911615e+00 -1.45908464 RNVU1-14 3.911615e+00
## CGCCAAGAGGCAGTCA -1.049559e+00 -5.65424376 RNVU1-14 -1.049559e+00
## CGTCCATGTCCAGTAT -9.065749e-01 -12.14631589 RNVU1-14 -9.065749e-01
## TGGCGCATCCATTCTA 1.082823e+00 -5.83746787 RNVU1-14 1.082823e+00
## CCCATACGTAGCTTGT -1.274327e+00 -4.23696194 RNVU1-14 -1.274327e+00
## GCATGCGGTGCTGTAT -1.105904e+00 -2.30929762 RNVU1-14 -1.105904e+00
## TTCTTAGCATGCTAGT 4.518414e+00 -10.98999135 RNVU1-14 4.518414e+00
## TGCGCAGAGTGGACGT -4.740021e+00 2.27632786 FCER1A -4.740021e+00
## ATTATCCGTTGCTCCT 1.019460e+01 1.60068503 RNVU1-14 1.019460e+01
## AGAATAGAGACTAGGC 2.574607e-01 8.19470211 RNVU1-14 2.574607e-01
## CCTACACAGCTGCAAG -4.579187e+00 3.78036762 FCER1A -4.579187e+00
## GACAGAGAGTGCTGCC 2.674800e+00 7.80813469 RNVU1-14 2.674800e+00
## GTTCGGGTCCCAAGAT 5.078476e+00 5.85749790 RNVU1-14 5.078476e+00
## AGTAGTCGTAAGCACG -4.204170e+00 -7.66123928 RNVU1-14 -4.204170e+00
## CTCACACGTACCTACA -3.218777e+00 -7.27508623 RNVU1-14 -3.218777e+00
## GCAGTTAAGTGGGTTG 1.666565e+00 -0.71374206 RNVU1-14 1.666565e+00
## GTCAAGTCAGCTCGAC -9.307978e-02 4.66083424 FCER1A -9.307978e-02
## GCTGCGATCCCTAACC -7.367523e+00 -2.18373837 FCER1A -7.367523e+00
## GATCGTATCCCTAACC -5.129086e-01 -10.37214175 RNVU1-14 -5.129086e-01
## TGAGAGGTCCGTAGTA -3.068281e+00 -3.50342754 RNVU1-14 -3.068281e+00
## CTCGTCAGTGCACTTA -1.869924e+00 -1.73791864 RNVU1-14 -1.869924e+00
## AGCATACAGCAAATCA 2.038829e+00 1.50302028 RNVU1-14 2.038829e+00
## TCGGGACGTGTCAATC 1.893738e+00 0.79349361 RNVU1-14 1.893738e+00
## ATGCGATGTAAACACA 8.023736e+00 -7.23045009 RNVU1-14 8.023736e+00
## CATGACACACAACGTT 5.681009e+00 2.02909006 RNVU1-14 5.681009e+00
## GCTTGAAGTGCTAGCC 3.164570e+00 -8.10136604 RNVU1-14 3.164570e+00
## TTTGGTTTCTCTTATG 6.542839e+00 -2.60279866 RNVU1-14 6.542839e+00
## ACACCCTGTGAAATCA 6.644580e+00 4.13445131 RNVU1-14 6.644580e+00
## ATCATGGTCCCTCAGT -5.518678e+00 -5.00020672 RNVU1-14 -5.518678e+00
## CCTCTGACAATCAGAA 4.913926e+00 -4.21936812 RNVU1-14 4.913926e+00
## ACATACGAGACACTAA 6.863066e-01 8.37578804 RNVU1-14 6.863066e-01
## TCACAAGTCCGTAGGC -7.494170e+00 1.55313421 FCER1A -7.494170e+00
## GCAGTTAGTCCAGTGC -8.718299e+00 0.25433822 FCER1A -8.718299e+00
## AGTGAGGGTTACAGAA 9.690106e+00 4.93468788 RNVU1-14 9.690106e+00
## CACACAAGTAATCACC 4.260916e-01 -9.85862531 RNVU1-14 4.260916e-01
## GATCGCGAGGCTAGAC -4.562177e+00 -4.19709412 RNVU1-14 -4.562177e+00
## CTCGTACTCCTTTCGG 1.916499e+00 -1.03062040 RNVU1-14 1.916499e+00
## ATCCACCTCGGCGGTT 5.593286e+00 9.23465138 RNVU1-14 5.593286e+00
## GAAGCAGAGCTAGTTC 8.548682e+00 -2.52295127 RNVU1-14 8.548682e+00
## CAGTCCTAGTGTCTCA 4.405758e+00 2.29180444 RNVU1-14 4.405758e+00
## CGCTTCACAATGGATA 2.354838e+00 -5.76518775 RNVU1-14 2.354838e+00
## TCCCGATTCATATCGG 4.848905e+00 -2.95373630 RNVU1-14 4.848905e+00
## TGTGGTACATATACCG 3.850445e+00 6.02642958 RNVU1-14 3.850445e+00
## TACCTTACACTACAGT -7.650567e+00 2.79350107 FCER1A -7.650567e+00
## GTAGGCCGTCCGTCAG -5.136115e+00 -7.66884750 RNVU1-14 -5.136115e+00
## CAGAATCCAATCAGAA 1.161542e+00 5.89630599 RNVU1-14 1.161542e+00
## GGATTACTCTGTGCAA -7.848723e-01 8.08541832 FCER1A -7.848723e-01
## GTCGTAAGTTTGTTTC -2.150638e+00 9.16075689 RNVU1-14 -2.150638e+00
## GATCGTAAGCCAGTAG 4.521357e+00 -4.09050881 RNVU1-14 4.521357e+00
## GACTACAGTTAAAGAC 9.046054e+00 -5.62714169 RNVU1-14 9.046054e+00
## CATGACACAACACCTA 9.638608e+00 -2.21053324 RNVU1-14 9.638608e+00
## CACCAGGTCACGCGGT -8.503426e-01 -12.63334048 RNVU1-14 -8.503426e-01
## GTCTTCGTCTGAGTGT -1.637446e+00 3.38244355 FCER1A -1.637446e+00
## CCTTCGAAGTGGGATC -5.864636e-01 -5.18497688 RNVU1-14 -5.864636e-01
## GTGCGGTGTCCTGCTT -8.092565e-01 -10.46623537 RNVU1-14 -8.092565e-01
## GTCACAACATGCCTTC -8.945527e+00 0.21219912 FCER1A -8.945527e+00
## CAGAGAGTCAGTCAGT 1.882167e+00 -8.03577464 RNVU1-14 1.882167e+00
## GTGCGGTGTACTCTCC -1.594496e+00 0.59424017 RNVU1-14 -1.594496e+00
## CAGCTAATCAAGATCC -3.467392e+00 2.54671915 FCER1A -3.467392e+00
## CAAGATCGTTGGGACA 6.727197e+00 -7.81771923 RNVU1-14 6.727197e+00
## TTTATGCCATCACAAC 8.119497e+00 4.99454347 RNVU1-14 8.119497e+00
## CGGTTAATCCCAAGTA 4.719813e+00 0.59786472 RNVU1-14 4.719813e+00
## TAGCCGGTCCGTAGTA -1.057834e+01 4.01096450 FCER1A -1.057834e+01
## ACGAGCCGTGTTTGTG 1.527536e+00 6.21024586 RNVU1-14 1.527536e+00
## AGCATACCAAACCCAT -2.128794e+00 10.23627590 RNVU1-14 -2.128794e+00
## GAAATGATCAACACTG 1.815332e+00 1.47737360 RNVU1-14 1.815332e+00
## TATCTCACATAACCTG 7.864979e+00 0.95320144 RNVU1-14 7.864979e+00
## CCGTACTCACTTCTGC -1.099125e+01 3.55343253 FCER1A -1.099125e+01
## CTAGAGTTCAGAGGTG -2.306152e+00 -2.89765320 RNVU1-14 -2.306152e+00
## CTGATAGCATACAGCT 3.543732e+00 -5.15230097 RNVU1-14 3.543732e+00
## TCGAGGCCACGGTAGA -7.359257e+00 6.80325879 FCER1A -7.359257e+00
## GATCAGTTCACTTATC -2.132532e+00 -4.12827976 RNVU1-14 -2.132532e+00
## GTTTCTAAGCCCTAAT -1.683131e+00 -9.40520559 RNVU1-14 -1.683131e+00
## CAGCTGGAGGAATTAC -6.002086e+00 0.86911471 FCER1A -6.002086e+00
## AGAGTGGTCGATCCCT 8.532731e-01 -9.90547100 RNVU1-14 8.532731e-01
## CATGGCGCAACTGCTA 2.487109e-01 -3.40613878 RNVU1-14 2.487109e-01
## CTGGTCTGTATATGGA -8.675774e+00 4.52674174 FCER1A -8.675774e+00
## CGTCACTCACAGGAGT 1.885011e+00 -2.60302610 RNVU1-14 1.885011e+00
## AACTGGTTCAACCAAC -9.370409e+00 5.35380332 FCER1A -9.370409e+00
## CCATTCGCAGGGAGAG -8.842309e-01 0.52838436 RNVU1-14 -8.842309e-01
## CATCAGATCTTCAACT -4.073099e+00 -1.89936601 RNVU1-14 -4.073099e+00
## GAATGAATCAGGCAAG 1.415408e+00 -4.64746711 RNVU1-14 1.415408e+00
## TGTCCCATCGAATGCT -1.416379e+00 1.20136027 RNVU1-14 -1.416379e+00
## AGTGGGACAGCCAATT 1.334275e+00 -1.67811345 RNVU1-14 1.334275e+00
## AGAGCTTTCACATGCA 6.969329e+00 -4.36323009 RNVU1-14 6.969329e+00
## TGCGGGTTCTGCAGTA 7.199681e+00 -4.99074850 RNVU1-14 7.199681e+00
## GTCGTAAGTCGGCACT 5.213620e+00 -7.54120103 RNVU1-14 5.213620e+00
## CTCGAGGTCGGAGCAA -1.535957e+00 -0.55751139 RNVU1-14 -1.535957e+00
## CTACACCAGATGAGAG -8.532659e+00 -1.13772535 RNVU1-14 -8.532659e+00
## ACGGCCATCTTACCTA 4.122792e+00 -0.69767734 RNVU1-14 4.122792e+00
## CCCAGTTCACACCGAC 3.324179e+00 -10.88652323 FCER1A 3.324179e+00
## TCGGGACTCGGATGGA -5.395824e+00 1.82109018 FCER1A -5.395824e+00
## CATCGGGTCCCGACTT -3.868171e+00 0.94192704 FCER1A -3.868171e+00
## CTTAACTGTAAGGATT 6.268201e+00 6.53823839 RNVU1-14 6.268201e+00
## AACCATGAGCGTAATA 6.636750e+00 -0.11980178 RNVU1-14 6.636750e+00
## TCAGATGGTCTTCTCG 3.658707e-01 -7.47340137 RNVU1-14 3.658707e-01
## CTCACACTCCCAACGG -2.236868e+00 10.66971754 RNVU1-14 -2.236868e+00
## CCATGTCAGGATGGAA -8.761853e-01 -1.77491162 RNVU1-14 -8.761853e-01
## GGGTCTGGTACTTGAC 7.585292e+00 -2.08513676 RNVU1-14 7.585292e+00
## GGAACTTCACAGTCGC 2.743753e+00 -9.54205886 RNVU1-14 2.743753e+00
## GACCTGGCACATCCAA 5.736315e+00 4.49306281 RNVU1-14 5.736315e+00
## CAGTCCTCAAGACACG -8.236154e+00 7.68925514 FCER1A -8.236154e+00
## AGATCTGCATATGGTC 3.379516e+00 -5.83544768 RNVU1-14 3.379516e+00
## CATCAGAGTATTCTCT 1.946420e+00 -3.52228141 RNVU1-14 1.946420e+00
## TGCACCTTCGATAGAA -1.028930e+00 -10.37898033 RNVU1-14 -1.028930e+00
## CCTACACTCCCAAGTA 5.781861e+00 -4.44594705 RNVU1-14 5.781861e+00
## ACTTTCATCGTAGATC -8.388015e+00 5.10639949 FCER1A -8.388015e+00
## TTGCGTCCACCATGTA -2.117388e-01 6.96255417 RNVU1-14 -2.117388e-01
## AAATGCCAGGTGCTAG 5.683804e+00 9.63927708 RNVU1-14 5.683804e+00
## ATGCGATGTCCATCCT -4.718003e+00 4.08013484 FCER1A -4.718003e+00
## CCAGCGAAGCCACTAT 6.664703e+00 -1.59871243 RNVU1-14 6.664703e+00
## TACTTGTAGTGTACTC 3.182150e+00 5.13650489 RNVU1-14 3.182150e+00
## AGGGATGTCTCGCTTG -2.855192e+00 3.06418591 FCER1A -2.855192e+00
## TGTCCCAGTATTAGCC 5.163745e+00 -9.31851269 RNVU1-14 5.163745e+00
## TGCTACCTCGCACTCT -6.830137e+00 0.52454619 RNVU1-14 -6.830137e+00
## GTAACGTCAGTATAAG -1.061979e+01 3.21165533 FCER1A -1.061979e+01
## GCGCAACGTTCGTTGA -7.511986e+00 3.38075416 FCER1A -7.511986e+00
## GCGAGAACATGAGCGA -1.055116e+01 5.87375864 FCER1A -1.055116e+01
## TGCCCTAGTGCACCAC -7.779413e+00 -0.42046420 FCER1A -7.779413e+00
## CTAGAGTGTAAACACA -1.137294e+00 2.07444697 RNVU1-14 -1.137294e+00
## AGTAGTCCACCGGAAA 1.920283e+00 3.98464886 RNVU1-14 1.920283e+00
## CATATTCTCAGCGATT 4.459245e+00 0.35512934 RNVU1-14 4.459245e+00
## GAATGAAGTAACGACG 5.748431e+00 1.31015961 RNVU1-14 5.748431e+00
## GATCAGTAGTACTTGC 6.831021e+00 -3.75167056 RNVU1-14 6.831021e+00
## CAAGAAACAGGATTGG -4.725736e+00 3.83764871 FCER1A -4.725736e+00
## CCTATTATCAACACTG -2.448638e+00 -5.68727759 RNVU1-14 -2.448638e+00
## CAGCAGCTCTGCGGCA -5.855051e+00 -2.67097026 RNVU1-14 -5.855051e+00
## ATAAGAGAGCTGCGAA 7.939433e+00 2.81866772 RNVU1-14 7.939433e+00
## AGATCTGCACCTATCC 7.902560e-01 -10.53155833 RNVU1-14 7.902560e-01
## GACACGCGTAGAGCTG -4.289512e+00 -6.28180753 RNVU1-14 -4.289512e+00
## TACACGAAGCTAGGCA -1.708622e+00 0.26584942 RNVU1-14 -1.708622e+00
## AACACGTTCCGAAGAG 1.372862e+00 -4.29921878 RNVU1-14 1.372862e+00
## TTAACTCGTGTAATGA -8.131753e+00 7.87178795 FCER1A -8.131753e+00
## TGGCGCAGTTCAGACT 3.440412e+00 1.05951864 RNVU1-14 3.440412e+00
## CATCAGAGTCTAGTCA -1.794150e+00 5.54726428 FCER1A -1.794150e+00
## CTAGAGTAGCATGGCA 5.615897e+00 6.74860631 RNVU1-14 5.615897e+00
## TACGGTAAGCGTGAAC 5.904719e+00 4.34339294 RNVU1-14 5.904719e+00
## TGACTTTTCGGATGTT -6.298207e+00 3.39041386 FCER1A -6.298207e+00
## CTCACACTCCTACAGA -4.976099e+00 -8.66432922 RNVU1-14 -4.976099e+00
## CCGTACTCACTGAAGG 5.639067e+00 -5.92724179 RNVU1-14 5.639067e+00
## ATAACGCGTGGAAAGA -1.204078e+00 -4.89083534 RNVU1-14 -1.204078e+00
## GCTTGAAAGCTAGGCA -5.859117e+00 6.75708117 FCER1A -5.859117e+00
## AAGTCTGGTGTTGGGA 5.248984e+00 -6.11249735 RNVU1-14 5.248984e+00
## CGATCGGGTACAGCAG 1.280231e+00 3.20085234 RNVU1-14 1.280231e+00
## AGTAGTCTCGATGAGG 3.546329e+00 2.51762719 RNVU1-14 3.546329e+00
## CGACCTTCAGACGCTC -7.387409e+00 4.50772268 FCER1A -7.387409e+00
## GCATACACATGCAACT 4.223245e+00 1.53875690 RNVU1-14 4.223245e+00
## TCCCGATTCGCAGGCT 4.113075e+00 8.66711686 RNVU1-14 4.113075e+00
## TTAGGCAAGATCGATA -7.279612e+00 5.77674193 FCER1A -7.279612e+00
## TCGTACCAGGCAAAGA 2.142047e+00 -7.62956725 RNVU1-14 2.142047e+00
## GGATGTTGTATAGGGC 4.427690e+00 4.41660737 RNVU1-14 4.427690e+00
## AATCCAGCAGAGTGTG 3.610174e+00 -4.31960620 RNVU1-14 3.610174e+00
## CATGCCTCACGGCCAT -4.504154e+00 4.85747142 FCER1A -4.504154e+00
## CTCGAAACACATGACT 4.477078e+00 -0.07689102 RNVU1-14 4.477078e+00
## CTGCCTAGTTGCGTTA -3.511288e-01 -4.57535706 RNVU1-14 -3.511288e-01
## GGCGACTAGACAGAGA -8.618505e+00 0.16510837 FCER1A -8.618505e+00
## TACAGTGGTGTAATGA -5.612653e+00 5.76301057 FCER1A -5.612653e+00
## ACGAGCCTCTTATCTG 9.873352e+00 5.07518514 RNVU1-14 9.873352e+00
## GGGAATGCAAATACAG -9.394105e+00 6.71830037 FCER1A -9.394105e+00
## TGCACCTGTACCGAGA 5.148232e+00 -6.22147826 RNVU1-14 5.148232e+00
## ATCATCTTCAGTCAGT 1.057280e+01 -0.16951143 RNVU1-14 1.057280e+01
## CATATTCGTACAGTTC -8.839006e-01 -1.90872262 RNVU1-14 -8.839006e-01
## GCATGATGTTCCACTC -2.044203e+00 -0.14753598 RNVU1-14 -2.044203e+00
## AAGGCAGTCACGACTA -4.332109e+00 0.26554382 RNVU1-14 -4.332109e+00
## GAAACTCTCTATCCCG -2.170408e+00 -1.44928431 RNVU1-14 -2.170408e+00
## AGCATACTCTGCTGTC -4.235250e+00 3.18573562 FCER1A -4.235250e+00
## TGGGCGTCAGCGTTCG -4.861304e+00 1.23644683 FCER1A -4.861304e+00
## TCGTAGAGTTCGTCTC -5.829069e+00 -4.81356261 RNVU1-14 -5.829069e+00
## GACAGAGGTACCGCTG -1.004446e+01 4.00260346 FCER1A -1.004446e+01
## TCTCATACACATAACC -1.552873e+00 -6.72790597 RNVU1-14 -1.552873e+00
## TGGGCGTCATTGAGCT 1.491094e+00 -9.73154313 RNVU1-14 1.491094e+00
## CATGACACATGTCTCC 7.862207e-01 -6.98352499 RNVU1-14 7.862207e-01
## GAATAAGGTGCACGAA -4.015221e+00 7.96834932 FCER1A -4.015221e+00
## TGCGCAGCAAGCGAGT -4.738201e-01 -2.23807869 RNVU1-14 -4.738201e-01
## CTTCTCTCAGCCAGAA 6.522834e-01 -0.28475056 RNVU1-14 6.522834e-01
## AAGCCGCAGTGGCACA 5.381163e-01 -1.19173322 RNVU1-14 5.381163e-01
## CTCTACGAGTGGACGT 5.418260e+00 -9.95085912 RNVU1-14 5.418260e+00
## GTCATTTTCTATCCCG 6.020399e+00 7.31827049 RNVU1-14 6.020399e+00
## CGAGCACAGCCACTAT -9.532625e+00 -0.37672640 FCER1A -9.532625e+00
## AGTAGTCGTAACGACG -4.960707e+00 -4.80736220 RNVU1-14 -4.960707e+00
## GACGTGCAGAGGGATA -8.659590e-01 3.00008337 RNVU1-14 -8.659590e-01
## GTCTTCGTCCAACCAA 8.078407e+00 4.35234047 RNVU1-14 8.078407e+00
## CAAGGCCTCGCCCTTA -1.650036e+00 -4.10777888 RNVU1-14 -1.650036e+00
## TGTGGTACATGGTTGT 4.333766e+00 5.97931693 RNVU1-14 4.333766e+00
## CCTCAGTTCGAATGCT -6.298901e+00 3.10075920 FCER1A -6.298901e+00
## ACCGTAATCTGAGGGA -4.851655e+00 4.67346558 FCER1A -4.851655e+00
## GTTAAGCCAGTTCATG 3.330227e+00 -5.74955731 RNVU1-14 3.330227e+00
## CTGCCTATCAATCTCT -1.781482e+00 1.58814641 RNVU1-14 -1.781482e+00
## GACGGCTTCTCCAACC 1.974222e+00 -0.61419188 RNVU1-14 1.974222e+00
## TTTCCTCCAGTTCCCT -8.956004e-01 -12.34614791 RNVU1-14 -8.956004e-01
## GCGCCAAAGCCCTAAT -9.713814e-01 -1.29271016 RNVU1-14 -9.713814e-01
## CCACCTATCCCGACTT -2.462155e+00 4.05638367 FCER1A -2.462155e+00
## TTTATGCCAGGGCATA 4.095397e+00 -10.93641161 FCER1A 4.095397e+00
## TACAGTGTCGCGGATC -4.287943e+00 1.27509811 FCER1A -4.287943e+00
## AGCTCTCCACCACGTG 1.028960e+00 -3.34557017 RNVU1-14 1.028960e+00
## GTGGGTCCATTGAGCT 7.492028e-03 10.47053957 FCER1A 7.492028e-03
## GGGATGACAGACTCGC 8.605070e+00 -3.65092807 RNVU1-14 8.605070e+00
## ACACCAAGTTCGGGCT -7.993369e+00 5.14879219 FCER1A -7.993369e+00
## TGATTTCAGCTATGCT -9.880691e+00 1.23120054 FCER1A -9.880691e+00
## TGGCCAGAGAGGGCTT 5.145418e+00 4.47840018 RNVU1-14 5.145418e+00
## TCGGTAAGTAAAGTCA 3.494028e+00 7.48264607 RNVU1-14 3.494028e+00
## TGAAAGAGTCCCTTGT -5.314825e+00 5.75532917 FCER1A -5.314825e+00
## CCGTGGATCGTTTATC -5.444200e+00 0.42559319 FCER1A -5.444200e+00
## GAACCTATCCTCAACC -4.169842e+00 -5.69093177 RNVU1-14 -4.169842e+00
## GCGCAGTCATCCAACA -8.963229e+00 3.37677607 FCER1A -8.963229e+00
## ACATGGTTCGCGCCAA -2.653004e+00 3.75391014 FCER1A -2.653004e+00
## CTTGGCTGTACGCACC -1.284867e+00 -8.30851167 RNVU1-14 -1.284867e+00
## AGATTGCAGGCCCGTT -4.800783e+00 -8.83620605 RNVU1-14 -4.800783e+00
## AGGCCGTGTTACGGAG -8.124113e+00 5.75832235 FCER1A -8.124113e+00
## GGTGTTAGTTAAGATG 2.140839e+00 -2.00817489 RNVU1-14 2.140839e+00
## GGAATAATCCTGTAGA -5.574210e+00 4.13971276 FCER1A -5.574210e+00
## TATTACCGTATTAGCC -9.308046e+00 1.17733605 FCER1A -9.308046e+00
## ATAACGCGTTAGTGGG -3.988616e+00 -3.50692765 RNVU1-14 -3.988616e+00
## AAACGGGGTTATCCGA -3.579510e+00 1.64545336 RNVU1-14 -3.579510e+00
## TGTGGTATCGTTTAGG -6.913373e+00 3.87820458 FCER1A -6.913373e+00
## ATCACGAGTATGAATG -2.439721e+00 3.41487553 FCER1A -2.439721e+00
## CAGCAGCTCACCTCGT -6.141276e-01 -10.44154398 RNVU1-14 -6.141276e-01
## CCAATCCGTATTACCG -5.904125e+00 5.00515791 FCER1A -5.904125e+00
## TTCTACATCACATAGC 6.112852e+00 6.55028648 RNVU1-14 6.112852e+00
## TGTCCCATCGTATCAG 8.800517e+00 -3.51706822 RNVU1-14 8.800517e+00
## AGCTCTCAGTGTTTGC -1.325945e+00 -3.44325153 RNVU1-14 -1.325945e+00
## CAACCTCAGTAACCCT 7.877974e+00 6.43545138 RNVU1-14 7.877974e+00
## GTGGGTCAGGTAAACT -3.630388e+00 -0.64842123 RNVU1-14 -3.630388e+00
## TAAGTGCCACGTCAGC -5.644045e+00 7.28087341 FCER1A -5.644045e+00
## GACCTGGCAGCCACCA 4.301284e+00 -8.71281307 RNVU1-14 4.301284e+00
## ACAGCCGCAGGATCGA 1.029330e+00 -6.90833618 RNVU1-14 1.029330e+00
## AACTCCCCAGCTCGCA 4.247216e+00 -3.48441558 RNVU1-14 4.247216e+00
## GGAAAGCGTCTCTCGT 3.510818e+00 0.23251375 RNVU1-14 3.510818e+00
## CGCTTCAAGCAGGTCA -4.914605e+00 1.46609183 FCER1A -4.914605e+00
## GATCGCGAGAAGGGTA -6.413629e+00 4.14813503 FCER1A -6.413629e+00
## AAGCCGCCAGGATTGG -1.051683e+01 2.88993836 FCER1A -1.051683e+01
## ATTGGACGTCGTGGCT 3.329373e+00 4.28667964 RNVU1-14 3.329373e+00
## CCCATACCACTAAGTC 7.907591e+00 7.07868143 RNVU1-14 7.907591e+00
## TCTCTAATCCCATTTA -1.048328e+01 5.66378840 FCER1A -1.048328e+01
## TCGTAGAGTGGTACAG -5.836787e+00 -2.69605685 FCER1A -5.836787e+00
## AAACGGGAGAGACGAA 9.998998e-01 -2.25437695 RNVU1-14 9.998998e-01
## GACTACATCACCACCT 5.440028e+00 9.01486282 RNVU1-14 5.440028e+00
## GAAACTCAGTTGAGTA -1.566576e+00 -4.50723060 RNVU1-14 -1.566576e+00
## CCCTCCTTCCTCCTAG -9.636273e+00 1.29110803 FCER1A -9.636273e+00
## GCGACCATCACGGTTA 1.531680e-02 5.39959967 RNVU1-14 1.531680e-02
## TCTCTAAAGAGTCGGT -5.121621e+00 3.61876677 FCER1A -5.121621e+00
## GGCTCGATCTCACATT 6.662753e+00 -0.06355014 RNVU1-14 6.662753e+00
## CTGATAGAGGCAGGTT -3.275426e+00 6.18298026 FCER1A -3.275426e+00
## CATGCCTAGGAGTTTA -7.325889e+00 2.49315506 FCER1A -7.325889e+00
## TGGCTGGTCAGCCTAA 4.277762e+00 -4.58668200 RNVU1-14 4.277762e+00
## TCAGATGTCGTTACAG 6.788437e+00 -7.74072556 RNVU1-14 6.788437e+00
## CAGCTGGGTTATGTGC -1.377998e+00 -2.77598063 RNVU1-14 -1.377998e+00
## GGAACTTAGTCGTACT 1.345522e+00 -7.65630497 RNVU1-14 1.345522e+00
## CCGGGATCACCGGAAA -6.241643e+00 4.79185561 FCER1A -6.241643e+00
## CCTTCGATCAAAGACA 6.271899e-01 -5.16949311 RNVU1-14 6.271899e-01
## CGAGAAGGTATCGCAT -2.545856e+00 1.23219604 FCER1A -2.545856e+00
## CCTAAAGAGACTGGGT 1.613359e+00 -8.39922297 RNVU1-14 1.613359e+00
## CAGATCACATTGGCGC -6.193854e+00 4.88584554 FCER1A -6.193854e+00
## CTAGCCTAGCTGGAAC -1.673475e+00 5.83014130 FCER1A -1.673475e+00
## ATTGGTGTCTCGTATT 7.618206e+00 6.26252206 RNVU1-14 7.618206e+00
## GGGAATGTCAAAGTAG -5.763744e+00 2.12691943 FCER1A -5.763744e+00
## CCATGTCCACGGCCAT -5.515122e+00 -6.39443455 RNVU1-14 -5.515122e+00
## GGCAATTCATATGGTC 1.203202e+00 -4.46128743 RNVU1-14 1.203202e+00
## CTGTGCTCATGTCCTC -3.119671e+00 2.10428535 RNVU1-14 -3.119671e+00
## TTAACTCCAACGCACC -2.089245e+00 1.95839630 RNVU1-14 -2.089245e+00
## CGAACATAGCGGCTTC 2.669011e+00 -5.94601457 RNVU1-14 2.669011e+00
## TCGCGTTAGGCACATG -6.214042e+00 4.00673550 FCER1A -6.214042e+00
## GGGTTGCCAAACTGCT -2.283807e+00 4.09198288 RNVU1-14 -2.283807e+00
## ATAAGAGCAGGTGCCT -5.758653e+00 0.55407994 FCER1A -5.758653e+00
## CGGACACGTATTCGTG 7.420237e+00 4.91444266 RNVU1-14 7.420237e+00
## CTGATAGTCACGACTA -1.590383e+00 -8.04744340 RNVU1-14 -1.590383e+00
## GAACATCGTGAGTATA 5.053656e+00 2.55620440 RNVU1-14 5.053656e+00
## TGCTACCAGTGGTCCC 3.986098e+00 1.52336714 RNVU1-14 3.986098e+00
## GCTGGGTAGTCTTGCA -2.628358e+00 -6.99109831 RNVU1-14 -2.628358e+00
## TACGGATGTCTAACGT 2.227207e+00 3.20282438 RNVU1-14 2.227207e+00
## TGGGCGTCAATGGATA -7.339674e+00 1.21547427 FCER1A -7.339674e+00
## CTGCTGTCATTTGCTT 6.421546e+00 1.81413427 RNVU1-14 6.421546e+00
## GGGCATCAGCAGCCTC -8.370552e+00 4.42006712 FCER1A -8.370552e+00
## CGTGAGCAGACTAGAT 1.732701e+00 -8.24611111 RNVU1-14 1.732701e+00
## CAGCGACCACACCGAC 5.095460e+00 6.69669295 RNVU1-14 5.095460e+00
## CCCAATCCAGTTAACC 6.760060e+00 6.46831432 RNVU1-14 6.760060e+00
## CAGCGACTCAGCGACC 1.377572e+00 0.74564999 RNVU1-14 1.377572e+00
## GAGCAGAAGCTATGCT 5.996503e+00 5.40775242 RNVU1-14 5.996503e+00
## CTCTGGTTCACTTCAT -6.633507e-01 0.97420778 RNVU1-14 -6.633507e-01
## CGCGTTTCAGCTGTGC -7.789296e+00 2.72469496 FCER1A -7.789296e+00
## GGACGTCCACCTCGGA 6.804610e+00 -3.36186641 RNVU1-14 6.804610e+00
## TAGTTGGAGAGTTGGC 3.246687e+00 -1.20152036 RNVU1-14 3.246687e+00
## ATTGGTGTCGGAATCT -3.666721e+00 0.53841459 RNVU1-14 -3.666721e+00
## GAATGAACACGGCCAT 7.946070e+00 4.70701237 RNVU1-14 7.946070e+00
## GTGCATACAAGGTGTG 2.006366e+00 -3.57461214 RNVU1-14 2.006366e+00
## GGAATAAGTCGGCACT 2.471427e+00 -4.38734743 RNVU1-14 2.471427e+00
## ACCCACTTCCAAAGTC 8.661584e+00 -4.50665306 RNVU1-14 8.661584e+00
## ACTATCTCAATTCCTT -4.769779e+00 7.01717630 FCER1A -4.769779e+00
## AGCATACAGTGGGATC -4.206730e+00 2.49401762 RNVU1-14 -4.206730e+00
## y pt.size
## GTCATTTTCCGCATCT 0.22898545 0.5
## ATAAGAGAGGAGTTGC 2.76507088 0.5
## CATTATCCATGGTCTA 2.26353705 0.5
## CTTAGGAGTGGCGAAT -1.46785659 0.5
## CATCAGAAGCACCGCT 4.81762700 0.5
## GCGGGTTAGTAGCCGA 3.34423767 0.5
## CAGAGAGAGCGCCTTG -0.07468406 0.5
## CTGAAGTCAGACACTT 2.11618901 0.5
## GGACGTCCAGGTGCCT 6.70733341 0.5
## AAAGCAAGTGGTGTAG 0.42397557 0.5
## TCTCATACAGGGCATA -3.24906447 0.5
## AACTCAGGTACTCGCG 3.11792498 0.5
## CACATTTGTGAGTATA 3.84801123 0.5
## ACTTTCAAGGTGTTAA 1.72482926 0.5
## TGCCCATCAGACGCAA 7.60624163 0.5
## CTAAGACCAATGCCAT -0.51975752 0.5
## CGGAGCTCATTTGCTT -5.11813943 0.5
## GAGCAGATCGACGGAA 2.60195317 0.5
## TAAACCGAGATCGATA -2.42873993 0.5
## GTCTCGTGTACATCCA -4.60524475 0.5
## GTATCTTAGACCCACC 6.10661192 0.5
## GAGCAGAAGAGCCTAG 6.77566688 0.5
## GTGCAGCTCACATAGC 2.11794566 0.5
## CCTATTAGTAAACCTC -5.19432271 0.5
## AGAGTGGAGTTTAGGA -9.17804309 0.5
## TACGGGCAGGTGATTA 6.72907579 0.5
## ACTATCTCAATCTACG 6.53659187 0.5
## CGAGCCATCAGGCAAG -7.45576833 0.5
## CGAATGTCAATTGCTG -1.58694914 0.5
## TACGGTATCGTTACGA 2.41872600 0.5
## CTGTGCTCAAGGTGTG 1.51692437 0.5
## CCATGTCGTAACGACG -4.61285178 0.5
## TGCTGCTAGACACTAA -5.88253455 0.5
## ACGGGTCTCGCTTAGA 2.80709852 0.5
## ACGAGGAAGGCTAGCA 1.77472927 0.5
## GCACTCTGTCGGCACT 5.22575486 0.5
## ATCATGGGTTTAAGCC -6.49426793 0.5
## GCATGTAGTAAAGGAG 5.69774790 0.5
## CAACTAGAGTGGGCTA -1.39212210 0.5
## AACACGTCAATCAGAA 6.66057665 0.5
## AAAGTAGGTGTCTGAT 6.61832477 0.5
## CTCATTATCGCTGATA 6.32235222 0.5
## TACTCGCCAACGCACC 5.87014251 0.5
## GGACATTGTCCTGCTT 5.18829695 0.5
## ACTGAACAGAGCTGGT 1.49894341 0.5
## CTCGGGAAGTGCAAGC -0.96140589 0.5
## AGCTCCTAGCATGGCA -7.08463854 0.5
## TATTACCGTCGACTGC 1.60991296 0.5
## GAACGGACATTTCACT 7.68055960 0.5
## CACAAACTCCCGGATG -4.50206567 0.5
## GCTCCTAAGGGAGTAA 3.32689089 0.5
## GACTAACCATCACGTA 5.97296458 0.5
## TACTCGCTCTTAACCT 6.64479053 0.5
## AGGCCGTCAGGAACGT 0.51695877 0.5
## CCACTACAGTGCTGCC -0.93090772 0.5
## ATCCACCCAAGCCGTC -5.95121223 0.5
## GAGTCCGAGACTGTAA 3.44709883 0.5
## AAGCCGCCAGAAGCAC -3.16282887 0.5
## GACACGCCAGATTGCT -1.63140169 0.5
## CGACTTCAGGCTACGA -7.47923376 0.5
## GGGTTGCCAGTAAGCG 3.92768967 0.5
## AGTGAGGGTCAGAATA 4.14113976 0.5
## GATCTAGCAGCCACCA -9.82737782 0.5
## ACGAGGACAAGACGTG -1.09445161 0.5
## CATATGGCAAGCCGCT -3.12559374 0.5
## TTATGCTCAGACGCTC -7.41360423 0.5
## AGTGTCAAGTCGCCGT -3.53316367 0.5
## AAGGCAGGTCTGCCAG 4.74299989 0.5
## TCAGGATAGCCCGAAA 3.29020655 0.5
## CCACTACCACTAGTAC -9.23213655 0.5
## AGCAGCCTCGCCAAAT 8.36989228 0.5
## CTGCCTATCCATGCTC -0.31664211 0.5
## GCTGCAGCATAGTAAG 3.78247853 0.5
## GCGCAGTTCAGTTCGA 4.41627051 0.5
## GGGCATCGTAGCGCTC 4.50317876 0.5
## CTAATGGGTTACGTCA -2.58641670 0.5
## ATTCTACGTTATCGGT -6.27692049 0.5
## GAAATGATCAGCTGGC -5.50233211 0.5
## TGCTACCTCGTCCAGG 0.69917563 0.5
## ACATGGTCACTTACGA 7.61287539 0.5
## ACTTTCAAGCGTTGCC -3.49755962 0.5
## CCTACACGTAAACCTC -1.81771097 0.5
## ATTGGTGAGATCCCAT -0.19750949 0.5
## CCGGGATCACAGACAG -3.06630110 0.5
## CAGTAACTCTCTTGAT -5.95114617 0.5
## ATCTACTCAATAGCGG -3.90651495 0.5
## ACCCACTGTTAAGAAC 4.82483508 0.5
## ACATACGTCTGCTTGC -6.16631089 0.5
## CGTCTACGTTGAACTC 2.82186087 0.5
## ATTATCCCAGCAGTTT 4.52982408 0.5
## GAAACTCTCGTTACGA -2.25962565 0.5
## GATGAAACATCATCCC 3.37784845 0.5
## CACAGTATCTGTCCGT -1.05686075 0.5
## TGAAAGAAGGAGCGAG 0.15021670 0.5
## CCGGTAGAGACCGGAT 2.59708784 0.5
## TGCGGGTTCTAACCGA 4.19464935 0.5
## GGCGACTTCGCGCCAA -1.07821877 0.5
## GGGATGAAGTCGCCGT -6.41080183 0.5
## GATTCAGGTACAGACG -0.79382160 0.5
## TAGACCACAAGAAGAG -4.84616542 0.5
## AATCCAGGTCAGAGGT 2.04616857 0.5
## TGAGCCGCAATGGACG -2.82498997 0.5
## CACATAGGTACTCTCC -0.25945645 0.5
## CATGGCGAGCAATATG 6.80217814 0.5
## CAGTAACGTTATTCTC 5.73738875 0.5
## GCGAGAAGTTCCGTCT -8.72120370 0.5
## TTTACTGGTCCCTTGT -2.26381632 0.5
## ATCATGGCACGAAATA -1.45908464 0.5
## CGCCAAGAGGCAGTCA -5.65424376 0.5
## CGTCCATGTCCAGTAT -12.14631589 0.5
## TGGCGCATCCATTCTA -5.83746787 0.5
## CCCATACGTAGCTTGT -4.23696194 0.5
## GCATGCGGTGCTGTAT -2.30929762 0.5
## TTCTTAGCATGCTAGT -10.98999135 0.5
## TGCGCAGAGTGGACGT 2.27632786 0.5
## ATTATCCGTTGCTCCT 1.60068503 0.5
## AGAATAGAGACTAGGC 8.19470211 0.5
## CCTACACAGCTGCAAG 3.78036762 0.5
## GACAGAGAGTGCTGCC 7.80813469 0.5
## GTTCGGGTCCCAAGAT 5.85749790 0.5
## AGTAGTCGTAAGCACG -7.66123928 0.5
## CTCACACGTACCTACA -7.27508623 0.5
## GCAGTTAAGTGGGTTG -0.71374206 0.5
## GTCAAGTCAGCTCGAC 4.66083424 0.5
## GCTGCGATCCCTAACC -2.18373837 0.5
## GATCGTATCCCTAACC -10.37214175 0.5
## TGAGAGGTCCGTAGTA -3.50342754 0.5
## CTCGTCAGTGCACTTA -1.73791864 0.5
## AGCATACAGCAAATCA 1.50302028 0.5
## TCGGGACGTGTCAATC 0.79349361 0.5
## ATGCGATGTAAACACA -7.23045009 0.5
## CATGACACACAACGTT 2.02909006 0.5
## GCTTGAAGTGCTAGCC -8.10136604 0.5
## TTTGGTTTCTCTTATG -2.60279866 0.5
## ACACCCTGTGAAATCA 4.13445131 0.5
## ATCATGGTCCCTCAGT -5.00020672 0.5
## CCTCTGACAATCAGAA -4.21936812 0.5
## ACATACGAGACACTAA 8.37578804 0.5
## TCACAAGTCCGTAGGC 1.55313421 0.5
## GCAGTTAGTCCAGTGC 0.25433822 0.5
## AGTGAGGGTTACAGAA 4.93468788 0.5
## CACACAAGTAATCACC -9.85862531 0.5
## GATCGCGAGGCTAGAC -4.19709412 0.5
## CTCGTACTCCTTTCGG -1.03062040 0.5
## ATCCACCTCGGCGGTT 9.23465138 0.5
## GAAGCAGAGCTAGTTC -2.52295127 0.5
## CAGTCCTAGTGTCTCA 2.29180444 0.5
## CGCTTCACAATGGATA -5.76518775 0.5
## TCCCGATTCATATCGG -2.95373630 0.5
## TGTGGTACATATACCG 6.02642958 0.5
## TACCTTACACTACAGT 2.79350107 0.5
## GTAGGCCGTCCGTCAG -7.66884750 0.5
## CAGAATCCAATCAGAA 5.89630599 0.5
## GGATTACTCTGTGCAA 8.08541832 0.5
## GTCGTAAGTTTGTTTC 9.16075689 0.5
## GATCGTAAGCCAGTAG -4.09050881 0.5
## GACTACAGTTAAAGAC -5.62714169 0.5
## CATGACACAACACCTA -2.21053324 0.5
## CACCAGGTCACGCGGT -12.63334048 0.5
## GTCTTCGTCTGAGTGT 3.38244355 0.5
## CCTTCGAAGTGGGATC -5.18497688 0.5
## GTGCGGTGTCCTGCTT -10.46623537 0.5
## GTCACAACATGCCTTC 0.21219912 0.5
## CAGAGAGTCAGTCAGT -8.03577464 0.5
## GTGCGGTGTACTCTCC 0.59424017 0.5
## CAGCTAATCAAGATCC 2.54671915 0.5
## CAAGATCGTTGGGACA -7.81771923 0.5
## TTTATGCCATCACAAC 4.99454347 0.5
## CGGTTAATCCCAAGTA 0.59786472 0.5
## TAGCCGGTCCGTAGTA 4.01096450 0.5
## ACGAGCCGTGTTTGTG 6.21024586 0.5
## AGCATACCAAACCCAT 10.23627590 0.5
## GAAATGATCAACACTG 1.47737360 0.5
## TATCTCACATAACCTG 0.95320144 0.5
## CCGTACTCACTTCTGC 3.55343253 0.5
## CTAGAGTTCAGAGGTG -2.89765320 0.5
## CTGATAGCATACAGCT -5.15230097 0.5
## TCGAGGCCACGGTAGA 6.80325879 0.5
## GATCAGTTCACTTATC -4.12827976 0.5
## GTTTCTAAGCCCTAAT -9.40520559 0.5
## CAGCTGGAGGAATTAC 0.86911471 0.5
## AGAGTGGTCGATCCCT -9.90547100 0.5
## CATGGCGCAACTGCTA -3.40613878 0.5
## CTGGTCTGTATATGGA 4.52674174 0.5
## CGTCACTCACAGGAGT -2.60302610 0.5
## AACTGGTTCAACCAAC 5.35380332 0.5
## CCATTCGCAGGGAGAG 0.52838436 0.5
## CATCAGATCTTCAACT -1.89936601 0.5
## GAATGAATCAGGCAAG -4.64746711 0.5
## TGTCCCATCGAATGCT 1.20136027 0.5
## AGTGGGACAGCCAATT -1.67811345 0.5
## AGAGCTTTCACATGCA -4.36323009 0.5
## TGCGGGTTCTGCAGTA -4.99074850 0.5
## GTCGTAAGTCGGCACT -7.54120103 0.5
## CTCGAGGTCGGAGCAA -0.55751139 0.5
## CTACACCAGATGAGAG -1.13772535 0.5
## ACGGCCATCTTACCTA -0.69767734 0.5
## CCCAGTTCACACCGAC -10.88652323 0.5
## TCGGGACTCGGATGGA 1.82109018 0.5
## CATCGGGTCCCGACTT 0.94192704 0.5
## CTTAACTGTAAGGATT 6.53823839 0.5
## AACCATGAGCGTAATA -0.11980178 0.5
## TCAGATGGTCTTCTCG -7.47340137 0.5
## CTCACACTCCCAACGG 10.66971754 0.5
## CCATGTCAGGATGGAA -1.77491162 0.5
## GGGTCTGGTACTTGAC -2.08513676 0.5
## GGAACTTCACAGTCGC -9.54205886 0.5
## GACCTGGCACATCCAA 4.49306281 0.5
## CAGTCCTCAAGACACG 7.68925514 0.5
## AGATCTGCATATGGTC -5.83544768 0.5
## CATCAGAGTATTCTCT -3.52228141 0.5
## TGCACCTTCGATAGAA -10.37898033 0.5
## CCTACACTCCCAAGTA -4.44594705 0.5
## ACTTTCATCGTAGATC 5.10639949 0.5
## TTGCGTCCACCATGTA 6.96255417 0.5
## AAATGCCAGGTGCTAG 9.63927708 0.5
## ATGCGATGTCCATCCT 4.08013484 0.5
## CCAGCGAAGCCACTAT -1.59871243 0.5
## TACTTGTAGTGTACTC 5.13650489 0.5
## AGGGATGTCTCGCTTG 3.06418591 0.5
## TGTCCCAGTATTAGCC -9.31851269 0.5
## TGCTACCTCGCACTCT 0.52454619 0.5
## GTAACGTCAGTATAAG 3.21165533 0.5
## GCGCAACGTTCGTTGA 3.38075416 0.5
## GCGAGAACATGAGCGA 5.87375864 0.5
## TGCCCTAGTGCACCAC -0.42046420 0.5
## CTAGAGTGTAAACACA 2.07444697 0.5
## AGTAGTCCACCGGAAA 3.98464886 0.5
## CATATTCTCAGCGATT 0.35512934 0.5
## GAATGAAGTAACGACG 1.31015961 0.5
## GATCAGTAGTACTTGC -3.75167056 0.5
## CAAGAAACAGGATTGG 3.83764871 0.5
## CCTATTATCAACACTG -5.68727759 0.5
## CAGCAGCTCTGCGGCA -2.67097026 0.5
## ATAAGAGAGCTGCGAA 2.81866772 0.5
## AGATCTGCACCTATCC -10.53155833 0.5
## GACACGCGTAGAGCTG -6.28180753 0.5
## TACACGAAGCTAGGCA 0.26584942 0.5
## AACACGTTCCGAAGAG -4.29921878 0.5
## TTAACTCGTGTAATGA 7.87178795 0.5
## TGGCGCAGTTCAGACT 1.05951864 0.5
## CATCAGAGTCTAGTCA 5.54726428 0.5
## CTAGAGTAGCATGGCA 6.74860631 0.5
## TACGGTAAGCGTGAAC 4.34339294 0.5
## TGACTTTTCGGATGTT 3.39041386 0.5
## CTCACACTCCTACAGA -8.66432922 0.5
## CCGTACTCACTGAAGG -5.92724179 0.5
## ATAACGCGTGGAAAGA -4.89083534 0.5
## GCTTGAAAGCTAGGCA 6.75708117 0.5
## AAGTCTGGTGTTGGGA -6.11249735 0.5
## CGATCGGGTACAGCAG 3.20085234 0.5
## AGTAGTCTCGATGAGG 2.51762719 0.5
## CGACCTTCAGACGCTC 4.50772268 0.5
## GCATACACATGCAACT 1.53875690 0.5
## TCCCGATTCGCAGGCT 8.66711686 0.5
## TTAGGCAAGATCGATA 5.77674193 0.5
## TCGTACCAGGCAAAGA -7.62956725 0.5
## GGATGTTGTATAGGGC 4.41660737 0.5
## AATCCAGCAGAGTGTG -4.31960620 0.5
## CATGCCTCACGGCCAT 4.85747142 0.5
## CTCGAAACACATGACT -0.07689102 0.5
## CTGCCTAGTTGCGTTA -4.57535706 0.5
## GGCGACTAGACAGAGA 0.16510837 0.5
## TACAGTGGTGTAATGA 5.76301057 0.5
## ACGAGCCTCTTATCTG 5.07518514 0.5
## GGGAATGCAAATACAG 6.71830037 0.5
## TGCACCTGTACCGAGA -6.22147826 0.5
## ATCATCTTCAGTCAGT -0.16951143 0.5
## CATATTCGTACAGTTC -1.90872262 0.5
## GCATGATGTTCCACTC -0.14753598 0.5
## AAGGCAGTCACGACTA 0.26554382 0.5
## GAAACTCTCTATCCCG -1.44928431 0.5
## AGCATACTCTGCTGTC 3.18573562 0.5
## TGGGCGTCAGCGTTCG 1.23644683 0.5
## TCGTAGAGTTCGTCTC -4.81356261 0.5
## GACAGAGGTACCGCTG 4.00260346 0.5
## TCTCATACACATAACC -6.72790597 0.5
## TGGGCGTCATTGAGCT -9.73154313 0.5
## CATGACACATGTCTCC -6.98352499 0.5
## GAATAAGGTGCACGAA 7.96834932 0.5
## TGCGCAGCAAGCGAGT -2.23807869 0.5
## CTTCTCTCAGCCAGAA -0.28475056 0.5
## AAGCCGCAGTGGCACA -1.19173322 0.5
## CTCTACGAGTGGACGT -9.95085912 0.5
## GTCATTTTCTATCCCG 7.31827049 0.5
## CGAGCACAGCCACTAT -0.37672640 0.5
## AGTAGTCGTAACGACG -4.80736220 0.5
## GACGTGCAGAGGGATA 3.00008337 0.5
## GTCTTCGTCCAACCAA 4.35234047 0.5
## CAAGGCCTCGCCCTTA -4.10777888 0.5
## TGTGGTACATGGTTGT 5.97931693 0.5
## CCTCAGTTCGAATGCT 3.10075920 0.5
## ACCGTAATCTGAGGGA 4.67346558 0.5
## GTTAAGCCAGTTCATG -5.74955731 0.5
## CTGCCTATCAATCTCT 1.58814641 0.5
## GACGGCTTCTCCAACC -0.61419188 0.5
## TTTCCTCCAGTTCCCT -12.34614791 0.5
## GCGCCAAAGCCCTAAT -1.29271016 0.5
## CCACCTATCCCGACTT 4.05638367 0.5
## TTTATGCCAGGGCATA -10.93641161 0.5
## TACAGTGTCGCGGATC 1.27509811 0.5
## AGCTCTCCACCACGTG -3.34557017 0.5
## GTGGGTCCATTGAGCT 10.47053957 0.5
## GGGATGACAGACTCGC -3.65092807 0.5
## ACACCAAGTTCGGGCT 5.14879219 0.5
## TGATTTCAGCTATGCT 1.23120054 0.5
## TGGCCAGAGAGGGCTT 4.47840018 0.5
## TCGGTAAGTAAAGTCA 7.48264607 0.5
## TGAAAGAGTCCCTTGT 5.75532917 0.5
## CCGTGGATCGTTTATC 0.42559319 0.5
## GAACCTATCCTCAACC -5.69093177 0.5
## GCGCAGTCATCCAACA 3.37677607 0.5
## ACATGGTTCGCGCCAA 3.75391014 0.5
## CTTGGCTGTACGCACC -8.30851167 0.5
## AGATTGCAGGCCCGTT -8.83620605 0.5
## AGGCCGTGTTACGGAG 5.75832235 0.5
## GGTGTTAGTTAAGATG -2.00817489 0.5
## GGAATAATCCTGTAGA 4.13971276 0.5
## TATTACCGTATTAGCC 1.17733605 0.5
## ATAACGCGTTAGTGGG -3.50692765 0.5
## AAACGGGGTTATCCGA 1.64545336 0.5
## TGTGGTATCGTTTAGG 3.87820458 0.5
## ATCACGAGTATGAATG 3.41487553 0.5
## CAGCAGCTCACCTCGT -10.44154398 0.5
## CCAATCCGTATTACCG 5.00515791 0.5
## TTCTACATCACATAGC 6.55028648 0.5
## TGTCCCATCGTATCAG -3.51706822 0.5
## AGCTCTCAGTGTTTGC -3.44325153 0.5
## CAACCTCAGTAACCCT 6.43545138 0.5
## GTGGGTCAGGTAAACT -0.64842123 0.5
## TAAGTGCCACGTCAGC 7.28087341 0.5
## GACCTGGCAGCCACCA -8.71281307 0.5
## ACAGCCGCAGGATCGA -6.90833618 0.5
## AACTCCCCAGCTCGCA -3.48441558 0.5
## GGAAAGCGTCTCTCGT 0.23251375 0.5
## CGCTTCAAGCAGGTCA 1.46609183 0.5
## GATCGCGAGAAGGGTA 4.14813503 0.5
## AAGCCGCCAGGATTGG 2.88993836 0.5
## ATTGGACGTCGTGGCT 4.28667964 0.5
## CCCATACCACTAAGTC 7.07868143 0.5
## TCTCTAATCCCATTTA 5.66378840 0.5
## TCGTAGAGTGGTACAG -2.69605685 0.5
## AAACGGGAGAGACGAA -2.25437695 0.5
## GACTACATCACCACCT 9.01486282 0.5
## GAAACTCAGTTGAGTA -4.50723060 0.5
## CCCTCCTTCCTCCTAG 1.29110803 0.5
## GCGACCATCACGGTTA 5.39959967 0.5
## TCTCTAAAGAGTCGGT 3.61876677 0.5
## GGCTCGATCTCACATT -0.06355014 0.5
## CTGATAGAGGCAGGTT 6.18298026 0.5
## CATGCCTAGGAGTTTA 2.49315506 0.5
## TGGCTGGTCAGCCTAA -4.58668200 0.5
## TCAGATGTCGTTACAG -7.74072556 0.5
## CAGCTGGGTTATGTGC -2.77598063 0.5
## GGAACTTAGTCGTACT -7.65630497 0.5
## CCGGGATCACCGGAAA 4.79185561 0.5
## CCTTCGATCAAAGACA -5.16949311 0.5
## CGAGAAGGTATCGCAT 1.23219604 0.5
## CCTAAAGAGACTGGGT -8.39922297 0.5
## CAGATCACATTGGCGC 4.88584554 0.5
## CTAGCCTAGCTGGAAC 5.83014130 0.5
## ATTGGTGTCTCGTATT 6.26252206 0.5
## GGGAATGTCAAAGTAG 2.12691943 0.5
## CCATGTCCACGGCCAT -6.39443455 0.5
## GGCAATTCATATGGTC -4.46128743 0.5
## CTGTGCTCATGTCCTC 2.10428535 0.5
## TTAACTCCAACGCACC 1.95839630 0.5
## CGAACATAGCGGCTTC -5.94601457 0.5
## TCGCGTTAGGCACATG 4.00673550 0.5
## GGGTTGCCAAACTGCT 4.09198288 0.5
## ATAAGAGCAGGTGCCT 0.55407994 0.5
## CGGACACGTATTCGTG 4.91444266 0.5
## CTGATAGTCACGACTA -8.04744340 0.5
## GAACATCGTGAGTATA 2.55620440 0.5
## TGCTACCAGTGGTCCC 1.52336714 0.5
## GCTGGGTAGTCTTGCA -6.99109831 0.5
## TACGGATGTCTAACGT 3.20282438 0.5
## TGGGCGTCAATGGATA 1.21547427 0.5
## CTGCTGTCATTTGCTT 1.81413427 0.5
## GGGCATCAGCAGCCTC 4.42006712 0.5
## CGTGAGCAGACTAGAT -8.24611111 0.5
## CAGCGACCACACCGAC 6.69669295 0.5
## CCCAATCCAGTTAACC 6.46831432 0.5
## CAGCGACTCAGCGACC 0.74564999 0.5
## GAGCAGAAGCTATGCT 5.40775242 0.5
## CTCTGGTTCACTTCAT 0.97420778 0.5
## CGCGTTTCAGCTGTGC 2.72469496 0.5
## GGACGTCCACCTCGGA -3.36186641 0.5
## TAGTTGGAGAGTTGGC -1.20152036 0.5
## ATTGGTGTCGGAATCT 0.53841459 0.5
## GAATGAACACGGCCAT 4.70701237 0.5
## GTGCATACAAGGTGTG -3.57461214 0.5
## GGAATAAGTCGGCACT -4.38734743 0.5
## ACCCACTTCCAAAGTC -4.50665306 0.5
## ACTATCTCAATTCCTT 7.01717630 0.5
## AGCATACAGTGGGATC 2.49401762 0.5DGE: All Cells
- DGE methods available in Seurat include:
- DESeq2DETest()
- DiffExpTest()
- DiffTTest()
# Available DGE methods:
## "wilcox", "bimod", "roc", "t", "tobit", "poisson", "negbinom", "MAST", "DESeq2"
runDGE <- function(pbmc, meta_var, group1, group2, test.use="wilcox"){
#print(paste("DGE_allCells",meta_var,sep="_"))
pbmc <- SetAllIdent(pbmc, id = meta_var)
pbmc <- StashIdent(pbmc, save.name = meta_var)
DEGs <- FindMarkers(pbmc, ident.1=group1, ident.2=group2, test.use=test.use)
DEGs$gene <- row.names(DEGs)
return(DEGs)
}PD vs. Controls
DEG_df <-runDGE(pbmc, "dx", group1 = "PD", group2="control")
cap = paste("DEGs (All Cells): PD vs. Controls")
createDT(DEG_df, caption = cap)volcanoPlot(DEG_df, caption = cap)
LRRK vs. PD
DEG_df <-runDGE(pbmc, "mut", "LRRK2", "PD")
cap <- paste("DEGs (All Cells): LRRK2 vs. PD")
createDT(DEG_df, caption = cap)volcanoPlot(DEG_df, caption = cap)
DGE: CD14++/CD16+ vs. CD14++/CD16–
DEG_df <-runDGE(pbmc, "CellType_DGE", "CD14++/CD16+", "CD14++/CD16--")## Error in WhichCells(object = object, ident = ident.1): Identity : CD14++/CD16+ not found.cap <- paste("DEGs (All Cells): CD14++/CD16+ vs. CD14++/CD16--")
createDT(DEG_df, caption = cap)volcanoPlot(DEG_df, caption = cap)
DGE: Within Clusters
DGE_within_clusters <- function(pbmc, meta_var, group1, group2){
for (clust in unique(pbmc@ident)){
# Subset cells by cluster
pbmc <- SetAllIdent(pbmc, id = "post_clustering")
pbmc_clustSub <- SubsetData(pbmc, ident.use = clust, subset.raw = T)
cap <- paste("Cluster ",clust,": \n ",group1," vs. ", group2, sep="")
cat('\n')
cat("### ",cap)
# DGE
DEG_df <-runDGE(pbmc_clustSub, meta_var, group1 , group2 )
# Show results
volcanoPlot(DEG_df, caption = cap)
createDT(DEG_df, caption = cap)
cat('\n')
}
}Between Disease Groups
DGE_within_clusters(pbmc, "dx", "PD", "control") ## Error in WhichCells(object = object, ident = ident.use, ident.remove = ident.remove, : Identity : FCER1A not found.Between Mutation Groups
DGE_within_clusters(pbmc, "mut", "LRKK2", "PD")## Error in WhichCells(object = object, ident = ident.use, ident.remove = ident.remove, : Identity : FCER1A not found.Between Mutation Groups
DGE_within_clusters(pbmc, "CellType_DGE", "CD14++/CD16+", "CD14++/CD16--") ## Error in WhichCells(object = object, ident = ident.use, ident.remove = ident.remove, : Identity : FCER1A not found.DGE_within_clusters(pbmc, "CellType_AvgExp", "CD14++/CD16+", "CD14++/CD16--")## Error in WhichCells(object = object, ident = ident.use, ident.remove = ident.remove, : Identity : FCER1A not found.Try Different Cluster Resolutions
If you perturb some of our parameter choices above (for example, setting resolution=0.8 or changing the number of PCs), you might see the CD4 T cells subdivide into two groups. You can explore this subdivision to find markers separating the two T cell subsets. However, before reclustering (which will overwrite object@ident), we can stash our renamed identities to be easily recovered later.
Find New Clusters
new_resolution <- 3.0
orig_resolution <- paste("resolution",params$resolution,sep="_")
pbmc <- StashIdent(object = pbmc, save.name = orig_resolution)
## Warning in BuildSNN(object = object, genes.use = genes.use, reduction.type
## = reduction.type, : Build parameters exactly match those of already
## computed and stored SNN. To force recalculation, set force.recalc to TRUE.
pbmc <- FindClusters(object = pbmc, reduction.type = "pca", dims.use = 1:10,
resolution = new_resolution, print.output = F)## 11 singletons identified. 35 final clusters.pbmc <- StashIdent(object = pbmc, save.name = "resolution_3.0")
plot1 <- TSNEPlot(object = pbmc, do.return = TRUE, no.legend = TRUE, do.label = TRUE, label.size=labSize)
plot2 <- TSNEPlot(object = pbmc, do.return = TRUE, group.by = "ClusterNames_0.6",
no.legend = TRUE, do.label = TRUE, label.size=labSize)## Error in FetchData(object = object, vars.all = group.by): Error: ClusterNames_0.6 not foundplot_grid(plot1, plot2)## Error in plot_grid(plot1, plot2): object 'plot2' not foundFind New Biomarkers
res3.0_markers <- FindAllMarkers(object = pbmc, min.pct = 0.25, thresh.use = 0.25, only.pos = F, test.use = "wilcox")
FeaturePlot(object = pbmc, features.plot = top1$gene, cols.use = c("green", "blue"))
# Set back to orig
pbmc <- SetAllIdent(object = pbmc, id = orig_resolution) Save Results
# Save results for EACH run (in their respective subfolders)
saveRDS(pbmc, file=file.path(params$resultsPath, "cd14-processed.rds") )